RNA–Protein interactions for RNA: YMR107W

SPG4, Transcript of Protein required for high temperature survival during stationary phase, yeastyeast

Gene SPG4, Length 348 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPG4YMR107W MTC1P47018 478 aaKnown RBP10.75□□□□□ -0.69
SPG4YMR107W DRS1P32892 752 aaKnown RBP10.38□□□□□ -0.75
SPG4YMR107W FAP1P53971 965 aa9.33□□□□□ -0.92
SPG4YMR107W DIP2Q12220 943 aaPredicted RBP8.97□□□□□ -0.97
SPG4YMR107W PRI1P10363 409 aa8.88□□□□□ -0.99
SPG4YMR107W ISW2Q08773 1120 aa8.84□□□□□ -0.99
SPG4YMR107W AAD16Q02895 342 aa8.78□□□□□ -1
SPG4YMR107W BFR2Q06631 534 aaKnown RBP8.78□□□□□ -1
SPG4YMR107W PRY3P47033 881 aa8.75□□□□□ -1.01
SPG4YMR107W RPG1P38249 964 aaKnown RBP8.74□□□□□ -1.01
SPG4YMR107W AVT3P36062 692 aa8.73□□□□□ -1.01
SPG4YMR107W RSE1Q04693 1361 aaKnown RBP8.59□□□□□ -1.03
SPG4YMR107W SPA2P23201 1466 aaKnown RBP8.52□□□□□ -1.05
SPG4YMR107W SGS1P35187 1447 aa8.46□□□□□ -1.05
SPG4YMR107W TSR3Q12094 313 aaKnown RBP8.43□□□□□ -1.06
SPG4YMR107W SSN2P38931 1420 aa8.41□□□□□ -1.06
SPG4YMR107W RPL17AP05740 184 aaKnown RBP8.3□□□□□ -1.08
SPG4YMR107W RPL17BP46990 184 aaKnown RBP8.3□□□□□ -1.08
SPG4YMR107W YCK3P39962 524 aa8.26□□□□□ -1.09
SPG4YMR107W REB1P21538 810 aa8.24□□□□□ -1.09
SPG4YMR107W HAA1Q12753 694 aaKnown RBP8.21□□□□□ -1.1
SPG4YMR107W SKI3P17883 1432 aaKnown RBP8.1□□□□□ -1.11
SPG4YMR107W INO80P53115 1489 aa8.08□□□□□ -1.12
SPG4YMR107W MRPL32P25348 183 aa8.08□□□□□ -1.12
SPG4YMR107W SPT21P35209 758 aa7.96□□□□□ -1.14
SPG4YMR107W TFA1P36100 482 aa7.94□□□□□ -1.14
SPG4YMR107W NSR1P27476 414 aaKnown RBP RIP-Chip data7.9□□□□□ -1.14not detected
SPG4YMR107W CHD1P32657 1468 aa7.85□□□□□ -1.15
SPG4YMR107W NOP2P40991 618 aaKnown RBP7.81□□□□□ -1.16
SPG4YMR107W YKR023WP36119 530 aaKnown RBP7.79□□□□□ -1.16
SPG4YMR107W MMS22Q06164 1454 aa7.75□□□□□ -1.17
SPG4YMR107W RIM101P33400 625 aa7.74□□□□□ -1.17
SPG4YMR107W CDC27P38042 758 aa7.74□□□□□ -1.17
SPG4YMR107W TCB3Q03640 1545 aaKnown RBP7.73□□□□□ -1.17
SPG4YMR107W XRN1P22147 1528 aaKnown RBP7.71□□□□□ -1.18
SPG4YMR107W TY1B-DR4Q07793 1604 aa7.7□□□□□ -1.18
SPG4YMR107W HOP09932 586 aa7.65□□□□□ -1.18
SPG4YMR107W YGL015CP33199 130 aa7.65□□□□□ -1.18
SPG4YMR107W UFD4P33202 1483 aa7.64□□□□□ -1.19
SPG4YMR107W TFC8Q12308 588 aa7.64□□□□□ -1.19
SPG4YMR107W HSL1P34244 1518 aa7.63□□□□□ -1.19
SPG4YMR107W DCD1P06773 312 aa7.61□□□□□ -1.19
SPG4YMR107W TRM732Q03496 1420 aa7.54□□□□□ -1.2
SPG4YMR107W HIR3P47171 1648 aa7.52□□□□□ -1.2
SPG4YMR107W SPT6P23615 1451 aaKnown RBP7.52□□□□□ -1.21
SPG4YMR107W MON2P48563 1636 aaPredicted RBP7.52□□□□□ -1.21
SPG4YMR107W SIN3P22579 1536 aa7.51□□□□□ -1.21
SPG4YMR107W OXP1P28273 1286 aa7.5□□□□□ -1.21
SPG4YMR107W NUP170P38181 1502 aa7.5□□□□□ -1.21
SPG4YMR107W UBP10P53874 792 aaPredicted RBP7.48□□□□□ -1.21
SPG4YMR107W SSK2P53599 1579 aa7.46□□□□□ -1.21
SPG4YMR107W MAP2P38174 421 aaKnown RBP7.46□□□□□ -1.22
SPG4YMR107W REV3P14284 1504 aa7.46□□□□□ -1.22
SPG4YMR107W STU1P38198 1513 aa7.46□□□□□ -1.22
SPG4YMR107W IKI3Q06706 1349 aaKnown RBP7.43□□□□□ -1.22
SPG4YMR107W SPP41P38904 1435 aa7.42□□□□□ -1.22
SPG4YMR107W THO2P53552 1597 aaKnown RBP7.42□□□□□ -1.22
SPG4YMR107W POL1P13382 1468 aa7.41□□□□□ -1.22
SPG4YMR107W BCH2P36122 765 aa7.4□□□□□ -1.22
SPG4YMR107W STH1P32597 1359 aa7.39□□□□□ -1.23
SPG4YMR107W PTP3P40048 928 aa7.39□□□□□ -1.23
SPG4YMR107W YIL055CP40523 627 aaKnown RBP7.39□□□□□ -1.23
SPG4YMR107W ECM5Q03214 1411 aa7.38□□□□□ -1.23
SPG4YMR107W SSM4P40318 1319 aa7.38□□□□□ -1.23
SPG4YMR107W SCY1P53009 804 aa7.38□□□□□ -1.23
SPG4YMR107W BPT1P14772 1559 aa7.37□□□□□ -1.23
SPG4YMR107W ENP1P38333 483 aaKnown RBP7.37□□□□□ -1.23
SPG4YMR107W SCC2Q04002 1493 aa7.36□□□□□ -1.23
SPG4YMR107W YAH1Q12184 172 aaKnown RBP7.34□□□□□ -1.23
SPG4YMR107W ESP1Q03018 1630 aa7.34□□□□□ -1.24
SPG4YMR107W YTA7P40340 1379 aa7.33□□□□□ -1.24
SPG4YMR107W MYO2P19524 1574 aaKnown RBP7.32□□□□□ -1.24
SPG4YMR107W RSM7P47150 247 aa7.28□□□□□ -1.24
SPG4YMR107W DNA2P38859 1522 aa7.27□□□□□ -1.25
SPG4YMR107W PRS1P32895 427 aaKnown RBP7.27□□□□□ -1.25
SPG4YMR107W PEP1P32319 1579 aa7.25□□□□□ -1.25
SPG4YMR107W SLX5P32828 619 aaKnown RBP7.25□□□□□ -1.25
SPG4YMR107W TAF2P23255 1407 aa7.25□□□□□ -1.25
SPG4YMR107W EBP2P36049 427 aaKnown RBP7.24□□□□□ -1.25
SPG4YMR107W EPS1P40557 701 aa7.24□□□□□ -1.25
SPG4YMR107W SPT7P35177 1332 aa7.24□□□□□ -1.25
SPG4YMR107W YPR148CQ06523 435 aa7.23□□□□□ -1.25
SPG4YMR107W MYO4P32492 1471 aa7.23□□□□□ -1.25
SPG4YMR107W YOR1P53049 1477 aa7.23□□□□□ -1.25
SPG4YMR107W YPK9Q12697 1472 aa7.22□□□□□ -1.25
SPG4YMR107W BUD4P47136 1447 aa7.21□□□□□ -1.25
SPG4YMR107W YLR271WQ06152 274 aa7.21□□□□□ -1.26
SPG4YMR107W SWR1Q05471 1514 aa7.21□□□□□ -1.26
SPG4YMR107W BDF1P35817 686 aa7.2□□□□□ -1.26
SPG4YMR107W SSP1P38871 571 aa7.2□□□□□ -1.26
SPG4YMR107W AI2P03876 854 aa7.19□□□□□ -1.26
SPG4YMR107W SAS10Q12136 610 aaPredicted RBP7.19□□□□□ -1.26
SPG4YMR107W PDR10P51533 1564 aa7.19□□□□□ -1.26
SPG4YMR107W MLP2P40457 1679 aa7.19□□□□□ -1.26
SPG4YMR107W SNQ2P32568 1501 aaKnown RBP7.18□□□□□ -1.26
SPG4YMR107W YCF1P39109 1515 aaKnown RBP7.18□□□□□ -1.26
SPG4YMR107W TIF4632P39936 914 aaKnown RBP7.17□□□□□ -1.26
SPG4YMR107W POL5P39985 1022 aaKnown RBP7.17□□□□□ -1.26
SPG4YMR107W BBC1P47068 1157 aa7.17□□□□□ -1.26
SPG4YMR107W YLR419WQ06698 1435 aaKnown RBP7.16□□□□□ -1.26
Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms