RNA–Protein interactions for RNA: ENST00000261799.8

PDGFRB-201, Transcript of platelet derived growth factor receptor beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFRB, Length 5,717 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-201ENST00000261799 DCAF8L2P0C7V8 631 aa24.34■■□□□ 1.49
PDGFRB-201ENST00000261799 NISCHQ9Y2I1 1504 aa22.79■■□□□ 1.24
PDGFRB-201ENST00000261799 SUPT5HO00267 1087 aaKnown RBP22.27■■□□□ 1.16
PDGFRB-201ENST00000261799 FAM9AQ8IZU1 332 aaPredicted RBP22.13■■□□□ 1.13
PDGFRB-201ENST00000261799 SHROOM4Q9ULL8 1493 aa22.04■■□□□ 1.12
PDGFRB-201ENST00000261799 APLP2Q06481 763 aa21.7■■□□□ 1.06
PDGFRB-201ENST00000261799 EHMT2Q96KQ7 1210 aa21.68■■□□□ 1.06
PDGFRB-201ENST00000261799 ATP1B4Q9UN42 357 aaPredicted RBP21.12■□□□□ 0.97
PDGFRB-201ENST00000261799 RANGAP1P46060 587 aaPredicted RBP21.05■□□□□ 0.96
PDGFRB-201ENST00000261799 TTBK1Q5TCY1 1321 aaPredicted RBP20.85■□□□□ 0.93
PDGFRB-201ENST00000261799 PELP1Q8IZL8 1130 aaKnown RBP20.84■□□□□ 0.93
PDGFRB-201ENST00000261799 TRIM41Q8WV44 630 aa20.79■□□□□ 0.92
PDGFRB-201ENST00000261799 MYT1LQ9UL68 1186 aa20.76■□□□□ 0.91
PDGFRB-201ENST00000261799 UBTFP17480 764 aaKnown RBP20.71■□□□□ 0.91
PDGFRB-201ENST00000261799 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.58■□□□□ 0.88
PDGFRB-201ENST00000261799 HNRNPUL2Q1KMD3 747 aaKnown RBP20.58■□□□□ 0.88
PDGFRB-201ENST00000261799 ABCC9O60706 1549 aa20.39■□□□□ 0.85
PDGFRB-201ENST00000261799 PCGF6Q9BYE7 350 aa20.31■□□□□ 0.84
PDGFRB-201ENST00000261799 PABPN1Q86U42 306 aaKnown RBP eCLIP20.22■□□□□ 0.83
PDGFRB-201ENST00000261799 CCER1Q8TC90 406 aaPredicted RBP20.19■□□□□ 0.82
PDGFRB-201ENST00000261799 CHIC1Q5VXU3 224 aa20.18■□□□□ 0.82
PDGFRB-201ENST00000261799 ZEB1P37275 1124 aaPredicted RBP20.03■□□□□ 0.8
PDGFRB-201ENST00000261799 FBLN2P98095 1184 aa19.97■□□□□ 0.79
PDGFRB-201ENST00000261799 ITGAEP38570 1179 aa19.94■□□□□ 0.78
PDGFRB-201ENST00000261799 ERICH6Q7L0X2 663 aa19.89■□□□□ 0.77
PDGFRB-201ENST00000261799 POLR3GLQ9BT43 218 aa19.89■□□□□ 0.77
PDGFRB-201ENST00000261799 SLC4A1APQ9BWU0 796 aaKnown RBP19.89■□□□□ 0.77
PDGFRB-201ENST00000261799 CENPBP07199 599 aaPredicted RBP19.81■□□□□ 0.76
PDGFRB-201ENST00000261799 NEFLP07196 543 aa19.8■□□□□ 0.76
PDGFRB-201ENST00000261799 PPARGC1BQ86YN6 1023 aaKnown RBP19.76■□□□□ 0.75
PDGFRB-201ENST00000261799 BCANQ96GW7 911 aa19.63■□□□□ 0.73
PDGFRB-201ENST00000261799 ESF1Q9H501 851 aaKnown RBP19.59■□□□□ 0.73
PDGFRB-201ENST00000261799 FAM50AQ14320 339 aaKnown RBP19.59■□□□□ 0.73
PDGFRB-201ENST00000261799 TRIM52Q96A61 297 aa19.57■□□□□ 0.72
PDGFRB-201ENST00000261799 NPM1P06748 294 aaKnown RBP eCLIP19.54■□□□□ 0.72
PDGFRB-201ENST00000261799 CNGB1Q14028 1251 aaPredicted RBP19.46■□□□□ 0.71
PDGFRB-201ENST00000261799 YTHDC1Q96MU7 727 aaKnown RBP19.43■□□□□ 0.7
PDGFRB-201ENST00000261799 TRIM26Q12899 539 aaPredicted RBP19.4■□□□□ 0.7
PDGFRB-201ENST00000261799 DAXXQ9UER7 740 aaPredicted RBP19.38■□□□□ 0.69
PDGFRB-201ENST00000261799 CDK11AQ9UQ88 783 aaPredicted RBP19.33■□□□□ 0.69
PDGFRB-201ENST00000261799 PLPPR3Q6T4P5 718 aa19.32■□□□□ 0.68
PDGFRB-201ENST00000261799 SCRIBQ14160 1630 aa19.3■□□□□ 0.68
PDGFRB-201ENST00000261799 ARID3CA6NKF2 412 aa19.3■□□□□ 0.68
PDGFRB-201ENST00000261799 STAG3Q9UJ98 1225 aa19.28■□□□□ 0.68
PDGFRB-201ENST00000261799 SLC24A1O60721 1099 aa19.26■□□□□ 0.67
PDGFRB-201ENST00000261799 ZNF777Q9ULD5 760 aaPredicted RBP19.25■□□□□ 0.67
PDGFRB-201ENST00000261799 ZNF326Q5BKZ1 582 aaKnown RBP19.24■□□□□ 0.67
PDGFRB-201ENST00000261799 LOC105371045A0A1W2PR82 267 aa19.21■□□□□ 0.67
PDGFRB-201ENST00000261799 P3H3Q8IVL6 736 aa19.21■□□□□ 0.67
PDGFRB-201ENST00000261799 NEFMP07197 916 aa19.19■□□□□ 0.66
PDGFRB-201ENST00000261799 NEUROD1Q13562 356 aa19.13■□□□□ 0.65
PDGFRB-201ENST00000261799 ZBTB47Q9UFB7 747 aaPredicted RBP19.11■□□□□ 0.65
PDGFRB-201ENST00000261799 RB1CC1Q8TDY2 1594 aa19.1■□□□□ 0.65
PDGFRB-201ENST00000261799 CLSPNQ9HAW4 1339 aa19.08■□□□□ 0.65
PDGFRB-201ENST00000261799 CHMP7Q8WUX9 453 aaPredicted RBP19.08■□□□□ 0.64
PDGFRB-201ENST00000261799 CHGAP10645 457 aaKnown RBP19.06■□□□□ 0.64
PDGFRB-201ENST00000261799 CCDC180Q9P1Z9 1646 aa18.99■□□□□ 0.63
PDGFRB-201ENST00000261799 ERCC6Q03468 1493 aa18.94■□□□□ 0.62
PDGFRB-201ENST00000261799 CSRNP3Q8WYN3 585 aa18.92■□□□□ 0.62
PDGFRB-201ENST00000261799 ZNF316A6NFI3 1004 aaPredicted RBP18.88■□□□□ 0.61
PDGFRB-201ENST00000261799 CANXP27824 592 aaKnown RBP18.88■□□□□ 0.61
PDGFRB-201ENST00000261799 SCAF1Q9H7N4 1312 aaKnown RBP18.87■□□□□ 0.61
PDGFRB-201ENST00000261799 ARID4BQ4LE39 1312 aaPredicted RBP18.82■□□□□ 0.6
PDGFRB-201ENST00000261799 ANP32CO43423 234 aa18.79■□□□□ 0.6
PDGFRB-201ENST00000261799 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.79■□□□□ 0.6
PDGFRB-201ENST00000261799 HRCP23327 699 aa18.76■□□□□ 0.59
PDGFRB-201ENST00000261799 C14orf37Q86TY3 774 aa18.75■□□□□ 0.59
PDGFRB-201ENST00000261799 TSPY4P0CV99 314 aa18.74■□□□□ 0.59
PDGFRB-201ENST00000261799 TSPY10P0CW01 314 aa18.74■□□□□ 0.59
PDGFRB-201ENST00000261799 TRHP20396 242 aaPredicted RBP18.74■□□□□ 0.59
PDGFRB-201ENST00000261799 PPP1R15AO75807 674 aaPredicted RBP18.73■□□□□ 0.59
PDGFRB-201ENST00000261799 ZCCHC6Q5VYS8 1495 aaKnown RBP18.73■□□□□ 0.59
PDGFRB-201ENST00000261799 A0A0G2JS52 829 aa18.7■□□□□ 0.58
PDGFRB-201ENST00000261799 KCNH8Q96L42 1107 aa18.7■□□□□ 0.58
PDGFRB-201ENST00000261799 BCL11AQ9H165 835 aa18.7■□□□□ 0.58
PDGFRB-201ENST00000261799 NACADO15069 1562 aa18.69■□□□□ 0.58
PDGFRB-201ENST00000261799 HAP1P54257 671 aaPredicted RBP18.65■□□□□ 0.58
PDGFRB-201ENST00000261799 BAZ1BQ9UIG0 1483 aaKnown RBP18.62■□□□□ 0.57
PDGFRB-201ENST00000261799 PLEKHD1A6NEE1 506 aa18.61■□□□□ 0.57
PDGFRB-201ENST00000261799 ZBTB7CA1YPR0 619 aa18.6■□□□□ 0.57
PDGFRB-201ENST00000261799 NPM2Q86SE8 214 aaKnown RBP18.59■□□□□ 0.57
PDGFRB-201ENST00000261799 MTUS2Q5JR59 1369 aa18.58■□□□□ 0.56
PDGFRB-201ENST00000261799 CHIC2Q9UKJ5 165 aa18.55■□□□□ 0.56
PDGFRB-201ENST00000261799 DIEXFQ68CQ4 756 aaKnown RBP18.54■□□□□ 0.56
PDGFRB-201ENST00000261799 TONSLQ96HA7 1378 aa18.53■□□□□ 0.56
PDGFRB-201ENST00000261799 PLEKHG5O94827 1062 aa18.48■□□□□ 0.55
PDGFRB-201ENST00000261799 RTL5Q5HYW3 569 aaPredicted RBP18.46■□□□□ 0.55
PDGFRB-201ENST00000261799 RSF1Q96T23 1441 aaPredicted RBP18.45■□□□□ 0.54
PDGFRB-201ENST00000261799 SENP3Q9H4L4 574 aaPredicted RBP18.4■□□□□ 0.54
PDGFRB-201ENST00000261799 KDM2AQ9Y2K7 1162 aa18.39■□□□□ 0.53
PDGFRB-201ENST00000261799 ACIN1Q9UKV3 1341 aaKnown RBP18.34■□□□□ 0.53
PDGFRB-201ENST00000261799 WDR43Q15061 677 aaKnown RBP eCLIP18.32■□□□□ 0.52
PDGFRB-201ENST00000261799 MYT1Q01538 1121 aa18.31■□□□□ 0.52
PDGFRB-201ENST00000261799 KIF27Q86VH2 1401 aa18.3■□□□□ 0.52
PDGFRB-201ENST00000261799 HDGFP51858 240 aaKnown RBP18.3■□□□□ 0.52
PDGFRB-201ENST00000261799 CFDP1Q9UEE9 299 aaPredicted RBP18.3■□□□□ 0.52
PDGFRB-201ENST00000261799 LMOD2Q6P5Q4 547 aa18.26■□□□□ 0.51
PDGFRB-201ENST00000261799 EIF4G1Q04637 1599 aaKnown RBP18.25■□□□□ 0.51
PDGFRB-201ENST00000261799 TMC1Q8TDI8 760 aa18.23■□□□□ 0.51
PDGFRB-201ENST00000261799 PDS5BQ9NTI5 1447 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms