RNA–Protein interactions for RNA: YHR076W

PTC7, Transcript of Type 2C serine/threonine protein phosphatase (PP2C), yeast

Gene PTC7, Length 1,032 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTC7	YHR076W	MTC1	P47018	478 aa	Known RBP	17.49	■□□□□ 0.39
PTC7	YHR076W	DRS1	P32892	752 aa	Known RBP	17.47	■□□□□ 0.39
PTC7	YHR076W	BFR2	Q06631	534 aa	Known RBP	15.06	■□□□□ 0
PTC7	YHR076W	DIP2	Q12220	943 aa	Predicted RBP	14.91	□□□□□ -0.02
PTC7	YHR076W	FAP1	P53971	965 aa		14.78	□□□□□ -0.04
PTC7	YHR076W	AVT3	P36062	692 aa		14.57	□□□□□ -0.08
PTC7	YHR076W	ISW2	Q08773	1120 aa		14.39	□□□□□ -0.11
PTC7	YHR076W	RSE1	Q04693	1361 aa	Known RBP	14.16	□□□□□ -0.14
PTC7	YHR076W	PRI1	P10363	409 aa		14.12	□□□□□ -0.15
PTC7	YHR076W	RPG1	P38249	964 aa	Known RBP	14.12	□□□□□ -0.15
PTC7	YHR076W	AAD16	Q02895	342 aa		13.97	□□□□□ -0.17
PTC7	YHR076W	TFA1	P36100	482 aa		13.96	□□□□□ -0.17
PTC7	YHR076W	PRY3	P47033	881 aa		13.85	□□□□□ -0.19
PTC7	YHR076W	RPL17A	P05740	184 aa	Known RBP	13.6	□□□□□ -0.23
PTC7	YHR076W	RPL17B	P46990	184 aa	Known RBP	13.6	□□□□□ -0.23
PTC7	YHR076W	REB1	P21538	810 aa		13.55	□□□□□ -0.24
PTC7	YHR076W	TSR3	Q12094	313 aa	Known RBP	13.43	□□□□□ -0.26
PTC7	YHR076W	MRPL32	P25348	183 aa		13.02	□□□□□ -0.33
PTC7	YHR076W	HAA1	Q12753	694 aa	Known RBP	13	□□□□□ -0.33
PTC7	YHR076W	SPT21	P35209	758 aa		12.95	□□□□□ -0.34
PTC7	YHR076W	YCK3	P39962	524 aa		12.95	□□□□□ -0.34
PTC7	YHR076W	RIM101	P33400	625 aa		12.79	□□□□□ -0.36
PTC7	YHR076W	YKR023W	P36119	530 aa	Known RBP	12.59	□□□□□ -0.39
PTC7	YHR076W	YIL055C	P40523	627 aa	Known RBP	12.41	□□□□□ -0.42
PTC7	YHR076W	HO	P09932	586 aa		12.4	□□□□□ -0.42
PTC7	YHR076W	TFC8	Q12308	588 aa		12.38	□□□□□ -0.43
PTC7	YHR076W	SGS1	P35187	1447 aa		12.37	□□□□□ -0.43
PTC7	YHR076W	CDC27	P38042	758 aa		12.36	□□□□□ -0.43
PTC7	YHR076W	PTP3	P40048	928 aa		12.35	□□□□□ -0.43
PTC7	YHR076W	OXP1	P28273	1286 aa		12.34	□□□□□ -0.43
PTC7	YHR076W	INO80	P53115	1489 aa		12.31	□□□□□ -0.44
PTC7	YHR076W	YAH1	Q12184	172 aa	Known RBP	12.29	□□□□□ -0.44
PTC7	YHR076W	DCD1	P06773	312 aa		12.27	□□□□□ -0.45
PTC7	YHR076W	SSP1	P38871	571 aa		12.23	□□□□□ -0.45
PTC7	YHR076W	TCB3	Q03640	1545 aa	Known RBP	12.19	□□□□□ -0.46
PTC7	YHR076W	YGL015C	P33199	130 aa		12.18	□□□□□ -0.46
PTC7	YHR076W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	12.17	□□□□□ -0.46	not detected
PTC7	YHR076W	MON2	P48563	1636 aa	Predicted RBP	12.16	□□□□□ -0.46
PTC7	YHR076W	RSM7	P47150	247 aa		12.11	□□□□□ -0.47
PTC7	YHR076W	TY1B-DR4	Q07793	1604 aa		12.04	□□□□□ -0.48
PTC7	YHR076W	YLR271W	Q06152	274 aa		12.02	□□□□□ -0.49
PTC7	YHR076W	BCH2	P36122	765 aa		12.01	□□□□□ -0.49
PTC7	YHR076W	UBP10	P53874	792 aa	Predicted RBP	12	□□□□□ -0.49
PTC7	YHR076W	RQC2	Q12532	1038 aa	Known RBP	11.96	□□□□□ -0.49
PTC7	YHR076W	BBC1	P47068	1157 aa		11.95	□□□□□ -0.5
PTC7	YHR076W	MAP2	P38174	421 aa	Known RBP	11.92	□□□□□ -0.5
PTC7	YHR076W	SCY1	P53009	804 aa		11.92	□□□□□ -0.5
PTC7	YHR076W	AI2	P03876	854 aa		11.9	□□□□□ -0.5
PTC7	YHR076W	EPS1	P40557	701 aa		11.83	□□□□□ -0.52
PTC7	YHR076W	MGA2	P40578	1113 aa		11.83	□□□□□ -0.52
PTC7	YHR076W	SWR1	Q05471	1514 aa		11.81	□□□□□ -0.52
PTC7	YHR076W	SPA2	P23201	1466 aa	Known RBP	11.81	□□□□□ -0.52
PTC7	YHR076W	HSL1	P34244	1518 aa		11.76	□□□□□ -0.53
PTC7	YHR076W	SLX5	P32828	619 aa	Known RBP	11.75	□□□□□ -0.53
PTC7	YHR076W	BDF1	P35817	686 aa		11.73	□□□□□ -0.53
PTC7	YHR076W	SSN2	P38931	1420 aa		11.73	□□□□□ -0.53
PTC7	YHR076W	SPT6	P23615	1451 aa	Known RBP	11.72	□□□□□ -0.53
PTC7	YHR076W	PSD2	P53037	1138 aa	Known RBP	11.71	□□□□□ -0.53
PTC7	YHR076W	CST9	Q06032	482 aa		11.63	□□□□□ -0.55
PTC7	YHR076W	TIF4632	P39936	914 aa	Known RBP	11.62	□□□□□ -0.55
PTC7	YHR076W	KOG1	P38873	1557 aa		11.54	□□□□□ -0.56
PTC7	YHR076W	MRM1	P25270	412 aa		11.53	□□□□□ -0.56
PTC7	YHR076W	HIR3	P47171	1648 aa		11.53	□□□□□ -0.56
PTC7	YHR076W	DNA2	P38859	1522 aa		11.51	□□□□□ -0.57
PTC7	YHR076W	DMA1	P38823	416 aa		11.47	□□□□□ -0.57
PTC7	YHR076W	TGL3	P40308	642 aa		11.44	□□□□□ -0.58
PTC7	YHR076W	RTG3	P38165	486 aa		11.41	□□□□□ -0.58
PTC7	YHR076W	XRN1	P22147	1528 aa	Known RBP	11.4	□□□□□ -0.58
PTC7	YHR076W	THO2	P53552	1597 aa	Known RBP	11.28	□□□□□ -0.6
PTC7	YHR076W	REV3	P14284	1504 aa		11.27	□□□□□ -0.61
PTC7	YHR076W	YAP5	P40574	245 aa		11.23	□□□□□ -0.61
PTC7	YHR076W	SIN3	P22579	1536 aa		11.23	□□□□□ -0.61
PTC7	YHR076W	RCR1	P38212	213 aa		11.22	□□□□□ -0.61
PTC7	YHR076W	BUD4	P47136	1447 aa		11.22	□□□□□ -0.61
PTC7	YHR076W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.21	□□□□□ -0.61	not detected
PTC7	YHR076W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	11.21	□□□□□ -0.61	not detected
PTC7	YHR076W	RAM2	P29703	316 aa		11.18	□□□□□ -0.62
PTC7	YHR076W	VPS29	P38759	282 aa		11.17	□□□□□ -0.62
PTC7	YHR076W	YOR238W	Q08634	303 aa		11.16	□□□□□ -0.62
PTC7	YHR076W	ECM5	Q03214	1411 aa		11.14	□□□□□ -0.63
PTC7	YHR076W	SSK2	P53599	1579 aa		11.13	□□□□□ -0.63
PTC7	YHR076W	MAK11	P20484	414 aa	Known RBP	11.12	□□□□□ -0.63
PTC7	YHR076W	DBP1	P24784	617 aa	Known RBP	11.1	□□□□□ -0.63
PTC7	YHR076W	ATG2	P53855	1592 aa		11.07	□□□□□ -0.64
PTC7	YHR076W	YFR006W	P43590	535 aa		11.06	□□□□□ -0.64
PTC7	YHR076W	PIB1	Q06651	286 aa		11.04	□□□□□ -0.64
PTC7	YHR076W	ESP1	Q03018	1630 aa		11.04	□□□□□ -0.64
PTC7	YHR076W	GTT3	P39996	337 aa		11.03	□□□□□ -0.64
PTC7	YHR076W	MDS3	P53094	1487 aa		11.03	□□□□□ -0.64
PTC7	YHR076W	MYO2	P19524	1574 aa	Known RBP	11.03	□□□□□ -0.64
PTC7	YHR076W	TAF2	P23255	1407 aa		11.02	□□□□□ -0.64
PTC7	YHR076W	STS1	P38637	319 aa		11.02	□□□□□ -0.65
PTC7	YHR076W	SET1	P38827	1080 aa	Known RBP	11.01	□□□□□ -0.65
PTC7	YHR076W	PEP1	P32319	1579 aa		10.99	□□□□□ -0.65
PTC7	YHR076W	MST1	P07236	462 aa		10.99	□□□□□ -0.65
PTC7	YHR076W	MIF2	P35201	549 aa		10.99	□□□□□ -0.65
PTC7	YHR076W	BUD31	P25337	157 aa	Predicted RBP	10.97	□□□□□ -0.65
PTC7	YHR076W	COQ8	P27697	501 aa		10.95	□□□□□ -0.66
PTC7	YHR076W	SKI3	P17883	1432 aa	Known RBP	10.93	□□□□□ -0.66
PTC7	YHR076W	IFH1	P39520	1085 aa		10.93	□□□□□ -0.66

Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms