RNA–Protein interactions for RNA: ENST00000536843.5

CHFR-213, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 2,424 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-213ENST00000536843 NISCHQ9Y2I1 1504 aa31.58■■■□□ 2.65
CHFR-213ENST00000536843 CCDC180Q9P1Z9 1646 aa27.38■■□□□ 1.97
CHFR-213ENST00000536843 SHROOM4Q9ULL8 1493 aa26.71■■□□□ 1.87
CHFR-213ENST00000536843 ZCCHC6Q5VYS8 1495 aaKnown RBP26.66■■□□□ 1.86
CHFR-213ENST00000536843 HRCP23327 699 aa26.4■■□□□ 1.82
CHFR-213ENST00000536843 DCAF8L2P0C7V8 631 aa26.21■■□□□ 1.79
CHFR-213ENST00000536843 SUPT5HO00267 1087 aaKnown RBP26.09■■□□□ 1.77
CHFR-213ENST00000536843 DCAF1Q9Y4B6 1507 aa25.97■■□□□ 1.75
CHFR-213ENST00000536843 ABCC9O60706 1549 aa25.9■■□□□ 1.74
CHFR-213ENST00000536843 PELP1Q8IZL8 1130 aaKnown RBP25.84■■□□□ 1.73
CHFR-213ENST00000536843 MYO15BQ96JP2 1530 aa25.69■■□□□ 1.7
CHFR-213ENST00000536843 PPARGC1BQ86YN6 1023 aaKnown RBP25.62■■□□□ 1.69
CHFR-213ENST00000536843 PCGF6Q9BYE7 350 aa25.61■■□□□ 1.69
CHFR-213ENST00000536843 NACADO15069 1562 aa25.53■■□□□ 1.68
CHFR-213ENST00000536843 CHIC1Q5VXU3 224 aa25.37■■□□□ 1.65
CHFR-213ENST00000536843 RB1CC1Q8TDY2 1594 aa25.31■■□□□ 1.64
CHFR-213ENST00000536843 SCRIBQ14160 1630 aa25.19■■□□□ 1.62
CHFR-213ENST00000536843 SCAF1Q9H7N4 1312 aaKnown RBP24.98■■□□□ 1.59
CHFR-213ENST00000536843 MYT1Q01538 1121 aa24.94■■□□□ 1.58
CHFR-213ENST00000536843 TRIM26Q12899 539 aaPredicted RBP24.92■■□□□ 1.58
CHFR-213ENST00000536843 RSF1Q96T23 1441 aaPredicted RBP24.9■■□□□ 1.58
CHFR-213ENST00000536843 ZEB1P37275 1124 aaPredicted RBP24.86■■□□□ 1.57
CHFR-213ENST00000536843 UNC13AQ9UPW8 1703 aa24.75■■□□□ 1.55
CHFR-213ENST00000536843 CECR2Q9BXF3 1484 aa24.64■■□□□ 1.53
CHFR-213ENST00000536843 LOC105371045A0A1W2PR82 267 aa24.63■■□□□ 1.53
CHFR-213ENST00000536843 MROH2BQ7Z745 1585 aa24.53■■□□□ 1.52
CHFR-213ENST00000536843 BICRAQ9NZM4 1560 aa24.52■■□□□ 1.52
CHFR-213ENST00000536843 PABPN1Q86U42 306 aaKnown RBP eCLIP24.42■■□□□ 1.5
CHFR-213ENST00000536843 ACIN1Q9UKV3 1341 aaKnown RBP24.38■■□□□ 1.49
CHFR-213ENST00000536843 WIZO95785 1651 aa24.37■■□□□ 1.49
CHFR-213ENST00000536843 TRIM41Q8WV44 630 aa24.34■■□□□ 1.49
CHFR-213ENST00000536843 BAZ1AQ9NRL2 1556 aaPredicted RBP24.26■■□□□ 1.47
CHFR-213ENST00000536843 NEUROD1Q13562 356 aa24.22■■□□□ 1.47
CHFR-213ENST00000536843 FAM9AQ8IZU1 332 aaPredicted RBP24.12■■□□□ 1.45
CHFR-213ENST00000536843 SMARCA4P51532 1647 aa24.11■■□□□ 1.45
CHFR-213ENST00000536843 GTF3C3Q9Y5Q9 886 aa24.1■■□□□ 1.45
CHFR-213ENST00000536843 CENPBP07199 599 aaPredicted RBP24.06■■□□□ 1.44
CHFR-213ENST00000536843 TOP2AP11388 1531 aaKnown RBP24.01■■□□□ 1.43
CHFR-213ENST00000536843 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.42
CHFR-213ENST00000536843 CCDC88BA6NC98 1476 aa23.91■■□□□ 1.42
CHFR-213ENST00000536843 EHMT2Q96KQ7 1210 aa23.89■■□□□ 1.42
CHFR-213ENST00000536843 SMARCA2P51531 1590 aa23.86■■□□□ 1.41
CHFR-213ENST00000536843 PEG3Q9GZU2 1588 aa23.84■■□□□ 1.41
CHFR-213ENST00000536843 DIEXFQ68CQ4 756 aaKnown RBP23.83■■□□□ 1.41
CHFR-213ENST00000536843 ATAD2BQ9ULI0 1458 aa23.74■■□□□ 1.39
CHFR-213ENST00000536843 ABCC8Q09428 1581 aa23.73■■□□□ 1.39
CHFR-213ENST00000536843 CCER1Q8TC90 406 aaPredicted RBP23.68■■□□□ 1.38
CHFR-213ENST00000536843 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.66■■□□□ 1.38
CHFR-213ENST00000536843 BAZ1BQ9UIG0 1483 aaKnown RBP23.6■■□□□ 1.37
CHFR-213ENST00000536843 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
CHFR-213ENST00000536843 HMGXB3Q12766 1538 aa23.52■■□□□ 1.36
CHFR-213ENST00000536843 SOGA1O94964 1423 aa23.49■■□□□ 1.35
CHFR-213ENST00000536843 TTBK1Q5TCY1 1321 aaPredicted RBP23.49■■□□□ 1.35
CHFR-213ENST00000536843 CC2D2AQ9P2K1 1620 aa23.45■■□□□ 1.34
CHFR-213ENST00000536843 WRNQ14191 1432 aaPredicted RBP eCLIP23.39■■□□□ 1.33
CHFR-213ENST00000536843 ZNF316A6NFI3 1004 aaPredicted RBP23.39■■□□□ 1.33
CHFR-213ENST00000536843 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
CHFR-213ENST00000536843 CSRNP3Q8WYN3 585 aa23.36■■□□□ 1.33
CHFR-213ENST00000536843 EEA1Q15075 1411 aa23.35■■□□□ 1.33
CHFR-213ENST00000536843 YTHDC1Q96MU7 727 aaKnown RBP23.28■■□□□ 1.32
CHFR-213ENST00000536843 TNIKQ9UKE5 1360 aa23.27■■□□□ 1.32
CHFR-213ENST00000536843 SYNJ1O43426 1573 aa23.27■■□□□ 1.32
CHFR-213ENST00000536843 CEP162Q5TB80 1403 aa23.27■■□□□ 1.32
CHFR-213ENST00000536843 UBTFP17480 764 aaKnown RBP23.22■■□□□ 1.31
CHFR-213ENST00000536843 MIER1Q8N108 512 aa23.17■■□□□ 1.3
CHFR-213ENST00000536843 CLSPNQ9HAW4 1339 aa23.17■■□□□ 1.3
CHFR-213ENST00000536843 GOLGA3Q08378 1498 aa23.16■■□□□ 1.3
CHFR-213ENST00000536843 ANP32EQ9BTT0 268 aa23.08■■□□□ 1.29
CHFR-213ENST00000536843 BCL11AQ9H165 835 aa23.08■■□□□ 1.29
CHFR-213ENST00000536843 CEP164Q9UPV0 1460 aa23.06■■□□□ 1.28
CHFR-213ENST00000536843 KIF21BO75037 1637 aa23.02■■□□□ 1.28
CHFR-213ENST00000536843 CFTRP13569 1480 aa23.02■■□□□ 1.27
CHFR-213ENST00000536843 TOP2BQ02880 1626 aa23.01■■□□□ 1.27
CHFR-213ENST00000536843 SUPT16HQ9Y5B9 1047 aaKnown RBP22.97■■□□□ 1.27
CHFR-213ENST00000536843 CADPSQ9ULU8 1353 aa22.95■■□□□ 1.26
CHFR-213ENST00000536843 BIVM-ERCC5R4GMW8 1640 aa22.93■■□□□ 1.26
CHFR-213ENST00000536843 RAPGEF2Q9Y4G8 1499 aa22.92■■□□□ 1.26
CHFR-213ENST00000536843 TSHZ2Q9NRE2 1034 aa22.91■■□□□ 1.26
CHFR-213ENST00000536843 CLIP1P30622 1438 aa22.89■■□□□ 1.26
CHFR-213ENST00000536843 DNAJC5BQ9UF47 199 aa22.89■■□□□ 1.25
CHFR-213ENST00000536843 PRDM2Q13029 1718 aa22.87■■□□□ 1.25
CHFR-213ENST00000536843 CUX1P39880 1505 aa22.85■■□□□ 1.25
CHFR-213ENST00000536843 RANGAP1P46060 587 aaPredicted RBP22.79■■□□□ 1.24
CHFR-213ENST00000536843 LAMC3Q9Y6N6 1575 aa22.76■■□□□ 1.23
CHFR-213ENST00000536843 VPS8Q8N3P4 1428 aa22.76■■□□□ 1.23
CHFR-213ENST00000536843 PRXQ9BXM0 1461 aa22.75■■□□□ 1.23
CHFR-213ENST00000536843 NESP48681 1621 aa22.71■■□□□ 1.23
CHFR-213ENST00000536843 ERICH3Q5RHP9 1530 aa22.7■■□□□ 1.22
CHFR-213ENST00000536843 KIF27Q86VH2 1401 aa22.69■■□□□ 1.22
CHFR-213ENST00000536843 FANCD2Q9BXW9 1451 aa22.68■■□□□ 1.22
CHFR-213ENST00000536843 APLP2Q06481 763 aa22.65■■□□□ 1.22
CHFR-213ENST00000536843 PDS5BQ9NTI5 1447 aa22.6■■□□□ 1.21
CHFR-213ENST00000536843 HNRNPUL2Q1KMD3 747 aaKnown RBP22.57■■□□□ 1.2
CHFR-213ENST00000536843 ARAP1Q96P48 1450 aa22.56■■□□□ 1.2
CHFR-213ENST00000536843 CUX2O14529 1486 aa22.52■■□□□ 1.2
CHFR-213ENST00000536843 IGF1RP08069 1367 aa22.49■■□□□ 1.19
CHFR-213ENST00000536843 FGD5Q6ZNL6 1462 aa22.48■■□□□ 1.19
CHFR-213ENST00000536843 DNMBPQ6XZF7 1577 aa22.47■■□□□ 1.19
CHFR-213ENST00000536843 KIF21AQ7Z4S6 1674 aa22.44■■□□□ 1.18
CHFR-213ENST00000536843 TOPBP1Q92547 1522 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms