RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 NISCHQ9Y2I1 1504 aa23.76■■□□□ 1.39
CHFR-219ENST00000541341 ABCC9O60706 1549 aa21.61■■□□□ 1.05
CHFR-219ENST00000541341 CCDC180Q9P1Z9 1646 aa21.42■■□□□ 1.02
CHFR-219ENST00000541341 RB1CC1Q8TDY2 1594 aa20.42■□□□□ 0.86
CHFR-219ENST00000541341 DNAJC5BQ9UF47 199 aa20.33■□□□□ 0.85
CHFR-219ENST00000541341 DCAF8L2P0C7V8 631 aa20.27■□□□□ 0.84
CHFR-219ENST00000541341 UNC13AQ9UPW8 1703 aa20.22■□□□□ 0.83
CHFR-219ENST00000541341 NACADO15069 1562 aa20.2■□□□□ 0.82
CHFR-219ENST00000541341 PABPN1Q86U42 306 aaKnown RBP eCLIP20.09■□□□□ 0.81
CHFR-219ENST00000541341 BICRAQ9NZM4 1560 aa19.88■□□□□ 0.77
CHFR-219ENST00000541341 MYO15BQ96JP2 1530 aa19.75■□□□□ 0.75
CHFR-219ENST00000541341 ZCCHC6Q5VYS8 1495 aaKnown RBP19.66■□□□□ 0.74
CHFR-219ENST00000541341 SCRIBQ14160 1630 aa19.65■□□□□ 0.74
CHFR-219ENST00000541341 CC2D2AQ9P2K1 1620 aa19.51■□□□□ 0.71
CHFR-219ENST00000541341 DCAF1Q9Y4B6 1507 aa19.5■□□□□ 0.71
CHFR-219ENST00000541341 CECR2Q9BXF3 1484 aa19.4■□□□□ 0.7
CHFR-219ENST00000541341 EIF4G1Q04637 1599 aaKnown RBP19.39■□□□□ 0.69
CHFR-219ENST00000541341 SHROOM4Q9ULL8 1493 aa19.36■□□□□ 0.69
CHFR-219ENST00000541341 DNAJC5Q9H3Z4 198 aa18.64■□□□□ 0.57
CHFR-219ENST00000541341 SMARCA4P51532 1647 aa18.63■□□□□ 0.57
CHFR-219ENST00000541341 ERCC6Q03468 1493 aa18.62■□□□□ 0.57
CHFR-219ENST00000541341 NCAPD3P42695 1498 aa18.6■□□□□ 0.57
CHFR-219ENST00000541341 ATAD2BQ9ULI0 1458 aa18.59■□□□□ 0.57
CHFR-219ENST00000541341 NESP48681 1621 aa18.55■□□□□ 0.56
CHFR-219ENST00000541341 SMARCA2P51531 1590 aa18.53■□□□□ 0.56
CHFR-219ENST00000541341 CUX2O14529 1486 aa18.51■□□□□ 0.55
CHFR-219ENST00000541341 HMGXB3Q12766 1538 aa18.5■□□□□ 0.55
CHFR-219ENST00000541341 BAZ1BQ9UIG0 1483 aaKnown RBP18.46■□□□□ 0.54
CHFR-219ENST00000541341 BAZ1AQ9NRL2 1556 aaPredicted RBP18.45■□□□□ 0.54
CHFR-219ENST00000541341 KIF21AQ7Z4S6 1674 aa18.4■□□□□ 0.54
CHFR-219ENST00000541341 MROH2BQ7Z745 1585 aa18.38■□□□□ 0.53
CHFR-219ENST00000541341 THOC2Q8NI27 1593 aaKnown RBP18.35■□□□□ 0.53
CHFR-219ENST00000541341 PEG3Q9GZU2 1588 aa18.33■□□□□ 0.52
CHFR-219ENST00000541341 LAMC3Q9Y6N6 1575 aa18.29■□□□□ 0.52
CHFR-219ENST00000541341 WIZO95785 1651 aa18.26■□□□□ 0.51
CHFR-219ENST00000541341 PDS5BQ9NTI5 1447 aa18.13■□□□□ 0.49
CHFR-219ENST00000541341 CADPSQ9ULU8 1353 aa18.05■□□□□ 0.48
CHFR-219ENST00000541341 MRC2Q9UBG0 1479 aa18.03■□□□□ 0.48
CHFR-219ENST00000541341 WDR62O43379 1518 aa17.99■□□□□ 0.47
CHFR-219ENST00000541341 TRIM41Q8WV44 630 aa17.97■□□□□ 0.47
CHFR-219ENST00000541341 CEP164Q9UPV0 1460 aa17.95■□□□□ 0.46
CHFR-219ENST00000541341 FANCD2Q9BXW9 1451 aa17.92■□□□□ 0.46
CHFR-219ENST00000541341 PRDM2Q13029 1718 aa17.88■□□□□ 0.45
CHFR-219ENST00000541341 RSF1Q96T23 1441 aaPredicted RBP17.88■□□□□ 0.45
CHFR-219ENST00000541341 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
CHFR-219ENST00000541341 CFTRP13569 1480 aa17.82■□□□□ 0.44
CHFR-219ENST00000541341 URB2Q14146 1524 aaKnown RBP17.82■□□□□ 0.44
CHFR-219ENST00000541341 CCDC88BA6NC98 1476 aa17.69■□□□□ 0.42
CHFR-219ENST00000541341 OSCARQ8IYS5 282 aa17.66■□□□□ 0.42
CHFR-219ENST00000541341 ZNF608Q9ULD9 1512 aaPredicted RBP17.64■□□□□ 0.41
CHFR-219ENST00000541341 RIMBP3CA6NJZ7 1639 aa17.61■□□□□ 0.41
CHFR-219ENST00000541341 RIMBP3BA6NNM3 1639 aa17.61■□□□□ 0.41
CHFR-219ENST00000541341 RIMBP3Q9UFD9 1639 aa17.61■□□□□ 0.41
CHFR-219ENST00000541341 TOPBP1Q92547 1522 aa17.59■□□□□ 0.41
CHFR-219ENST00000541341 EIF4G3O43432 1585 aaKnown RBP17.57■□□□□ 0.4
CHFR-219ENST00000541341 CHD1O14646 1710 aa17.57■□□□□ 0.4
CHFR-219ENST00000541341 IFT140Q96RY7 1462 aa17.55■□□□□ 0.4
CHFR-219ENST00000541341 DNMBPQ6XZF7 1577 aa17.52■□□□□ 0.39
CHFR-219ENST00000541341 TARBP1Q13395 1621 aaKnown RBP17.47■□□□□ 0.39
CHFR-219ENST00000541341 ARHGEF11O15085 1522 aa17.46■□□□□ 0.39
CHFR-219ENST00000541341 AQRO60306 1485 aaKnown RBP eCLIP17.45■□□□□ 0.381e-14■■■■■ 26.9
CHFR-219ENST00000541341 ABCC8Q09428 1581 aa17.43■□□□□ 0.38
CHFR-219ENST00000541341 FBLN2P98095 1184 aa17.41■□□□□ 0.38
CHFR-219ENST00000541341 RAD54L2Q9Y4B4 1467 aa17.4■□□□□ 0.38
CHFR-219ENST00000541341 POLA1P09884 1462 aaPredicted RBP17.38■□□□□ 0.37
CHFR-219ENST00000541341 CYB5RLQ6IPT4 315 aa17.36■□□□□ 0.37
CHFR-219ENST00000541341 TDRD9Q8NDG6 1382 aaKnown RBP17.32■□□□□ 0.36
CHFR-219ENST00000541341 SUPT5HO00267 1087 aaKnown RBP17.3■□□□□ 0.36
CHFR-219ENST00000541341 FGD5Q6ZNL6 1462 aa17.3■□□□□ 0.36
CHFR-219ENST00000541341 SOGA1O94964 1423 aa17.29■□□□□ 0.36
CHFR-219ENST00000541341 ARAP1Q96P48 1450 aa17.28■□□□□ 0.36
CHFR-219ENST00000541341 CUX1P39880 1505 aa17.27■□□□□ 0.36
CHFR-219ENST00000541341 PBRM1Q86U86 1689 aa17.27■□□□□ 0.36
CHFR-219ENST00000541341 SNAPC4Q5SXM2 1469 aa17.27■□□□□ 0.36
CHFR-219ENST00000541341 TRHP20396 242 aaPredicted RBP17.25■□□□□ 0.35
CHFR-219ENST00000541341 WDR97A6NE52 1622 aa17.25■□□□□ 0.35
CHFR-219ENST00000541341 CLASP1Q7Z460 1538 aa17.18■□□□□ 0.34
CHFR-219ENST00000541341 SYNJ1O43426 1573 aa17.17■□□□□ 0.34
CHFR-219ENST00000541341 CHMP7Q8WUX9 453 aaPredicted RBP17.17■□□□□ 0.34
CHFR-219ENST00000541341 GRIN2BQ13224 1484 aa17.13■□□□□ 0.33
CHFR-219ENST00000541341 MAGI1Q96QZ7 1491 aaPredicted RBP17.12■□□□□ 0.33
CHFR-219ENST00000541341 SYNJ2O15056 1496 aa17.09■□□□□ 0.33
CHFR-219ENST00000541341 GAPVD1Q14C86 1478 aa17.09■□□□□ 0.33
CHFR-219ENST00000541341 ABCA5Q8WWZ7 1642 aa17.09■□□□□ 0.33
CHFR-219ENST00000541341 ERCC6L2Q5T890 1561 aa17.02■□□□□ 0.32
CHFR-219ENST00000541341 ABCA10Q8WWZ4 1543 aa17.01■□□□□ 0.31
CHFR-219ENST00000541341 BIVM-ERCC5R4GMW8 1640 aa16.99■□□□□ 0.31
CHFR-219ENST00000541341 ADAMTS12P58397 1594 aa16.98■□□□□ 0.31
CHFR-219ENST00000541341 CEP170Q5SW79 1584 aa16.96■□□□□ 0.31
CHFR-219ENST00000541341 GRIN2AQ12879 1464 aa16.94■□□□□ 0.3
CHFR-219ENST00000541341 TOP2BQ02880 1626 aa16.94■□□□□ 0.3
CHFR-219ENST00000541341 WRNQ14191 1432 aaPredicted RBP eCLIP16.91■□□□□ 0.34e-7■■■□□ 16.7
CHFR-219ENST00000541341 HRCP23327 699 aa16.88■□□□□ 0.29
CHFR-219ENST00000541341 SHROOM2Q13796 1616 aa16.85■□□□□ 0.29
CHFR-219ENST00000541341 KIF13AQ9H1H9 1805 aa16.85■□□□□ 0.29
CHFR-219ENST00000541341 NUP160Q12769 1436 aa16.83■□□□□ 0.28
CHFR-219ENST00000541341 FHAD1B1AJZ9 1412 aa16.81■□□□□ 0.28
CHFR-219ENST00000541341 AEBP2Q6ZN18 517 aaPredicted RBP16.8■□□□□ 0.28
CHFR-219ENST00000541341 ERICH3Q5RHP9 1530 aa16.8■□□□□ 0.28
CHFR-219ENST00000541341 PRG4Q92954 1404 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms