RNA–Protein interactions for RNA: ENST00000545046.5

CHFR-224, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 2,186 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-224ENST00000545046 NISCHQ9Y2I1 1504 aa36.55■■■■□ 3.44
CHFR-224ENST00000545046 CCDC180Q9P1Z9 1646 aa31.66■■■□□ 2.66
CHFR-224ENST00000545046 ZCCHC6Q5VYS8 1495 aaKnown RBP30.76■■■□□ 2.52
CHFR-224ENST00000545046 SHROOM4Q9ULL8 1493 aa30.22■■■□□ 2.43
CHFR-224ENST00000545046 DCAF8L2P0C7V8 631 aa30.21■■■□□ 2.43
CHFR-224ENST00000545046 DCAF1Q9Y4B6 1507 aa30.18■■■□□ 2.42
CHFR-224ENST00000545046 MYO15BQ96JP2 1530 aa29.64■■■□□ 2.34
CHFR-224ENST00000545046 ABCC9O60706 1549 aa29.62■■■□□ 2.33
CHFR-224ENST00000545046 NACADO15069 1562 aa29.39■■■□□ 2.3
CHFR-224ENST00000545046 SUPT5HO00267 1087 aaKnown RBP29.32■■■□□ 2.28
CHFR-224ENST00000545046 SCRIBQ14160 1630 aa29.23■■■□□ 2.27
CHFR-224ENST00000545046 RB1CC1Q8TDY2 1594 aa29.07■■■□□ 2.24
CHFR-224ENST00000545046 UNC13AQ9UPW8 1703 aa28.54■■■□□ 2.16
CHFR-224ENST00000545046 RSF1Q96T23 1441 aaPredicted RBP28.52■■■□□ 2.16
CHFR-224ENST00000545046 CECR2Q9BXF3 1484 aa28.38■■■□□ 2.13
CHFR-224ENST00000545046 MROH2BQ7Z745 1585 aa28.27■■■□□ 2.12
CHFR-224ENST00000545046 CHIC1Q5VXU3 224 aa28.23■■■□□ 2.11
CHFR-224ENST00000545046 BAZ1AQ9NRL2 1556 aaPredicted RBP28.19■■■□□ 2.1
CHFR-224ENST00000545046 BICRAQ9NZM4 1560 aa28.16■■■□□ 2.1
CHFR-224ENST00000545046 WIZO95785 1651 aa28.1■■■□□ 2.09
CHFR-224ENST00000545046 PABPN1Q86U42 306 aaKnown RBP eCLIP28.06■■■□□ 2.08
CHFR-224ENST00000545046 SMARCA4P51532 1647 aa28.02■■■□□ 2.08
CHFR-224ENST00000545046 TOP2AP11388 1531 aaKnown RBP27.76■■■□□ 2.04
CHFR-224ENST00000545046 PEG3Q9GZU2 1588 aa27.61■■■□□ 2.01
CHFR-224ENST00000545046 SMARCA2P51531 1590 aa27.53■■■□□ 2
CHFR-224ENST00000545046 CCDC88BA6NC98 1476 aa27.52■■■□□ 2
CHFR-224ENST00000545046 TRIM41Q8WV44 630 aa27.51■■□□□ 1.99
CHFR-224ENST00000545046 ATAD2BQ9ULI0 1458 aa27.43■■□□□ 1.98
CHFR-224ENST00000545046 EIF4G1Q04637 1599 aaKnown RBP27.43■■□□□ 1.98
CHFR-224ENST00000545046 BAZ1BQ9UIG0 1483 aaKnown RBP27.34■■□□□ 1.97
CHFR-224ENST00000545046 LOC105371045A0A1W2PR82 267 aa27.21■■□□□ 1.95
CHFR-224ENST00000545046 NCAPD3P42695 1498 aa27.11■■□□□ 1.93
CHFR-224ENST00000545046 HMGXB3Q12766 1538 aa27.11■■□□□ 1.93
CHFR-224ENST00000545046 ABCC8Q09428 1581 aa27.1■■□□□ 1.93
CHFR-224ENST00000545046 FAM9AQ8IZU1 332 aaPredicted RBP27.06■■□□□ 1.92
CHFR-224ENST00000545046 WRNQ14191 1432 aaPredicted RBP eCLIP26.85■■□□□ 1.89
CHFR-224ENST00000545046 CC2D2AQ9P2K1 1620 aa26.81■■□□□ 1.88
CHFR-224ENST00000545046 SYNJ1O43426 1573 aa26.72■■□□□ 1.87
CHFR-224ENST00000545046 EHMT2Q96KQ7 1210 aa26.7■■□□□ 1.87
CHFR-224ENST00000545046 EEA1Q15075 1411 aa26.69■■□□□ 1.86
CHFR-224ENST00000545046 SOGA1O94964 1423 aa26.67■■□□□ 1.86
CHFR-224ENST00000545046 CFTRP13569 1480 aa26.64■■□□□ 1.85
CHFR-224ENST00000545046 PRDM2Q13029 1718 aa26.59■■□□□ 1.85
CHFR-224ENST00000545046 TOP2BQ02880 1626 aa26.58■■□□□ 1.85
CHFR-224ENST00000545046 CSRNP3Q8WYN3 585 aa26.55■■□□□ 1.84
CHFR-224ENST00000545046 RUSC2Q8N2Y8 1516 aa26.55■■□□□ 1.84
CHFR-224ENST00000545046 BIVM-ERCC5R4GMW8 1640 aa26.54■■□□□ 1.84
CHFR-224ENST00000545046 CADPSQ9ULU8 1353 aa26.48■■□□□ 1.83
CHFR-224ENST00000545046 PCGF6Q9BYE7 350 aa26.44■■□□□ 1.82
CHFR-224ENST00000545046 CUX1P39880 1505 aa26.4■■□□□ 1.82
CHFR-224ENST00000545046 GOLGA3Q08378 1498 aa26.36■■□□□ 1.81
CHFR-224ENST00000545046 TNIKQ9UKE5 1360 aa26.35■■□□□ 1.81
CHFR-224ENST00000545046 KIF21BO75037 1637 aa26.32■■□□□ 1.8
CHFR-224ENST00000545046 CEP164Q9UPV0 1460 aa26.31■■□□□ 1.8
CHFR-224ENST00000545046 TRIM26Q12899 539 aaPredicted RBP26.31■■□□□ 1.8
CHFR-224ENST00000545046 UBTFP17480 764 aaKnown RBP26.3■■□□□ 1.8
CHFR-224ENST00000545046 CEP162Q5TB80 1403 aa26.25■■□□□ 1.79
CHFR-224ENST00000545046 FANCD2Q9BXW9 1451 aa26.2■■□□□ 1.79
CHFR-224ENST00000545046 LAMC3Q9Y6N6 1575 aa26.15■■□□□ 1.78
CHFR-224ENST00000545046 KIF27Q86VH2 1401 aa26.15■■□□□ 1.78
CHFR-224ENST00000545046 NESP48681 1621 aa26.13■■□□□ 1.77
CHFR-224ENST00000545046 RAPGEF2Q9Y4G8 1499 aa26.1■■□□□ 1.77
CHFR-224ENST00000545046 FGD5Q6ZNL6 1462 aa26.06■■□□□ 1.76
CHFR-224ENST00000545046 ERICH3Q5RHP9 1530 aa26.05■■□□□ 1.76
CHFR-224ENST00000545046 PRXQ9BXM0 1461 aa26.04■■□□□ 1.76
CHFR-224ENST00000545046 DNMBPQ6XZF7 1577 aa26.03■■□□□ 1.76
CHFR-224ENST00000545046 DNAJC5BQ9UF47 199 aa25.99■■□□□ 1.75
CHFR-224ENST00000545046 HRCP23327 699 aa25.99■■□□□ 1.75
CHFR-224ENST00000545046 CUX2O14529 1486 aa25.98■■□□□ 1.75
CHFR-224ENST00000545046 CLIP1P30622 1438 aa25.96■■□□□ 1.75
CHFR-224ENST00000545046 TOPBP1Q92547 1522 aa25.96■■□□□ 1.75
CHFR-224ENST00000545046 PDS5BQ9NTI5 1447 aa25.95■■□□□ 1.75
CHFR-224ENST00000545046 PPARGC1BQ86YN6 1023 aaKnown RBP25.94■■□□□ 1.74
CHFR-224ENST00000545046 POLA1P09884 1462 aaPredicted RBP25.86■■□□□ 1.73
CHFR-224ENST00000545046 IGF1RP08069 1367 aa25.85■■□□□ 1.73
CHFR-224ENST00000545046 KIF21AQ7Z4S6 1674 aa25.84■■□□□ 1.73
CHFR-224ENST00000545046 URB2Q14146 1524 aaKnown RBP25.83■■□□□ 1.73
CHFR-224ENST00000545046 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
CHFR-224ENST00000545046 RAD54L2Q9Y4B4 1467 aa25.81■■□□□ 1.72
CHFR-224ENST00000545046 RANGAP1P46060 587 aaPredicted RBP25.78■■□□□ 1.72
CHFR-224ENST00000545046 VPS8Q8N3P4 1428 aa25.77■■□□□ 1.72
CHFR-224ENST00000545046 CARMIL1Q5VZK9 1371 aa25.76■■□□□ 1.71
CHFR-224ENST00000545046 WDR97A6NE52 1622 aa25.7■■□□□ 1.7
CHFR-224ENST00000545046 TTBK1Q5TCY1 1321 aaPredicted RBP25.65■■□□□ 1.7
CHFR-224ENST00000545046 APLP2Q06481 763 aa25.64■■□□□ 1.7
CHFR-224ENST00000545046 CUL7Q14999 1698 aa25.63■■□□□ 1.69
CHFR-224ENST00000545046 ARAP1Q96P48 1450 aa25.62■■□□□ 1.69
CHFR-224ENST00000545046 MRC2Q9UBG0 1479 aa25.58■■□□□ 1.69
CHFR-224ENST00000545046 ABCA5Q8WWZ7 1642 aa25.57■■□□□ 1.68
CHFR-224ENST00000545046 ARHGAP35Q9NRY4 1499 aa25.54■■□□□ 1.68
CHFR-224ENST00000545046 GAPVD1Q14C86 1478 aa25.53■■□□□ 1.68
CHFR-224ENST00000545046 TARBP1Q13395 1621 aaKnown RBP25.53■■□□□ 1.68
CHFR-224ENST00000545046 TDRD9Q8NDG6 1382 aaKnown RBP25.53■■□□□ 1.68
CHFR-224ENST00000545046 ZEB1P37275 1124 aaPredicted RBP25.49■■□□□ 1.67
CHFR-224ENST00000545046 CTTNBP2Q8WZ74 1663 aa25.44■■□□□ 1.66
CHFR-224ENST00000545046 WDR62O43379 1518 aa25.4■■□□□ 1.66
CHFR-224ENST00000545046 PBRM1Q86U86 1689 aa25.38■■□□□ 1.65
CHFR-224ENST00000545046 ERCC6Q03468 1493 aa25.37■■□□□ 1.65
CHFR-224ENST00000545046 IFT140Q96RY7 1462 aa25.33■■□□□ 1.65
CHFR-224ENST00000545046 EFCAB5A4FU69 1503 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms