Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 RBM38-205ENST00000440234 686 ntTSL 2 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 CD276-201ENST00000318424 2738 ntTSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 WDR73-202ENST00000434634 5387 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CHKB-CPT1BH3BT56 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 PLEKHG2-203ENST00000425673 8132 ntAPPRIS P2 TSL 2 BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 PCF11-201ENST00000298281 7677 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 WIZP1-201ENST00000531444 2299 ntBASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
CHKB-CPT1BH3BT56 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 GDI1-215ENST00000630693 786 ntTSL 4 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 AC073592.3-201ENST00000625118 1834 ntBASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CHKB-CPT1BH3BT56 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CHKB-CPT1BH3BT56 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC10.26□□□□□ -0.77
CHKB-CPT1BH3BT56 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC10.26□□□□□ -0.77
CHKB-CPT1BH3BT56 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
CHKB-CPT1BH3BT56 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CHKB-CPT1BH3BT56 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
CHKB-CPT1BH3BT56 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC10.26□□□□□ -0.77
CHKB-CPT1BH3BT56 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC10.26□□□□□ -0.77
CHKB-CPT1BH3BT56 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CHKB-CPT1BH3BT56 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms