RNA–Protein interactions for RNA: YPL010W

RET3, Transcript of Zeta subunit of the coatomer complex (COPI), yeastyeast

Gene RET3, Length 570 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RET3YPL010W MTC1P47018 478 aaKnown RBP13.6□□□□□ -0.23
RET3YPL010W FAP1P53971 965 aa12.94□□□□□ -0.34
RET3YPL010W DRS1P32892 752 aaKnown RBP12.59□□□□□ -0.39
RET3YPL010W PRY3P47033 881 aa12.2□□□□□ -0.46
RET3YPL010W PRI1P10363 409 aa11.83□□□□□ -0.52
RET3YPL010W AAD16Q02895 342 aa11.82□□□□□ -0.52
RET3YPL010W YCK3P39962 524 aa11.58□□□□□ -0.56
RET3YPL010W ISW2Q08773 1120 aa11.37□□□□□ -0.59
RET3YPL010W HAA1Q12753 694 aaKnown RBP11.37□□□□□ -0.59
RET3YPL010W RPG1P38249 964 aaKnown RBP11.33□□□□□ -0.6
RET3YPL010W TSR3Q12094 313 aaKnown RBP11.16□□□□□ -0.62
RET3YPL010W DIP2Q12220 943 aaPredicted RBP11.04□□□□□ -0.64
RET3YPL010W AVT3P36062 692 aa10.71□□□□□ -0.69
RET3YPL010W MRPL32P25348 183 aa10.69□□□□□ -0.7
RET3YPL010W RSE1Q04693 1361 aaKnown RBP10.67□□□□□ -0.7
RET3YPL010W BFR2Q06631 534 aaKnown RBP10.5□□□□□ -0.73
RET3YPL010W YGL015CP33199 130 aa10.42□□□□□ -0.74
RET3YPL010W RPL17AP05740 184 aaKnown RBP10.35□□□□□ -0.75
RET3YPL010W RPL17BP46990 184 aaKnown RBP10.35□□□□□ -0.75
RET3YPL010W REB1P21538 810 aa10.33□□□□□ -0.76
RET3YPL010W CDC27P38042 758 aa10.1□□□□□ -0.79
RET3YPL010W SPT21P35209 758 aa9.92□□□□□ -0.82
RET3YPL010W YKR023WP36119 530 aaKnown RBP9.91□□□□□ -0.82
RET3YPL010W MAP2P38174 421 aaKnown RBP9.84□□□□□ -0.83
RET3YPL010W BUD31P25337 157 aaPredicted RBP9.83□□□□□ -0.84
RET3YPL010W UBP10P53874 792 aaPredicted RBP9.81□□□□□ -0.84
RET3YPL010W DCD1P06773 312 aa9.71□□□□□ -0.86
RET3YPL010W HOP09932 586 aa9.71□□□□□ -0.86
RET3YPL010W TFC8Q12308 588 aa9.69□□□□□ -0.86
RET3YPL010W RIM101P33400 625 aa9.61□□□□□ -0.87
RET3YPL010W SCY1P53009 804 aa9.52□□□□□ -0.89
RET3YPL010W SLX5P32828 619 aaKnown RBP9.41□□□□□ -0.9
RET3YPL010W TGL3P40308 642 aa9.4□□□□□ -0.9
RET3YPL010W TIF4632P39936 914 aaKnown RBP9.39□□□□□ -0.91
RET3YPL010W TFA1P36100 482 aa9.37□□□□□ -0.91
RET3YPL010W BCH2P36122 765 aa9.36□□□□□ -0.91
RET3YPL010W SIS1P25294 352 aaKnown RBP9.29□□□□□ -0.92
RET3YPL010W UBP9P39967 754 aa9.27□□□□□ -0.93
RET3YPL010W OXP1P28273 1286 aa9.25□□□□□ -0.93
RET3YPL010W YIL055CP40523 627 aaKnown RBP9.09□□□□□ -0.95
RET3YPL010W EPS1P40557 701 aa9.07□□□□□ -0.96
RET3YPL010W BDF1P35817 686 aa9.06□□□□□ -0.96
RET3YPL010W PTP3P40048 928 aa9.04□□□□□ -0.96
RET3YPL010W RSM7P47150 247 aa8.99□□□□□ -0.97
RET3YPL010W MST1P07236 462 aa8.95□□□□□ -0.98
RET3YPL010W YBL029C-AQ3E756 94 aa8.91□□□□□ -0.98
RET3YPL010W BBC1P47068 1157 aa8.9□□□□□ -0.98
RET3YPL010W YAH1Q12184 172 aaKnown RBP8.89□□□□□ -0.99
RET3YPL010W AI2P03876 854 aa8.88□□□□□ -0.99
RET3YPL010W YOR238WQ08634 303 aa8.88□□□□□ -0.99
RET3YPL010W YLR271WQ06152 274 aa8.83□□□□□ -1
RET3YPL010W NSR1P27476 414 aaKnown RBP RIP-Chip data8.81□□□□□ -1not detected
RET3YPL010W VNX1P42839 908 aa8.79□□□□□ -1
RET3YPL010W SSP1P38871 571 aa8.76□□□□□ -1.01
RET3YPL010W PSD2P53037 1138 aaKnown RBP8.73□□□□□ -1.01
RET3YPL010W YAP5P40574 245 aa8.71□□□□□ -1.02
RET3YPL010W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.71□□□□□ -1.02not detected
RET3YPL010W WSC3Q12215 556 aa8.7□□□□□ -1.02
RET3YPL010W SPP1Q03012 353 aa8.69□□□□□ -1.02
RET3YPL010W AIR2Q12476 344 aaKnown RBP8.58□□□□□ -1.04
RET3YPL010W TIF11P38912 153 aaKnown RBP8.57□□□□□ -1.04
RET3YPL010W INO80P53115 1489 aa8.57□□□□□ -1.04
RET3YPL010W MGA2P40578 1113 aa8.56□□□□□ -1.04
RET3YPL010W MRM1P25270 412 aa8.54□□□□□ -1.04
RET3YPL010W GTT3P39996 337 aa8.53□□□□□ -1.04
RET3YPL010W FKH1P40466 484 aa8.53□□□□□ -1.04
RET3YPL010W PIB1Q06651 286 aa8.5□□□□□ -1.05
RET3YPL010W YJL171CP46992 396 aa8.49□□□□□ -1.05
RET3YPL010W CST9Q06032 482 aa8.49□□□□□ -1.05
RET3YPL010W ULI1P43604 169 aa8.44□□□□□ -1.06
RET3YPL010W IOC2Q12072 812 aa8.44□□□□□ -1.06
RET3YPL010W LDB19Q12502 818 aa8.44□□□□□ -1.06
RET3YPL010W RTG3P38165 486 aa8.42□□□□□ -1.06
RET3YPL010W MON2P48563 1636 aaPredicted RBP8.41□□□□□ -1.06
RET3YPL010W VPS29P38759 282 aa8.41□□□□□ -1.06
RET3YPL010W YMR1P47147 688 aaKnown RBP RIP-Chip data8.4□□□□□ -1.06not detected
RET3YPL010W BMT6Q12291 365 aa8.34□□□□□ -1.07
RET3YPL010W DBP1P24784 617 aaKnown RBP8.32□□□□□ -1.08
RET3YPL010W MSB4Q12317 492 aa8.31□□□□□ -1.08
RET3YPL010W STS1P38637 319 aa8.29□□□□□ -1.08
RET3YPL010W RCR1P38212 213 aa8.27□□□□□ -1.09
RET3YPL010W SET4P42948 560 aa8.27□□□□□ -1.09
RET3YPL010W YOL036WQ08206 761 aa8.27□□□□□ -1.09
RET3YPL010W SAM3Q08986 587 aa8.27□□□□□ -1.09
RET3YPL010W EAP1P36041 632 aaKnown RBP8.26□□□□□ -1.09
RET3YPL010W VMA1P17255 1071 aaKnown RBP8.25□□□□□ -1.09
RET3YPL010W RTG1P32607 177 aa8.25□□□□□ -1.09
RET3YPL010W TRP5P00931 707 aaKnown RBP8.24□□□□□ -1.09
RET3YPL010W YFR006WP43590 535 aa8.23□□□□□ -1.09
RET3YPL010W NCR1Q12200 1170 aa8.2□□□□□ -1.1
RET3YPL010W YNL035CP53962 389 aaKnown RBP8.15□□□□□ -1.1
RET3YPL010W ABP1P15891 592 aaKnown RBP8.14□□□□□ -1.11
RET3YPL010W SEC61P32915 480 aa8.13□□□□□ -1.11
RET3YPL010W MAK11P20484 414 aaKnown RBP8.11□□□□□ -1.11
RET3YPL010W RAM2P29703 316 aa8.11□□□□□ -1.11
RET3YPL010W GYP5Q12344 894 aa8.09□□□□□ -1.11
RET3YPL010W DNA2P38859 1522 aa8.08□□□□□ -1.12
RET3YPL010W JIP4Q03361 876 aa8.05□□□□□ -1.12
RET3YPL010W DAN4P47179 1161 aa8.04□□□□□ -1.12
RET3YPL010W HTA1P04911 132 aaKnown RBP8.02□□□□□ -1.13
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms