RNA–Protein interactions for RNA: YPL139C

UME1, Transcript of Component of both the Rpd3S and Rpd3L histone deacetylase complexes, yeastyeast

Gene UME1, Length 1,383 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UME1YPL139C FAP1P53971 965 aa16.25■□□□□ 0.19
UME1YPL139C MTC1P47018 478 aaKnown RBP15.7■□□□□ 0.1
UME1YPL139C PRY3P47033 881 aa15.36■□□□□ 0.05
UME1YPL139C MON2P48563 1636 aaPredicted RBP15.04■□□□□ -0
UME1YPL139C INO80P53115 1489 aa14.88□□□□□ -0.03
UME1YPL139C AAD16Q02895 342 aa14.47□□□□□ -0.09
UME1YPL139C YCK3P39962 524 aa14.46□□□□□ -0.1
UME1YPL139C SWR1Q05471 1514 aa14.41□□□□□ -0.1
UME1YPL139C TY1B-DR4Q07793 1604 aa14.39□□□□□ -0.11
UME1YPL139C TCB3Q03640 1545 aaKnown RBP14.35□□□□□ -0.11
UME1YPL139C HAA1Q12753 694 aaKnown RBP14.34□□□□□ -0.11
UME1YPL139C PRI1P10363 409 aa14.32□□□□□ -0.12
UME1YPL139C DNA2P38859 1522 aa14.3□□□□□ -0.12
UME1YPL139C SGS1P35187 1447 aa14.3□□□□□ -0.12
UME1YPL139C KOG1P38873 1557 aa14.04□□□□□ -0.16
UME1YPL139C HSL1P34244 1518 aa13.95□□□□□ -0.18
UME1YPL139C SPT6P23615 1451 aaKnown RBP13.87□□□□□ -0.19
UME1YPL139C SPA2P23201 1466 aaKnown RBP13.66□□□□□ -0.22
UME1YPL139C HIR3P47171 1648 aa13.63□□□□□ -0.23
UME1YPL139C RSE1Q04693 1361 aaKnown RBP13.49□□□□□ -0.25
UME1YPL139C ECM5Q03214 1411 aa13.44□□□□□ -0.26
UME1YPL139C ISW2Q08773 1120 aa13.43□□□□□ -0.26
UME1YPL139C TSR3Q12094 313 aaKnown RBP13.4□□□□□ -0.26
UME1YPL139C THO2P53552 1597 aaKnown RBP13.38□□□□□ -0.27
UME1YPL139C XRN1P22147 1528 aaKnown RBP13.38□□□□□ -0.27
UME1YPL139C BUD4P47136 1447 aa13.37□□□□□ -0.27
UME1YPL139C RPG1P38249 964 aaKnown RBP13.32□□□□□ -0.28
UME1YPL139C SSN2P38931 1420 aa13.32□□□□□ -0.28
UME1YPL139C MDS3P53094 1487 aa13.28□□□□□ -0.28
UME1YPL139C PEP1P32319 1579 aa13.2□□□□□ -0.3
UME1YPL139C REV3P14284 1504 aa13.17□□□□□ -0.3
UME1YPL139C ATG2P53855 1592 aa13.17□□□□□ -0.3
UME1YPL139C SIN3P22579 1536 aa13.02□□□□□ -0.33
UME1YPL139C TAF2P23255 1407 aa12.98□□□□□ -0.33
UME1YPL139C SSK2P53599 1579 aa12.93□□□□□ -0.34
UME1YPL139C YGL015CP33199 130 aa12.91□□□□□ -0.34
UME1YPL139C MRPL32P25348 183 aa12.9□□□□□ -0.34
UME1YPL139C SKI3P17883 1432 aaKnown RBP12.88□□□□□ -0.35
UME1YPL139C BPT1P14772 1559 aa12.84□□□□□ -0.35
UME1YPL139C ESP1Q03018 1630 aa12.83□□□□□ -0.36
UME1YPL139C DRS1P32892 752 aaKnown RBP12.73□□□□□ -0.37
UME1YPL139C BUD31P25337 157 aaPredicted RBP12.69□□□□□ -0.38
UME1YPL139C UFD4P33202 1483 aa12.66□□□□□ -0.38
UME1YPL139C SCC2Q04002 1493 aa12.66□□□□□ -0.38
UME1YPL139C YCF1P39109 1515 aaKnown RBP12.66□□□□□ -0.38
UME1YPL139C YPK9Q12697 1472 aa12.66□□□□□ -0.38
UME1YPL139C MYO2P19524 1574 aaKnown RBP12.61□□□□□ -0.39
UME1YPL139C RPO31P04051 1460 aa12.56□□□□□ -0.4
UME1YPL139C TY2B-LR1P0C2J3 1770 aa12.52□□□□□ -0.4
UME1YPL139C TY2B-FP0CX63 1770 aa12.52□□□□□ -0.4
UME1YPL139C TY2B-GR2P0CX64 1770 aa12.52□□□□□ -0.4
UME1YPL139C TY2B-CP25384 1770 aa12.52□□□□□ -0.4
UME1YPL139C TY2B-DR2Q03494 1770 aa12.52□□□□□ -0.4
UME1YPL139C TY1B-DR1Q03855 1755 aa12.52□□□□□ -0.4
UME1YPL139C TY2B-DR3Q07791 1770 aaKnown RBP12.52□□□□□ -0.4
UME1YPL139C TY2B-OR1Q12113 1770 aa12.52□□□□□ -0.4
UME1YPL139C TY2B-DR1Q12472 1770 aa12.52□□□□□ -0.4
UME1YPL139C TY2B-OR2Q12501 1770 aa12.52□□□□□ -0.4
UME1YPL139C CDC25P04821 1589 aa12.45□□□□□ -0.42
UME1YPL139C TY1B-BRQ12193 1756 aa12.44□□□□□ -0.42
UME1YPL139C TY1B-GR3Q12316 1755 aa12.44□□□□□ -0.42
UME1YPL139C TY1B-ORQ92393 1755 aa12.44□□□□□ -0.42
UME1YPL139C DNF1P32660 1571 aa12.43□□□□□ -0.42
UME1YPL139C CHD1P32657 1468 aa12.42□□□□□ -0.42
UME1YPL139C TY2B-BQ12491 1770 aa12.36□□□□□ -0.43
UME1YPL139C TY1B-DR3Q99231 1755 aa12.36□□□□□ -0.43
UME1YPL139C ESC1Q03661 1658 aaKnown RBP12.35□□□□□ -0.43
UME1YPL139C TOP2P06786 1428 aaKnown RBP12.34□□□□□ -0.43
UME1YPL139C RKR1Q04781 1562 aa12.33□□□□□ -0.44
UME1YPL139C TY1B-HO13535 1793 aa12.32□□□□□ -0.44
UME1YPL139C TY1B-DR5P0C2I2 1755 aa12.32□□□□□ -0.44
UME1YPL139C TY1B-DR6P0C2I3 1755 aa12.32□□□□□ -0.44
UME1YPL139C TY1B-LR2P0C2I5 1755 aa12.32□□□□□ -0.44
UME1YPL139C TY1B-LR3P0C2I6 1755 aaKnown RBP12.32□□□□□ -0.44
UME1YPL139C TY1B-PR1P0C2I9 1755 aaKnown RBP12.32□□□□□ -0.44
UME1YPL139C TY1B-PR2P0C2J0 1756 aa12.32□□□□□ -0.44
UME1YPL139C TY1B-PR3P0C2J1 1755 aaKnown RBP12.32□□□□□ -0.44
UME1YPL139C TY1B-JR1P47098 1755 aa12.32□□□□□ -0.44
UME1YPL139C TY1B-ML2Q03434 1755 aaKnown RBP12.32□□□□□ -0.44
UME1YPL139C TY1B-ER1Q03612 1755 aa12.32□□□□□ -0.44
UME1YPL139C TY1B-ML1Q04711 1755 aaKnown RBP12.32□□□□□ -0.44
UME1YPL139C TY1B-GR2Q12269 1755 aa12.32□□□□□ -0.44
UME1YPL139C TY1B-OLQ12273 1755 aa12.32□□□□□ -0.44
UME1YPL139C TY1B-PLQ12414 1755 aaKnown RBP12.32□□□□□ -0.44
UME1YPL139C POL1P13382 1468 aa12.32□□□□□ -0.44
UME1YPL139C PAN1P32521 1480 aa12.3□□□□□ -0.44
UME1YPL139C RPA190P10964 1664 aaKnown RBP12.27□□□□□ -0.45
UME1YPL139C RQC2Q12532 1038 aaKnown RBP12.23□□□□□ -0.45
UME1YPL139C STU1P38198 1513 aa12.23□□□□□ -0.45
UME1YPL139C YOR1P53049 1477 aa12.21□□□□□ -0.46
UME1YPL139C MMS22Q06164 1454 aa12.21□□□□□ -0.46
UME1YPL139C MET5P47169 1442 aa12.2□□□□□ -0.46
UME1YPL139C SMC4Q12267 1418 aa12.15□□□□□ -0.46
UME1YPL139C SPP41P38904 1435 aa12.1□□□□□ -0.47
UME1YPL139C TY1B-JR2P47100 1755 aaKnown RBP12.08□□□□□ -0.48
UME1YPL139C TY1B-ER2Q03619 1755 aa12.08□□□□□ -0.48
UME1YPL139C TY1B-MR1Q04214 1755 aa12.08□□□□□ -0.48
UME1YPL139C TY1B-MR2Q04670 1755 aaKnown RBP12.08□□□□□ -0.48
UME1YPL139C TY1B-LR1Q12088 1755 aaKnown RBP12.08□□□□□ -0.48
UME1YPL139C TY1B-NL1Q12112 1755 aa12.08□□□□□ -0.48
Retrieved 100 of 5,963 RNA–protein pairs in 30.3 ms