Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 YML009W-BYML009W-B 477 nt30.04■■■□□ 2.4
SSM4P40318 NSR1YGR159C 1245 nt29.51■■■□□ 2.32
SSM4P40318 NOP1YDL014W 984 nt28.94■■■□□ 2.22
SSM4P40318 YKL036CYKL036C 393 nt26.94■■□□□ 1.9
SSM4P40318 MDJ1YFL016C 1536 nt26.48■■□□□ 1.83
SSM4P40318 Q0297Q0297 156 nt25.47■■□□□ 1.67
SSM4P40318 SRX1YKL086W 384 nt25.41■■□□□ 1.66
SSM4P40318 YJL027CYJL027C 417 nt25.21■■□□□ 1.63
SSM4P40318 SCS3YGL126W 1143 nt24.73■■□□□ 1.55
SSM4P40318 YCR051WYCR051W 669 nt24.21■■□□□ 1.47
SSM4P40318 DBP2YNL112W 1641 nt23.44■■□□□ 1.34
SSM4P40318 YOL085CYOL085C 342 nt23.4■■□□□ 1.34
SSM4P40318 PKP1YIL042C 1185 nt23.22■■□□□ 1.31
SSM4P40318 TRN1tP(UGG)A 72 nt23.03■■□□□ 1.28
SSM4P40318 SUF9tP(UGG)F 72 nt23.03■■□□□ 1.28
SSM4P40318 SUF8tP(UGG)H 72 nt23.03■■□□□ 1.28
SSM4P40318 tP(UGG)LtP(UGG)L 72 nt23.03■■□□□ 1.28
SSM4P40318 SUF7tP(UGG)M 72 nt23.03■■□□□ 1.28
SSM4P40318 tP(UGG)N1tP(UGG)N1 72 nt23.03■■□□□ 1.28
SSM4P40318 tP(UGG)N2tP(UGG)N2 72 nt23.03■■□□□ 1.28
SSM4P40318 tP(UGG)O1tP(UGG)O1 72 nt23.03■■□□□ 1.28
SSM4P40318 SUF11tP(UGG)O2 72 nt23.03■■□□□ 1.28
SSM4P40318 RPP1BYDL130W 321 nt22.88■■□□□ 1.25
SSM4P40318 CCC1YLR220W 969 nt22.86■■□□□ 1.25
SSM4P40318 YBR190WYBR190W 312 nt22.27■■□□□ 1.16
SSM4P40318 SCJ1YMR214W 1134 nt22.07■■□□□ 1.12
SSM4P40318 ATS1YAL020C 1002 nt22.04■■□□□ 1.12
SSM4P40318 PET122YER153C 765 nt22.03■■□□□ 1.12
SSM4P40318 RTC3YHR087W 336 nt21.87■■□□□ 1.09
SSM4P40318 tP(UGG)O3tP(UGG)O3 72 nt21.8■■□□□ 1.08
SSM4P40318 RVS167YDR388W 1449 nt21.76■■□□□ 1.07
SSM4P40318 SCR1SCR1 522 nt21.55■■□□□ 1.04
SSM4P40318 RRN5YLR141W 1092 nt21.32■■□□□ 1
SSM4P40318 SHR5YOL110W 714 nt21.12■□□□□ 0.97
SSM4P40318 YDJ1YNL064C 1230 nt20.95■□□□□ 0.94
SSM4P40318 RSB1YOR049C 1065 nt20.92■□□□□ 0.94
SSM4P40318 YER088W-BYER088W-B 147 nt20.91■□□□□ 0.94
SSM4P40318 DEP1YAL013W 1218 nt20.73■□□□□ 0.91
SSM4P40318 GAR1YHR089C 618 nt20.65■□□□□ 0.9
SSM4P40318 URN1YPR152C 1398 nt20.57■□□□□ 0.88
SSM4P40318 PST2YDR032C 597 nt20.39■□□□□ 0.85
SSM4P40318 PUT4YOR348C 1884 nt20.3■□□□□ 0.84
SSM4P40318 OPI9YLR338W 858 nt20.16■□□□□ 0.82
SSM4P40318 SAH1YER043C 1350 nt20.15■□□□□ 0.82
SSM4P40318 YNL208WYNL208W 600 nt20.14■□□□□ 0.81
SSM4P40318 RPN10YHR200W 807 nt20.05■□□□□ 0.8
SSM4P40318 ARE1YCR048W 1833 nt20.01■□□□□ 0.79
SSM4P40318 TIR1YER011W 765 nt19.9■□□□□ 0.78
SSM4P40318 YHR049C-AYHR049C-A 297 nt19.78■□□□□ 0.76
SSM4P40318 SSA1YAL005C 1929 nt19.74■□□□□ 0.75
SSM4P40318 POA1YBR022W 534 nt19.71■□□□□ 0.75
SSM4P40318 SRB2YHR041C 633 nt19.69■□□□□ 0.74
SSM4P40318 SHU1YHL006C 453 nt19.67■□□□□ 0.74
SSM4P40318 YKL097CYKL097C 411 nt19.62■□□□□ 0.73
SSM4P40318 YJR018WYJR018W 363 nt19.55■□□□□ 0.72
SSM4P40318 YJR120WYJR120W 351 nt19.53■□□□□ 0.72
SSM4P40318 PUN1YLR414C 792 nt19.51■□□□□ 0.71
SSM4P40318 YAL037C-BYAL037C-B 975 nt19.44■□□□□ 0.7
SSM4P40318 PTC2YER089C 1395 nt19.39■□□□□ 0.69
SSM4P40318 BUD23YCR047C 828 nt19.3■□□□□ 0.68
SSM4P40318 BSC6YOL137W 1494 nt19.27■□□□□ 0.68
SSM4P40318 WWM1YFL010C 636 nt19.15■□□□□ 0.66
SSM4P40318 RPP2BYDR382W 333 nt19.06■□□□□ 0.64
SSM4P40318 MNP1YGL068W 585 nt19.05■□□□□ 0.64
SSM4P40318 NAB2YGL122C 1578 nt19■□□□□ 0.63
SSM4P40318 FIS1YIL065C 468 nt18.99■□□□□ 0.63
SSM4P40318 YOR139CYOR139C 393 nt18.99■□□□□ 0.63
SSM4P40318 SSA3YBL075C 1950 nt18.95■□□□□ 0.62
SSM4P40318 HOM6YJR139C 1080 nt18.93■□□□□ 0.62
SSM4P40318 FPR4YLR449W 1179 nt18.89■□□□□ 0.61
SSM4P40318 YGR021WYGR021W 873 nt18.82■□□□□ 0.6
SSM4P40318 DAL1YIR027C 1383 nt18.82■□□□□ 0.6
SSM4P40318 BDH2YAL061W 1254 nt18.79■□□□□ 0.6
SSM4P40318 PHO4YFR034C 939 nt18.74■□□□□ 0.59
SSM4P40318 YBL100CYBL100C 315 nt18.72■□□□□ 0.59
SSM4P40318 INM2YDR287W 879 nt18.69■□□□□ 0.58
SSM4P40318 YFL021C-AYFL021C-A 855 nt18.64■□□□□ 0.57
SSM4P40318 RKM5YLR137W 1104 nt18.64■□□□□ 0.57
SSM4P40318 NPL3YDR432W 1245 nt18.63■□□□□ 0.57
SSM4P40318 FUN26YAL022C 1554 nt18.49■□□□□ 0.55
SSM4P40318 YOL037CYOL037C 354 nt18.46■□□□□ 0.55
SSM4P40318 LSM3YLR438C-A 270 nt18.44■□□□□ 0.54
SSM4P40318 TRM9YML014W 840 nt18.35■□□□□ 0.53
SSM4P40318 YPS1YLR120C 1710 nt18.29■□□□□ 0.52
SSM4P40318 SPT5YML010W 3192 nt18.24■□□□□ 0.51
SSM4P40318 CCT6YDR188W 1641 nt18.22■□□□□ 0.51
SSM4P40318 YDR095CYDR095C 411 nt18.2■□□□□ 0.5
SSM4P40318 tM(CAU)CtM(CAU)C 72 nt18.14■□□□□ 0.49
SSM4P40318 IMT4tM(CAU)E 72 nt18.14■□□□□ 0.49
SSM4P40318 IMT3tM(CAU)J3 72 nt18.14■□□□□ 0.49
SSM4P40318 IMT1tM(CAU)O1 72 nt18.14■□□□□ 0.49
SSM4P40318 IMT2tM(CAU)P 72 nt18.14■□□□□ 0.49
SSM4P40318 ALF1YNL148C 765 nt18.12■□□□□ 0.49
SSM4P40318 YHR165W-AYHR165W-A 312 nt18.09■□□□□ 0.49
SSM4P40318 YLR281CYLR281C 468 nt18.09■□□□□ 0.49
SSM4P40318 WHI5YOR083W 888 nt18.06■□□□□ 0.48
SSM4P40318 PUS2YGL063W 1113 nt18■□□□□ 0.47
SSM4P40318 MEP2YNL142W 1500 nt18■□□□□ 0.47
SSM4P40318 SUF2tP(AGG)C 72 nt17.93■□□□□ 0.46
SSM4P40318 SUF10tP(AGG)N 72 nt17.93■□□□□ 0.46
Retrieved 100 of 7,029 protein–RNA pairs in 14.6 ms