RNA–Protein interactions for RNA: ENST00000443047.6

CHFR-204, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2 BASIC

Gene CHFR, Length 2,990 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-204ENST00000443047 NISCHQ9Y2I1 1504 aa30.93■■■□□ 2.54
CHFR-204ENST00000443047 SHROOM4Q9ULL8 1493 aa26.53■■□□□ 1.84
CHFR-204ENST00000443047 CCDC180Q9P1Z9 1646 aa26.26■■□□□ 1.79
CHFR-204ENST00000443047 DCAF8L2P0C7V8 631 aa26.13■■□□□ 1.77
CHFR-204ENST00000443047 ZCCHC6Q5VYS8 1495 aaKnown RBP26.08■■□□□ 1.76
CHFR-204ENST00000443047 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
CHFR-204ENST00000443047 HRCP23327 699 aa25.5■■□□□ 1.67
CHFR-204ENST00000443047 PPARGC1BQ86YN6 1023 aaKnown RBP25.23■■□□□ 1.63
CHFR-204ENST00000443047 DCAF1Q9Y4B6 1507 aa25.2■■□□□ 1.62
CHFR-204ENST00000443047 PCGF6Q9BYE7 350 aa25.08■■□□□ 1.6
CHFR-204ENST00000443047 PELP1Q8IZL8 1130 aaKnown RBP24.98■■□□□ 1.59
CHFR-204ENST00000443047 ABCC9O60706 1549 aa24.92■■□□□ 1.58
CHFR-204ENST00000443047 CHIC1Q5VXU3 224 aa24.86■■□□□ 1.57
CHFR-204ENST00000443047 SCRIBQ14160 1630 aa24.85■■□□□ 1.57
CHFR-204ENST00000443047 MYO15BQ96JP2 1530 aa24.72■■□□□ 1.55
CHFR-204ENST00000443047 RSF1Q96T23 1441 aaPredicted RBP24.44■■□□□ 1.5
CHFR-204ENST00000443047 NACADO15069 1562 aa24.4■■□□□ 1.5
CHFR-204ENST00000443047 SCAF1Q9H7N4 1312 aaKnown RBP24.4■■□□□ 1.5
CHFR-204ENST00000443047 CECR2Q9BXF3 1484 aa24.3■■□□□ 1.48
CHFR-204ENST00000443047 LOC105371045A0A1W2PR82 267 aa24.27■■□□□ 1.48
CHFR-204ENST00000443047 RB1CC1Q8TDY2 1594 aa24.17■■□□□ 1.46
CHFR-204ENST00000443047 MROH2BQ7Z745 1585 aa24.13■■□□□ 1.45
CHFR-204ENST00000443047 MYT1Q01538 1121 aa24.04■■□□□ 1.44
CHFR-204ENST00000443047 WIZO95785 1651 aa23.99■■□□□ 1.43
CHFR-204ENST00000443047 TRIM41Q8WV44 630 aa23.98■■□□□ 1.43
CHFR-204ENST00000443047 FAM9AQ8IZU1 332 aaPredicted RBP23.97■■□□□ 1.43
CHFR-204ENST00000443047 TRIM26Q12899 539 aaPredicted RBP23.94■■□□□ 1.42
CHFR-204ENST00000443047 EHMT2Q96KQ7 1210 aa23.93■■□□□ 1.42
CHFR-204ENST00000443047 PABPN1Q86U42 306 aaKnown RBP eCLIP23.9■■□□□ 1.42
CHFR-204ENST00000443047 UNC13AQ9UPW8 1703 aa23.8■■□□□ 1.4
CHFR-204ENST00000443047 ZEB1P37275 1124 aaPredicted RBP23.77■■□□□ 1.4
CHFR-204ENST00000443047 BAZ1AQ9NRL2 1556 aaPredicted RBP23.74■■□□□ 1.39
CHFR-204ENST00000443047 NEUROD1Q13562 356 aa23.67■■□□□ 1.38
CHFR-204ENST00000443047 ACIN1Q9UKV3 1341 aaKnown RBP23.66■■□□□ 1.38
CHFR-204ENST00000443047 GTF3C3Q9Y5Q9 886 aa23.62■■□□□ 1.37
CHFR-204ENST00000443047 SMARCA4P51532 1647 aa23.61■■□□□ 1.37
CHFR-204ENST00000443047 BICRAQ9NZM4 1560 aa23.54■■□□□ 1.36
CHFR-204ENST00000443047 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
CHFR-204ENST00000443047 TOP2AP11388 1531 aaKnown RBP23.48■■□□□ 1.35
CHFR-204ENST00000443047 ABCC8Q09428 1581 aa23.42■■□□□ 1.34
CHFR-204ENST00000443047 SMARCA2P51531 1590 aa23.39■■□□□ 1.34
CHFR-204ENST00000443047 EIF4G1Q04637 1599 aaKnown RBP23.39■■□□□ 1.34
CHFR-204ENST00000443047 CENPBP07199 599 aaPredicted RBP23.34■■□□□ 1.33
CHFR-204ENST00000443047 DIEXFQ68CQ4 756 aaKnown RBP23.16■■□□□ 1.3
CHFR-204ENST00000443047 SOGA1O94964 1423 aa23.15■■□□□ 1.3
CHFR-204ENST00000443047 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.12■■□□□ 1.29
CHFR-204ENST00000443047 ATAD2BQ9ULI0 1458 aa23.11■■□□□ 1.29
CHFR-204ENST00000443047 RUSC2Q8N2Y8 1516 aa23.09■■□□□ 1.29
CHFR-204ENST00000443047 YTHDC1Q96MU7 727 aaKnown RBP23.07■■□□□ 1.28
CHFR-204ENST00000443047 CCER1Q8TC90 406 aaPredicted RBP23.06■■□□□ 1.28
CHFR-204ENST00000443047 PEG3Q9GZU2 1588 aa23.05■■□□□ 1.28
CHFR-204ENST00000443047 BAZ1BQ9UIG0 1483 aaKnown RBP23.05■■□□□ 1.28
CHFR-204ENST00000443047 TTBK1Q5TCY1 1321 aaPredicted RBP23.04■■□□□ 1.28
CHFR-204ENST00000443047 WRNQ14191 1432 aaPredicted RBP eCLIP22.97■■□□□ 1.271e-6■■■■■ 52.5
CHFR-204ENST00000443047 CSRNP3Q8WYN3 585 aa22.94■■□□□ 1.26
CHFR-204ENST00000443047 UBTFP17480 764 aaKnown RBP22.94■■□□□ 1.26
CHFR-204ENST00000443047 SYNJ1O43426 1573 aa22.87■■□□□ 1.25
CHFR-204ENST00000443047 CEP162Q5TB80 1403 aa22.84■■□□□ 1.25
CHFR-204ENST00000443047 RANGAP1P46060 587 aaPredicted RBP22.77■■□□□ 1.24
CHFR-204ENST00000443047 TNIKQ9UKE5 1360 aa22.74■■□□□ 1.23
CHFR-204ENST00000443047 BCL11AQ9H165 835 aa22.72■■□□□ 1.23
CHFR-204ENST00000443047 EEA1Q15075 1411 aa22.72■■□□□ 1.23
CHFR-204ENST00000443047 GOLGA3Q08378 1498 aa22.66■■□□□ 1.22
CHFR-204ENST00000443047 NCAPD3P42695 1498 aa22.64■■□□□ 1.22
CHFR-204ENST00000443047 RAPGEF2Q9Y4G8 1499 aa22.56■■□□□ 1.2
CHFR-204ENST00000443047 HMGXB3Q12766 1538 aa22.56■■□□□ 1.2
CHFR-204ENST00000443047 MIER1Q8N108 512 aa22.55■■□□□ 1.2
CHFR-204ENST00000443047 CEP164Q9UPV0 1460 aa22.55■■□□□ 1.2
CHFR-204ENST00000443047 ZNF316A6NFI3 1004 aaPredicted RBP22.54■■□□□ 1.2
CHFR-204ENST00000443047 TOP2BQ02880 1626 aa22.52■■□□□ 1.2
CHFR-204ENST00000443047 ANP32EQ9BTT0 268 aa22.47■■□□□ 1.19
CHFR-204ENST00000443047 CLIP1P30622 1438 aa22.47■■□□□ 1.19
CHFR-204ENST00000443047 KIF21BO75037 1637 aa22.45■■□□□ 1.18
CHFR-204ENST00000443047 CUX1P39880 1505 aa22.45■■□□□ 1.18
CHFR-204ENST00000443047 CFTRP13569 1480 aa22.42■■□□□ 1.18
CHFR-204ENST00000443047 BIVM-ERCC5R4GMW8 1640 aa22.39■■□□□ 1.18
CHFR-204ENST00000443047 HNRNPUL2Q1KMD3 747 aaKnown RBP22.32■■□□□ 1.16
CHFR-204ENST00000443047 CC2D2AQ9P2K1 1620 aa22.32■■□□□ 1.16
CHFR-204ENST00000443047 SUPT16HQ9Y5B9 1047 aaKnown RBP22.29■■□□□ 1.16
CHFR-204ENST00000443047 VPS8Q8N3P4 1428 aa22.28■■□□□ 1.16
CHFR-204ENST00000443047 TSHZ2Q9NRE2 1034 aa22.28■■□□□ 1.16
CHFR-204ENST00000443047 CADPSQ9ULU8 1353 aa22.27■■□□□ 1.16
CHFR-204ENST00000443047 APLP2Q06481 763 aa22.27■■□□□ 1.16
CHFR-204ENST00000443047 PRXQ9BXM0 1461 aa22.25■■□□□ 1.15
CHFR-204ENST00000443047 KIF27Q86VH2 1401 aa22.25■■□□□ 1.15
CHFR-204ENST00000443047 CUX2O14529 1486 aa22.18■■□□□ 1.14
CHFR-204ENST00000443047 DNAJC5BQ9UF47 199 aa22.15■■□□□ 1.14
CHFR-204ENST00000443047 NESP48681 1621 aa22.14■■□□□ 1.13
CHFR-204ENST00000443047 ERICH3Q5RHP9 1530 aa22.13■■□□□ 1.13
CHFR-204ENST00000443047 KANK4Q5T7N3 995 aaPredicted RBP22.12■■□□□ 1.13
CHFR-204ENST00000443047 ARAP1Q96P48 1450 aa22.12■■□□□ 1.13
CHFR-204ENST00000443047 FGD5Q6ZNL6 1462 aa22.11■■□□□ 1.13
CHFR-204ENST00000443047 IGF1RP08069 1367 aa22.09■■□□□ 1.13
CHFR-204ENST00000443047 FANCD2Q9BXW9 1451 aa22.07■■□□□ 1.12
CHFR-204ENST00000443047 PRDM2Q13029 1718 aa22.07■■□□□ 1.12
CHFR-204ENST00000443047 BCANQ96GW7 911 aa22.06■■□□□ 1.12
CHFR-204ENST00000443047 RAD54L2Q9Y4B4 1467 aa22.02■■□□□ 1.12
CHFR-204ENST00000443047 P3H3Q8IVL6 736 aa22■■□□□ 1.11
CHFR-204ENST00000443047 CARMIL1Q5VZK9 1371 aa22■■□□□ 1.11
CHFR-204ENST00000443047 ARHGAP35Q9NRY4 1499 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms