RNA–Protein interactions for RNA: YMR038C

CCS1, Transcript of Copper chaperone for superoxide dismutase Sod1p, yeastyeast

Gene CCS1, Length 750 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CCS1YMR038C MTC1P47018 478 aaKnown RBP13.86□□□□□ -0.19
CCS1YMR038C DRS1P32892 752 aaKnown RBP13.74□□□□□ -0.21
CCS1YMR038C BFR2Q06631 534 aaKnown RBP11.81□□□□□ -0.52
CCS1YMR038C DIP2Q12220 943 aaPredicted RBP11.75□□□□□ -0.53
CCS1YMR038C AVT3P36062 692 aa11.6□□□□□ -0.55
CCS1YMR038C FAP1P53971 965 aa11.49□□□□□ -0.57
CCS1YMR038C ISW2Q08773 1120 aa11.26□□□□□ -0.61
CCS1YMR038C PRI1P10363 409 aa11.23□□□□□ -0.61
CCS1YMR038C RPG1P38249 964 aaKnown RBP11.15□□□□□ -0.62
CCS1YMR038C RSE1Q04693 1361 aaKnown RBP11.12□□□□□ -0.63
CCS1YMR038C TFA1P36100 482 aa11.02□□□□□ -0.65
CCS1YMR038C AAD16Q02895 342 aa11.02□□□□□ -0.65
CCS1YMR038C PRY3P47033 881 aa10.78□□□□□ -0.68
CCS1YMR038C RPL17AP05740 184 aaKnown RBP10.73□□□□□ -0.69
CCS1YMR038C RPL17BP46990 184 aaKnown RBP10.73□□□□□ -0.69
CCS1YMR038C TSR3Q12094 313 aaKnown RBP10.65□□□□□ -0.7
CCS1YMR038C REB1P21538 810 aa10.58□□□□□ -0.72
CCS1YMR038C SPT21P35209 758 aa10.37□□□□□ -0.75
CCS1YMR038C YCK3P39962 524 aa10.3□□□□□ -0.76
CCS1YMR038C INO80P53115 1489 aa10.27□□□□□ -0.77
CCS1YMR038C MRPL32P25348 183 aa10.19□□□□□ -0.78
CCS1YMR038C RIM101P33400 625 aa10.18□□□□□ -0.78
CCS1YMR038C HAA1Q12753 694 aaKnown RBP10.15□□□□□ -0.78
CCS1YMR038C MON2P48563 1636 aaPredicted RBP10.14□□□□□ -0.79
CCS1YMR038C YKR023WP36119 530 aaKnown RBP10.07□□□□□ -0.8
CCS1YMR038C CDC27P38042 758 aa9.89□□□□□ -0.83
CCS1YMR038C OXP1P28273 1286 aa9.87□□□□□ -0.83
CCS1YMR038C TFC8Q12308 588 aa9.85□□□□□ -0.83
CCS1YMR038C HOP09932 586 aa9.84□□□□□ -0.83
CCS1YMR038C DCD1P06773 312 aa9.79□□□□□ -0.84
CCS1YMR038C DNA2P38859 1522 aa9.72□□□□□ -0.85
CCS1YMR038C PTP3P40048 928 aa9.7□□□□□ -0.86
CCS1YMR038C YAH1Q12184 172 aaKnown RBP9.66□□□□□ -0.86
CCS1YMR038C YIL055CP40523 627 aaKnown RBP9.65□□□□□ -0.86
CCS1YMR038C SSP1P38871 571 aa9.63□□□□□ -0.87
CCS1YMR038C YLR271WQ06152 274 aa9.56□□□□□ -0.88
CCS1YMR038C BCH2P36122 765 aa9.55□□□□□ -0.88
CCS1YMR038C KOG1P38873 1557 aa9.54□□□□□ -0.88
CCS1YMR038C YGL015CP33199 130 aa9.54□□□□□ -0.88
CCS1YMR038C RSM7P47150 247 aa9.54□□□□□ -0.88
CCS1YMR038C SWR1Q05471 1514 aa9.53□□□□□ -0.88
CCS1YMR038C MAP2P38174 421 aaKnown RBP9.47□□□□□ -0.89
CCS1YMR038C UBP10P53874 792 aaPredicted RBP9.46□□□□□ -0.9
CCS1YMR038C ARP8Q12386 881 aaKnown RBP RIP-Chip data9.45□□□□□ -0.9not detected
CCS1YMR038C SCY1P53009 804 aa9.41□□□□□ -0.9
CCS1YMR038C AI2P03876 854 aa9.4□□□□□ -0.9
CCS1YMR038C EPS1P40557 701 aa9.37□□□□□ -0.91
CCS1YMR038C TY1B-DR4Q07793 1604 aa9.34□□□□□ -0.91
CCS1YMR038C PSD2P53037 1138 aaKnown RBP9.33□□□□□ -0.92
CCS1YMR038C TCB3Q03640 1545 aaKnown RBP9.31□□□□□ -0.92
CCS1YMR038C BDF1P35817 686 aa9.31□□□□□ -0.92
CCS1YMR038C BBC1P47068 1157 aa9.31□□□□□ -0.92
CCS1YMR038C MGA2P40578 1113 aa9.29□□□□□ -0.92
CCS1YMR038C CST9Q06032 482 aa9.27□□□□□ -0.93
CCS1YMR038C SLX5P32828 619 aaKnown RBP9.23□□□□□ -0.93
CCS1YMR038C SGS1P35187 1447 aa9.14□□□□□ -0.95
CCS1YMR038C MRM1P25270 412 aa9.1□□□□□ -0.95
CCS1YMR038C SPA2P23201 1466 aaKnown RBP9.07□□□□□ -0.96
CCS1YMR038C RQC2Q12532 1038 aaKnown RBP9.05□□□□□ -0.96
CCS1YMR038C TIF4632P39936 914 aaKnown RBP9.03□□□□□ -0.96
CCS1YMR038C DMA1P38823 416 aa9.02□□□□□ -0.97
CCS1YMR038C TGL3P40308 642 aa9□□□□□ -0.97
CCS1YMR038C HSL1P34244 1518 aa8.99□□□□□ -0.97
CCS1YMR038C SPT6P23615 1451 aaKnown RBP8.97□□□□□ -0.97
CCS1YMR038C RCR1P38212 213 aa8.97□□□□□ -0.97
CCS1YMR038C RTG3P38165 486 aa8.95□□□□□ -0.98
CCS1YMR038C ECM5Q03214 1411 aa8.95□□□□□ -0.98
CCS1YMR038C RAM2P29703 316 aa8.91□□□□□ -0.98
CCS1YMR038C VPS29P38759 282 aa8.91□□□□□ -0.98
CCS1YMR038C NSR1P27476 414 aaKnown RBP RIP-Chip data8.87□□□□□ -0.99 RIP-Chip
CCS1YMR038C YMR1P47147 688 aaKnown RBP RIP-Chip data8.81□□□□□ -1not detected
CCS1YMR038C YAP5P40574 245 aa8.8□□□□□ -1
CCS1YMR038C YOR238WQ08634 303 aa8.8□□□□□ -1
CCS1YMR038C STS1P38637 319 aa8.79□□□□□ -1
CCS1YMR038C HIR3P47171 1648 aa8.79□□□□□ -1
CCS1YMR038C BUD4P47136 1447 aa8.79□□□□□ -1
CCS1YMR038C MAK11P20484 414 aaKnown RBP8.76□□□□□ -1.01
CCS1YMR038C DBP1P24784 617 aaKnown RBP8.76□□□□□ -1.01
CCS1YMR038C THO2P53552 1597 aaKnown RBP8.76□□□□□ -1.01
CCS1YMR038C MST1P07236 462 aa8.75□□□□□ -1.01
CCS1YMR038C YFR006WP43590 535 aa8.75□□□□□ -1.01
CCS1YMR038C PIB1Q06651 286 aa8.73□□□□□ -1.01
CCS1YMR038C MDS3P53094 1487 aa8.7□□□□□ -1.02
CCS1YMR038C REV3P14284 1504 aa8.65□□□□□ -1.02
CCS1YMR038C COQ8P27697 501 aa8.64□□□□□ -1.03
CCS1YMR038C SET1P38827 1080 aaKnown RBP8.64□□□□□ -1.03
CCS1YMR038C EDS1P38073 919 aa8.62□□□□□ -1.03
CCS1YMR038C XRN1P22147 1528 aaKnown RBP8.62□□□□□ -1.03
CCS1YMR038C VMA1P17255 1071 aaKnown RBP8.61□□□□□ -1.03
CCS1YMR038C MIF2P35201 549 aa8.6□□□□□ -1.03
CCS1YMR038C SAS10Q12136 610 aaPredicted RBP8.6□□□□□ -1.03
CCS1YMR038C BPT1P14772 1559 aa8.58□□□□□ -1.04
CCS1YMR038C PEP1P32319 1579 aa8.56□□□□□ -1.04
CCS1YMR038C GTT3P39996 337 aa8.55□□□□□ -1.04
CCS1YMR038C NOP53Q12080 455 aaKnown RBP8.54□□□□□ -1.04
CCS1YMR038C PTC3P34221 468 aaKnown RBP8.53□□□□□ -1.04
CCS1YMR038C YPR148CQ06523 435 aa8.53□□□□□ -1.04
CCS1YMR038C SAM3Q08986 587 aa8.53□□□□□ -1.04
CCS1YMR038C ATG2P53855 1592 aa8.51□□□□□ -1.05
CCS1YMR038C IFH1P39520 1085 aa8.47□□□□□ -1.05
Retrieved 100 of 5,963 RNA–protein pairs in 39.3 ms