RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 DCAF8L2P0C7V8 631 aa21.95■■□□□ 1.1
USP38-201ENST00000307017 EHMT2Q96KQ7 1210 aa21.37■■□□□ 1.01
USP38-201ENST00000307017 SUPT5HO00267 1087 aaKnown RBP20.93■□□□□ 0.94
USP38-201ENST00000307017 TTBK1Q5TCY1 1321 aaPredicted RBP20.59■□□□□ 0.89
USP38-201ENST00000307017 SHROOM4Q9ULL8 1493 aa20.56■□□□□ 0.88
USP38-201ENST00000307017 PELP1Q8IZL8 1130 aaKnown RBP20.08■□□□□ 0.81
USP38-201ENST00000307017 FAM9AQ8IZU1 332 aaPredicted RBP20.05■□□□□ 0.8
USP38-201ENST00000307017 RANGAP1P46060 587 aaPredicted RBP20.01■□□□□ 0.79
USP38-201ENST00000307017 PCGF6Q9BYE7 350 aa20.01■□□□□ 0.79
USP38-201ENST00000307017 ERICH6Q7L0X2 663 aa19.96■□□□□ 0.79
USP38-201ENST00000307017 MYT1Q01538 1121 aa19.92■□□□□ 0.78
USP38-201ENST00000307017 YTHDC1Q96MU7 727 aaKnown RBP19.89■□□□□ 0.77
USP38-201ENST00000307017 APLP2Q06481 763 aa19.62■□□□□ 0.73
USP38-201ENST00000307017 PPARGC1BQ86YN6 1023 aaKnown RBP19.62■□□□□ 0.73
USP38-201ENST00000307017 ATP1B4Q9UN42 357 aaPredicted RBP19.54■□□□□ 0.72
USP38-201ENST00000307017 CCER1Q8TC90 406 aaPredicted RBP19.47■□□□□ 0.71
USP38-201ENST00000307017 CENPBP07199 599 aaPredicted RBP19.39■□□□□ 0.69
USP38-201ENST00000307017 CNGB1Q14028 1251 aaPredicted RBP19.35■□□□□ 0.69
USP38-201ENST00000307017 POLR3GLQ9BT43 218 aa19.1■□□□□ 0.65
USP38-201ENST00000307017 NEFLP07196 543 aa19.1■□□□□ 0.65
USP38-201ENST00000307017 ITGAEP38570 1179 aa18.95■□□□□ 0.62
USP38-201ENST00000307017 CHIC1Q5VXU3 224 aa18.94■□□□□ 0.62
USP38-201ENST00000307017 UBTFP17480 764 aaKnown RBP18.93■□□□□ 0.62
USP38-201ENST00000307017 TRIM41Q8WV44 630 aa18.9■□□□□ 0.62
USP38-201ENST00000307017 ZEB1P37275 1124 aaPredicted RBP18.79■□□□□ 0.6
USP38-201ENST00000307017 DAXXQ9UER7 740 aaPredicted RBP18.78■□□□□ 0.6
USP38-201ENST00000307017 BCANQ96GW7 911 aa18.71■□□□□ 0.59
USP38-201ENST00000307017 NISCHQ9Y2I1 1504 aa18.71■□□□□ 0.59
USP38-201ENST00000307017 HRCP23327 699 aa18.64■□□□□ 0.58
USP38-201ENST00000307017 LOC105371045A0A1W2PR82 267 aa18.63■□□□□ 0.57
USP38-201ENST00000307017 BCL11AQ9H165 835 aa18.63■□□□□ 0.57
USP38-201ENST00000307017 SLC4A1APQ9BWU0 796 aaKnown RBP18.62■□□□□ 0.57
USP38-201ENST00000307017 MYT1LQ9UL68 1186 aa18.62■□□□□ 0.57
USP38-201ENST00000307017 HNRNPUL2Q1KMD3 747 aaKnown RBP18.61■□□□□ 0.57
USP38-201ENST00000307017 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.49■□□□□ 0.55
USP38-201ENST00000307017 ZNF316A6NFI3 1004 aaPredicted RBP18.44■□□□□ 0.54
USP38-201ENST00000307017 CLSPNQ9HAW4 1339 aa18.43■□□□□ 0.54
USP38-201ENST00000307017 TRIM26Q12899 539 aaPredicted RBP18.41■□□□□ 0.54
USP38-201ENST00000307017 RTL5Q5HYW3 569 aaPredicted RBP18.35■□□□□ 0.53
USP38-201ENST00000307017 GTF3C3Q9Y5Q9 886 aa18.3■□□□□ 0.52
USP38-201ENST00000307017 DIEXFQ68CQ4 756 aaKnown RBP18.27■□□□□ 0.52
USP38-201ENST00000307017 NEUROD1Q13562 356 aa18.22■□□□□ 0.51
USP38-201ENST00000307017 SLC24A1O60721 1099 aa18.12■□□□□ 0.49
USP38-201ENST00000307017 NPM2Q86SE8 214 aaKnown RBP18.1■□□□□ 0.49
USP38-201ENST00000307017 ZNF326Q5BKZ1 582 aaKnown RBP18.08■□□□□ 0.48
USP38-201ENST00000307017 EIF5BO60841 1220 aaKnown RBP18.07■□□□□ 0.48
USP38-201ENST00000307017 FAM50AQ14320 339 aaKnown RBP18.05■□□□□ 0.48
USP38-201ENST00000307017 ARXQ96QS3 562 aa18■□□□□ 0.47
USP38-201ENST00000307017 TRIM52Q96A61 297 aa17.96■□□□□ 0.47
USP38-201ENST00000307017 CDK11AQ9UQ88 783 aaPredicted RBP17.88■□□□□ 0.45
USP38-201ENST00000307017 NBR1Q14596 966 aa17.85■□□□□ 0.45
USP38-201ENST00000307017 ARID3CA6NKF2 412 aa17.85■□□□□ 0.45
USP38-201ENST00000307017 CANXP27824 592 aaKnown RBP17.79■□□□□ 0.44
USP38-201ENST00000307017 SALL2Q9Y467 1007 aaPredicted RBP17.77■□□□□ 0.43
USP38-201ENST00000307017 ANP32CO43423 234 aa17.71■□□□□ 0.43
USP38-201ENST00000307017 SENP3-EIF4A1A0A087X0R7 540 aa17.7■□□□□ 0.42
USP38-201ENST00000307017 PLPPR3Q6T4P5 718 aa17.7■□□□□ 0.42
USP38-201ENST00000307017 FKBP8Q14318 412 aa17.67■□□□□ 0.42
USP38-201ENST00000307017 ZBTB47Q9UFB7 747 aaPredicted RBP17.67■□□□□ 0.42
USP38-201ENST00000307017 IRX6P78412 446 aaPredicted RBP17.66■□□□□ 0.42
USP38-201ENST00000307017 SENP3Q9H4L4 574 aaPredicted RBP17.65■□□□□ 0.42
USP38-201ENST00000307017 ACIN1Q9UKV3 1341 aaKnown RBP17.61■□□□□ 0.41
USP38-201ENST00000307017 P3H3Q8IVL6 736 aa17.6■□□□□ 0.41
USP38-201ENST00000307017 ANP32AP39687 249 aaKnown RBP17.58■□□□□ 0.4
USP38-201ENST00000307017 TPRNQ4KMQ1 711 aa17.51■□□□□ 0.39
USP38-201ENST00000307017 FAM9BQ8IZU0 186 aa17.49■□□□□ 0.39
USP38-201ENST00000307017 PLEKHG5O94827 1062 aa17.49■□□□□ 0.39
USP38-201ENST00000307017 FBLN2P98095 1184 aa17.48■□□□□ 0.39
USP38-201ENST00000307017 HIRIP3Q9BW71 556 aaPredicted RBP17.46■□□□□ 0.39
USP38-201ENST00000307017 RTN4Q9NQC3 1192 aaKnown RBP17.46■□□□□ 0.39
USP38-201ENST00000307017 HSP90AA1P07900 732 aaKnown RBP17.45■□□□□ 0.38
USP38-201ENST00000307017 ZNF777Q9ULD5 760 aaPredicted RBP17.39■□□□□ 0.37
USP38-201ENST00000307017 SCAF1Q9H7N4 1312 aaKnown RBP17.37■□□□□ 0.37
USP38-201ENST00000307017 HNRNPUQ00839 825 aaKnown RBP eCLIP17.36■□□□□ 0.37
USP38-201ENST00000307017 PABPN1Q86U42 306 aaKnown RBP eCLIP17.35■□□□□ 0.37
USP38-201ENST00000307017 DDX10Q13206 875 aaKnown RBP17.35■□□□□ 0.37
USP38-201ENST00000307017 AMER1Q5JTC6 1135 aaPredicted RBP17.33■□□□□ 0.37
USP38-201ENST00000307017 ANP32BQ92688 251 aaKnown RBP17.28■□□□□ 0.36
USP38-201ENST00000307017 CHGAP10645 457 aaKnown RBP17.27■□□□□ 0.36
USP38-201ENST00000307017 TULP1O00294 542 aaPredicted RBP17.25■□□□□ 0.35
USP38-201ENST00000307017 TAOK2Q9UL54 1235 aa17.25■□□□□ 0.35
USP38-201ENST00000307017 A0A0G2JS52 829 aa17.21■□□□□ 0.35
USP38-201ENST00000307017 NEFMP07197 916 aa17.21■□□□□ 0.35
USP38-201ENST00000307017 NCBP3Q53F19 620 aaKnown RBP17.2■□□□□ 0.34
USP38-201ENST00000307017 ZBTB7CA1YPR0 619 aa17.17■□□□□ 0.34
USP38-201ENST00000307017 CCDC136Q96JN2 1154 aa17.17■□□□□ 0.34
USP38-201ENST00000307017 ARID4BQ4LE39 1312 aaPredicted RBP17.13■□□□□ 0.33
USP38-201ENST00000307017 MIER1Q8N108 512 aa17.12■□□□□ 0.33
USP38-201ENST00000307017 CHIC2Q9UKJ5 165 aa17.11■□□□□ 0.33
USP38-201ENST00000307017 KDM2AQ9Y2K7 1162 aa17.11■□□□□ 0.33
USP38-201ENST00000307017 GLIPR1L2Q4G1C9 344 aa17.11■□□□□ 0.33
USP38-201ENST00000307017 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.1■□□□□ 0.33
USP38-201ENST00000307017 LAS1LQ9Y4W2 734 aaKnown RBP17.08■□□□□ 0.32
USP38-201ENST00000307017 UPF2Q9HAU5 1272 aaKnown RBP17.07■□□□□ 0.32
USP38-201ENST00000307017 NCLP19338 710 aaKnown RBP17.07■□□□□ 0.32
USP38-201ENST00000307017 ARID3AQ99856 593 aa17.02■□□□□ 0.32
USP38-201ENST00000307017 STAG3Q9UJ98 1225 aa16.99■□□□□ 0.31
USP38-201ENST00000307017 TMC1Q8TDI8 760 aa16.99■□□□□ 0.31
USP38-201ENST00000307017 MRS2Q9HD23 443 aa16.94■□□□□ 0.3
USP38-201ENST00000307017 NAP1L5Q96NT1 182 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms