RNA–Protein interactions for RNA: YML046W

PRP39, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP39, Length 1,890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP39YML046W MTC1P47018 478 aaKnown RBP10.72□□□□□ -0.69
PRP39YML046W FAP1P53971 965 aa10.59□□□□□ -0.71
PRP39YML046W PRY3P47033 881 aa9.97□□□□□ -0.81
PRP39YML046W AAD16Q02895 342 aa9.54□□□□□ -0.88
PRP39YML046W PRI1P10363 409 aa9.49□□□□□ -0.89
PRP39YML046W YCK3P39962 524 aa9.32□□□□□ -0.92
PRP39YML046W HAA1Q12753 694 aaKnown RBP9.31□□□□□ -0.92
PRP39YML046W DRS1P32892 752 aaKnown RBP9.22□□□□□ -0.93
PRP39YML046W ISW2Q08773 1120 aa9.09□□□□□ -0.95
PRP39YML046W RPG1P38249 964 aaKnown RBP9□□□□□ -0.97
PRP39YML046W TSR3Q12094 313 aaKnown RBP8.92□□□□□ -0.98
PRP39YML046W MRPL32P25348 183 aa8.6□□□□□ -1.03
PRP39YML046W YGL015CP33199 130 aa8.47□□□□□ -1.05
PRP39YML046W DIP2Q12220 943 aaPredicted RBP8.36□□□□□ -1.07
PRP39YML046W RSE1Q04693 1361 aaKnown RBP8.34□□□□□ -1.08
PRP39YML046W REB1P21538 810 aa8.17□□□□□ -1.1
PRP39YML046W RPL17AP05740 184 aaKnown RBP8.11□□□□□ -1.11
PRP39YML046W RPL17BP46990 184 aaKnown RBP8.11□□□□□ -1.11
PRP39YML046W BUD31P25337 157 aaPredicted RBP8.11□□□□□ -1.11
PRP39YML046W CDC27P38042 758 aa7.99□□□□□ -1.13
PRP39YML046W UBP10P53874 792 aaPredicted RBP7.91□□□□□ -1.14
PRP39YML046W MAP2P38174 421 aaKnown RBP7.85□□□□□ -1.15
PRP39YML046W AVT3P36062 692 aa7.82□□□□□ -1.16
PRP39YML046W YKR023WP36119 530 aaKnown RBP7.77□□□□□ -1.17
PRP39YML046W SPT21P35209 758 aa7.68□□□□□ -1.18
PRP39YML046W SIS1P25294 352 aaKnown RBP7.66□□□□□ -1.18
PRP39YML046W HOP09932 586 aa7.62□□□□□ -1.19
PRP39YML046W TFC8Q12308 588 aa7.62□□□□□ -1.19
PRP39YML046W DCD1P06773 312 aa7.61□□□□□ -1.19
PRP39YML046W TIF4632P39936 914 aaKnown RBP7.61□□□□□ -1.19
PRP39YML046W UBP9P39967 754 aa7.6□□□□□ -1.19
PRP39YML046W SCY1P53009 804 aa7.56□□□□□ -1.2
PRP39YML046W TGL3P40308 642 aa7.55□□□□□ -1.2
PRP39YML046W SLX5P32828 619 aaKnown RBP7.52□□□□□ -1.21
PRP39YML046W BCH2P36122 765 aa7.34□□□□□ -1.23
PRP39YML046W BFR2Q06631 534 aaKnown RBP7.3□□□□□ -1.24
PRP39YML046W RIM101P33400 625 aa7.23□□□□□ -1.25
PRP39YML046W YBL029C-AQ3E756 94 aa7.16□□□□□ -1.26
PRP39YML046W MST1P07236 462 aa7.13□□□□□ -1.27
PRP39YML046W EPS1P40557 701 aa7.11□□□□□ -1.27
PRP39YML046W BDF1P35817 686 aa7.09□□□□□ -1.27
PRP39YML046W YOR238WQ08634 303 aa7.09□□□□□ -1.27
PRP39YML046W VNX1P42839 908 aa7.04□□□□□ -1.28
PRP39YML046W NSR1P27476 414 aaKnown RBP RIP-Chip data7□□□□□ -1.29not detected
PRP39YML046W SPP1Q03012 353 aa7□□□□□ -1.29
PRP39YML046W OXP1P28273 1286 aa6.95□□□□□ -1.3
PRP39YML046W WSC3Q12215 556 aa6.94□□□□□ -1.3
PRP39YML046W PTP3P40048 928 aa6.94□□□□□ -1.3
PRP39YML046W YAP5P40574 245 aa6.94□□□□□ -1.3
PRP39YML046W YJL171CP46992 396 aa6.93□□□□□ -1.3
PRP39YML046W AIR2Q12476 344 aaKnown RBP6.91□□□□□ -1.3
PRP39YML046W YIL055CP40523 627 aaKnown RBP6.9□□□□□ -1.3
PRP39YML046W FKH1P40466 484 aa6.89□□□□□ -1.31
PRP39YML046W BBC1P47068 1157 aa6.87□□□□□ -1.31
PRP39YML046W TIF11P38912 153 aaKnown RBP6.87□□□□□ -1.31
PRP39YML046W GTT3P39996 337 aa6.83□□□□□ -1.32
PRP39YML046W AI2P03876 854 aa6.79□□□□□ -1.32
PRP39YML046W RSM7P47150 247 aa6.78□□□□□ -1.32
PRP39YML046W BMT6Q12291 365 aa6.77□□□□□ -1.33
PRP39YML046W LDB19Q12502 818 aa6.77□□□□□ -1.33
PRP39YML046W ULI1P43604 169 aa6.74□□□□□ -1.33
PRP39YML046W IOC2Q12072 812 aa6.7□□□□□ -1.34
PRP39YML046W YAH1Q12184 172 aaKnown RBP6.67□□□□□ -1.34
PRP39YML046W PIB1Q06651 286 aa6.64□□□□□ -1.35
PRP39YML046W MSB4Q12317 492 aa6.62□□□□□ -1.35
PRP39YML046W EAP1P36041 632 aaKnown RBP6.61□□□□□ -1.35
PRP39YML046W RTG1P32607 177 aa6.58□□□□□ -1.36
PRP39YML046W NCR1Q12200 1170 aa6.54□□□□□ -1.36
PRP39YML046W YOL036WQ08206 761 aa6.53□□□□□ -1.36
PRP39YML046W TRP5P00931 707 aaKnown RBP6.52□□□□□ -1.37
PRP39YML046W SET4P42948 560 aa6.52□□□□□ -1.37
PRP39YML046W PSD2P53037 1138 aaKnown RBP6.51□□□□□ -1.37
PRP39YML046W MRM1P25270 412 aa6.5□□□□□ -1.37
PRP39YML046W YNL035CP53962 389 aaKnown RBP6.5□□□□□ -1.37
PRP39YML046W YLR271WQ06152 274 aa6.5□□□□□ -1.37
PRP39YML046W SEC61P32915 480 aa6.49□□□□□ -1.37
PRP39YML046W TFG1P41895 735 aaPredicted RBP6.45□□□□□ -1.38
PRP39YML046W YMR1P47147 688 aaKnown RBP RIP-Chip data6.42□□□□□ -1.38not detected
PRP39YML046W BCK2P33306 851 aa6.41□□□□□ -1.38
PRP39YML046W DBP1P24784 617 aaKnown RBP6.4□□□□□ -1.39
PRP39YML046W VMA1P17255 1071 aaKnown RBP6.39□□□□□ -1.39
PRP39YML046W SAP30P38429 201 aa6.39□□□□□ -1.39
PRP39YML046W YFR006WP43590 535 aa6.36□□□□□ -1.39
PRP39YML046W SAM3Q08986 587 aa6.36□□□□□ -1.39
PRP39YML046W CHL1P22516 861 aaPredicted RBP6.35□□□□□ -1.39
PRP39YML046W VPS29P38759 282 aa6.34□□□□□ -1.39
PRP39YML046W JIP4Q03361 876 aa6.33□□□□□ -1.4
PRP39YML046W YDL129WQ07555 291 aa6.33□□□□□ -1.4
PRP39YML046W DAN4P47179 1161 aa6.32□□□□□ -1.4
PRP39YML046W STS1P38637 319 aa6.32□□□□□ -1.4
PRP39YML046W RTG3P38165 486 aa6.31□□□□□ -1.4
PRP39YML046W PRE3P38624 215 aa6.31□□□□□ -1.4
PRP39YML046W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.31□□□□□ -1.4 RIP-Chip
PRP39YML046W ABP1P15891 592 aaKnown RBP6.3□□□□□ -1.4
PRP39YML046W TFA1P36100 482 aa6.26□□□□□ -1.41
PRP39YML046W GYP5Q12344 894 aa6.26□□□□□ -1.41
PRP39YML046W HTA1P04911 132 aaKnown RBP6.25□□□□□ -1.41
PRP39YML046W HTA2P04912 132 aa6.25□□□□□ -1.41
PRP39YML046W SSP1P38871 571 aa6.23□□□□□ -1.41
PRP39YML046W CST9Q06032 482 aa6.23□□□□□ -1.41
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms