RNA–Protein interactions for RNA: YNR001C

CIT1, Transcript of Citrate synthase, yeastyeast

Gene CIT1, Length 1,440 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CIT1YNR001C FAP1P53971 965 aa12.92□□□□□ -0.34
CIT1YNR001C MTC1P47018 478 aaKnown RBP12.66□□□□□ -0.38
CIT1YNR001C PRY3P47033 881 aa12.34□□□□□ -0.43
CIT1YNR001C YCK3P39962 524 aa11.72□□□□□ -0.53
CIT1YNR001C DRS1P32892 752 aaKnown RBP11.5□□□□□ -0.57
CIT1YNR001C HAA1Q12753 694 aaKnown RBP11.28□□□□□ -0.6
CIT1YNR001C AAD16Q02895 342 aa11.06□□□□□ -0.64
CIT1YNR001C PRI1P10363 409 aa11.05□□□□□ -0.64
CIT1YNR001C ISW2Q08773 1120 aa10.65□□□□□ -0.7
CIT1YNR001C BUD31P25337 157 aaPredicted RBP10.59□□□□□ -0.71
CIT1YNR001C RPG1P38249 964 aaKnown RBP10.51□□□□□ -0.73
CIT1YNR001C TSR3Q12094 313 aaKnown RBP10.34□□□□□ -0.75
CIT1YNR001C DIP2Q12220 943 aaPredicted RBP10.07□□□□□ -0.8
CIT1YNR001C MRPL32P25348 183 aa9.99□□□□□ -0.81
CIT1YNR001C RSE1Q04693 1361 aaKnown RBP9.87□□□□□ -0.83
CIT1YNR001C YGL015CP33199 130 aa9.8□□□□□ -0.84
CIT1YNR001C AVT3P36062 692 aa9.77□□□□□ -0.85
CIT1YNR001C SIS1P25294 352 aaKnown RBP9.71□□□□□ -0.86
CIT1YNR001C REB1P21538 810 aa9.6□□□□□ -0.87
CIT1YNR001C RPL17AP05740 184 aaKnown RBP9.57□□□□□ -0.88
CIT1YNR001C RPL17BP46990 184 aaKnown RBP9.57□□□□□ -0.88
CIT1YNR001C BFR2Q06631 534 aaKnown RBP9.56□□□□□ -0.88
CIT1YNR001C CDC27P38042 758 aa9.35□□□□□ -0.91
CIT1YNR001C UBP10P53874 792 aaPredicted RBP9.26□□□□□ -0.93
CIT1YNR001C YKR023WP36119 530 aaKnown RBP9.18□□□□□ -0.94
CIT1YNR001C SPT21P35209 758 aa9.15□□□□□ -0.94
CIT1YNR001C MAP2P38174 421 aaKnown RBP9.14□□□□□ -0.95
CIT1YNR001C TFC8Q12308 588 aa9□□□□□ -0.97
CIT1YNR001C HOP09932 586 aa8.95□□□□□ -0.98
CIT1YNR001C DCD1P06773 312 aa8.9□□□□□ -0.98
CIT1YNR001C TIF4632P39936 914 aaKnown RBP8.87□□□□□ -0.99
CIT1YNR001C TGL3P40308 642 aa8.84□□□□□ -0.99
CIT1YNR001C SCY1P53009 804 aa8.83□□□□□ -1
CIT1YNR001C SLX5P32828 619 aaKnown RBP8.8□□□□□ -1
CIT1YNR001C UBP9P39967 754 aa8.79□□□□□ -1
CIT1YNR001C RIM101P33400 625 aa8.75□□□□□ -1.01
CIT1YNR001C BCH2P36122 765 aa8.66□□□□□ -1.02
CIT1YNR001C OXP1P28273 1286 aa8.48□□□□□ -1.05
CIT1YNR001C TFA1P36100 482 aa8.48□□□□□ -1.05
CIT1YNR001C RGA2Q06407 1009 aa8.43□□□□□ -1.06
CIT1YNR001C MST1P07236 462 aa8.42□□□□□ -1.06
CIT1YNR001C EPS1P40557 701 aa8.41□□□□□ -1.06
CIT1YNR001C BDF1P35817 686 aa8.39□□□□□ -1.07
CIT1YNR001C YOR238WQ08634 303 aa8.32□□□□□ -1.08
CIT1YNR001C NSR1P27476 414 aaKnown RBP RIP-Chip data8.31□□□□□ -1.08not detected
CIT1YNR001C YBL029C-AQ3E756 94 aa8.3□□□□□ -1.08
CIT1YNR001C PTP3P40048 928 aa8.24□□□□□ -1.09
CIT1YNR001C YIL055CP40523 627 aaKnown RBP8.22□□□□□ -1.09
CIT1YNR001C VNX1P42839 908 aa8.22□□□□□ -1.09
CIT1YNR001C YAP5P40574 245 aa8.18□□□□□ -1.1
CIT1YNR001C YAH1Q12184 172 aaKnown RBP8.18□□□□□ -1.1
CIT1YNR001C BBC1P47068 1157 aa8.17□□□□□ -1.1
CIT1YNR001C RSM7P47150 247 aa8.16□□□□□ -1.1
CIT1YNR001C SPP1Q03012 353 aa8.13□□□□□ -1.11
CIT1YNR001C AI2P03876 854 aa8.1□□□□□ -1.11
CIT1YNR001C YLR271WQ06152 274 aa8.09□□□□□ -1.11
CIT1YNR001C WSC3Q12215 556 aa8.05□□□□□ -1.12
CIT1YNR001C TIF11P38912 153 aaKnown RBP8.04□□□□□ -1.12
CIT1YNR001C AIR2Q12476 344 aaKnown RBP8.04□□□□□ -1.12
CIT1YNR001C FKH1P40466 484 aa8.03□□□□□ -1.12
CIT1YNR001C YJL171CP46992 396 aa8□□□□□ -1.13
CIT1YNR001C GTT3P39996 337 aa7.99□□□□□ -1.13
CIT1YNR001C PSD2P53037 1138 aaKnown RBP7.96□□□□□ -1.13
CIT1YNR001C SSP1P38871 571 aa7.95□□□□□ -1.14
CIT1YNR001C LDB19Q12502 818 aa7.9□□□□□ -1.14
CIT1YNR001C IOC2Q12072 812 aa7.89□□□□□ -1.15
CIT1YNR001C ULI1P43604 169 aa7.88□□□□□ -1.15
CIT1YNR001C BMT6Q12291 365 aa7.86□□□□□ -1.15
CIT1YNR001C MSB4Q12317 492 aa7.84□□□□□ -1.15
CIT1YNR001C CST9Q06032 482 aa7.82□□□□□ -1.16
CIT1YNR001C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.82□□□□□ -1.16not detected
CIT1YNR001C MRM1P25270 412 aa7.81□□□□□ -1.16
CIT1YNR001C EAP1P36041 632 aaKnown RBP7.8□□□□□ -1.16
CIT1YNR001C PIB1Q06651 286 aa7.78□□□□□ -1.16
CIT1YNR001C MGA2P40578 1113 aa7.74□□□□□ -1.17
CIT1YNR001C YOL036WQ08206 761 aa7.71□□□□□ -1.17
CIT1YNR001C RTG1P32607 177 aa7.7□□□□□ -1.18
CIT1YNR001C TRP5P00931 707 aaKnown RBP7.68□□□□□ -1.18
CIT1YNR001C VPS29P38759 282 aa7.68□□□□□ -1.18
CIT1YNR001C SET4P42948 560 aa7.67□□□□□ -1.18
CIT1YNR001C YMR1P47147 688 aaKnown RBP RIP-Chip data7.67□□□□□ -1.18not detected
CIT1YNR001C NCR1Q12200 1170 aa7.67□□□□□ -1.18
CIT1YNR001C SEC61P32915 480 aa7.66□□□□□ -1.18
CIT1YNR001C YNL035CP53962 389 aaKnown RBP7.66□□□□□ -1.18
CIT1YNR001C RCR1P38212 213 aa7.64□□□□□ -1.19
CIT1YNR001C DBP1P24784 617 aaKnown RBP7.61□□□□□ -1.19
CIT1YNR001C RTG3P38165 486 aa7.61□□□□□ -1.19
CIT1YNR001C SAM3Q08986 587 aa7.61□□□□□ -1.19
CIT1YNR001C RQC2Q12532 1038 aaKnown RBP7.61□□□□□ -1.19
CIT1YNR001C VMA1P17255 1071 aaKnown RBP7.6□□□□□ -1.19
CIT1YNR001C STS1P38637 319 aa7.6□□□□□ -1.19
CIT1YNR001C YFR006WP43590 535 aa7.58□□□□□ -1.2
CIT1YNR001C TFG1P41895 735 aaPredicted RBP7.54□□□□□ -1.2
CIT1YNR001C ABP1P15891 592 aaKnown RBP7.52□□□□□ -1.2
CIT1YNR001C RGA1P39083 1007 aa7.52□□□□□ -1.2
CIT1YNR001C JIP4Q03361 876 aa7.52□□□□□ -1.2
CIT1YNR001C DAN4P47179 1161 aa7.51□□□□□ -1.21
CIT1YNR001C BCK2P33306 851 aa7.48□□□□□ -1.21
CIT1YNR001C SAP30P38429 201 aa7.47□□□□□ -1.21
CIT1YNR001C CHL1P22516 861 aaPredicted RBP7.46□□□□□ -1.21
Retrieved 100 of 5,963 RNA–protein pairs in 38.1 ms