RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeastyeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PTA1YAL043C MTC1P47018 478 aaKnown RBP8.1□□□□□ -1.11
PTA1YAL043C DRS1P32892 752 aaKnown RBP7.73□□□□□ -1.17
PTA1YAL043C FAP1P53971 965 aa7.16□□□□□ -1.26
PTA1YAL043C PRI1P10363 409 aa6.73□□□□□ -1.33
PTA1YAL043C SGS1P35187 1447 aa6.72□□□□□ -1.33
PTA1YAL043C DIP2Q12220 943 aaPredicted RBP6.72□□□□□ -1.33
PTA1YAL043C PRY3P47033 881 aa6.71□□□□□ -1.34
PTA1YAL043C AAD16Q02895 342 aa6.7□□□□□ -1.34
PTA1YAL043C ISW2Q08773 1120 aa6.7□□□□□ -1.34
PTA1YAL043C RPG1P38249 964 aaKnown RBP6.61□□□□□ -1.35
PTA1YAL043C BFR2Q06631 534 aaKnown RBP6.51□□□□□ -1.37
PTA1YAL043C AVT3P36062 692 aa6.49□□□□□ -1.37
PTA1YAL043C SSN2P38931 1420 aa6.47□□□□□ -1.37
PTA1YAL043C RSE1Q04693 1361 aaKnown RBP6.46□□□□□ -1.38
PTA1YAL043C TSR3Q12094 313 aaKnown RBP6.39□□□□□ -1.39
PTA1YAL043C SPA2P23201 1466 aaKnown RBP6.39□□□□□ -1.39
PTA1YAL043C INO80P53115 1489 aa6.32□□□□□ -1.4
PTA1YAL043C HAA1Q12753 694 aaKnown RBP6.3□□□□□ -1.4
PTA1YAL043C YCK3P39962 524 aa6.26□□□□□ -1.41
PTA1YAL043C RPL17AP05740 184 aaKnown RBP6.25□□□□□ -1.41
PTA1YAL043C RPL17BP46990 184 aaKnown RBP6.25□□□□□ -1.41
PTA1YAL043C TCB3Q03640 1545 aaKnown RBP6.24□□□□□ -1.41
PTA1YAL043C REB1P21538 810 aa6.22□□□□□ -1.41
PTA1YAL043C TAF2P23255 1407 aa6.18□□□□□ -1.42
PTA1YAL043C SPT6P23615 1451 aaKnown RBP6.17□□□□□ -1.42
PTA1YAL043C MRPL32P25348 183 aa6.16□□□□□ -1.42
PTA1YAL043C HSL1P34244 1518 aa6.16□□□□□ -1.42
PTA1YAL043C RQC2Q12532 1038 aaKnown RBP6.15□□□□□ -1.42
PTA1YAL043C XRN1P22147 1528 aaKnown RBP6.14□□□□□ -1.43
PTA1YAL043C TY1B-DR4Q07793 1604 aa6.13□□□□□ -1.43
PTA1YAL043C HIR3P47171 1648 aa6.07□□□□□ -1.44
PTA1YAL043C SAS10Q12136 610 aaPredicted RBP6.06□□□□□ -1.44
PTA1YAL043C SWR1Q05471 1514 aa6.03□□□□□ -1.44
PTA1YAL043C MON2P48563 1636 aaPredicted RBP6□□□□□ -1.45
PTA1YAL043C REV3P14284 1504 aa5.98□□□□□ -1.45
PTA1YAL043C SKI3P17883 1432 aaKnown RBP5.95□□□□□ -1.46
PTA1YAL043C SPT21P35209 758 aa5.94□□□□□ -1.46
PTA1YAL043C MMS22Q06164 1454 aa5.88□□□□□ -1.47
PTA1YAL043C STU1P38198 1513 aa5.87□□□□□ -1.47
PTA1YAL043C DNA2P38859 1522 aa5.87□□□□□ -1.47
PTA1YAL043C ECM5Q03214 1411 aa5.86□□□□□ -1.47
PTA1YAL043C THO2P53552 1597 aaKnown RBP5.86□□□□□ -1.47
PTA1YAL043C YGL015CP33199 130 aa5.86□□□□□ -1.47
PTA1YAL043C SSK2P53599 1579 aa5.85□□□□□ -1.47
PTA1YAL043C YKR023WP36119 530 aaKnown RBP5.85□□□□□ -1.47
PTA1YAL043C BPT1P14772 1559 aa5.84□□□□□ -1.47
PTA1YAL043C CDC27P38042 758 aa5.84□□□□□ -1.47
PTA1YAL043C IFH1P39520 1085 aa5.84□□□□□ -1.47
PTA1YAL043C ESP1Q03018 1630 aa5.81□□□□□ -1.48
PTA1YAL043C BUD4P47136 1447 aa5.81□□□□□ -1.48
PTA1YAL043C TFA1P36100 482 aa5.8□□□□□ -1.48
PTA1YAL043C SIN3P22579 1536 aa5.8□□□□□ -1.48
PTA1YAL043C RIM101P33400 625 aa5.79□□□□□ -1.48
PTA1YAL043C MYO2P19524 1574 aaKnown RBP5.77□□□□□ -1.49
PTA1YAL043C HOP09932 586 aa5.76□□□□□ -1.49
PTA1YAL043C POL1P13382 1468 aa5.75□□□□□ -1.49
PTA1YAL043C SCC2Q04002 1493 aa5.75□□□□□ -1.49
PTA1YAL043C YTA7P40340 1379 aa5.74□□□□□ -1.49
PTA1YAL043C TFC8Q12308 588 aa5.74□□□□□ -1.49
PTA1YAL043C KOG1P38873 1557 aa5.74□□□□□ -1.49
PTA1YAL043C ATG2P53855 1592 aa5.74□□□□□ -1.49
PTA1YAL043C TRM732Q03496 1420 aa5.74□□□□□ -1.49
PTA1YAL043C STH1P32597 1359 aa5.73□□□□□ -1.49
PTA1YAL043C RKR1Q04781 1562 aa5.72□□□□□ -1.49
PTA1YAL043C DCD1P06773 312 aa5.72□□□□□ -1.49
PTA1YAL043C CHD1P32657 1468 aa5.71□□□□□ -1.5
PTA1YAL043C NSR1P27476 414 aaKnown RBP RIP-Chip data5.71□□□□□ -1.5not detected
PTA1YAL043C UFD4P33202 1483 aa5.7□□□□□ -1.5
PTA1YAL043C YPK9Q12697 1472 aa5.7□□□□□ -1.5
PTA1YAL043C SSM4P40318 1319 aa5.7□□□□□ -1.5
PTA1YAL043C TAF7Q05021 590 aa5.7□□□□□ -1.5
PTA1YAL043C MDS3P53094 1487 aa5.69□□□□□ -1.5
PTA1YAL043C RTT106P40161 455 aa5.67□□□□□ -1.5
PTA1YAL043C IKI3Q06706 1349 aaKnown RBP5.67□□□□□ -1.5
PTA1YAL043C YOR1P53049 1477 aa5.67□□□□□ -1.5
PTA1YAL043C UBP10P53874 792 aaPredicted RBP5.66□□□□□ -1.5
PTA1YAL043C MAP2P38174 421 aaKnown RBP5.65□□□□□ -1.51
PTA1YAL043C LEU3P08638 886 aa5.64□□□□□ -1.51
PTA1YAL043C ORC1P54784 914 aaPredicted RBP5.63□□□□□ -1.51
PTA1YAL043C SNQ2P32568 1501 aaKnown RBP5.63□□□□□ -1.51
PTA1YAL043C PEP1P32319 1579 aa5.63□□□□□ -1.51
PTA1YAL043C TOP2P06786 1428 aaKnown RBP5.62□□□□□ -1.51
PTA1YAL043C RPO31P04051 1460 aa5.62□□□□□ -1.51
PTA1YAL043C PDR15Q04182 1529 aaKnown RBP5.6□□□□□ -1.51
PTA1YAL043C OXP1P28273 1286 aa5.59□□□□□ -1.51
PTA1YAL043C YCF1P39109 1515 aaKnown RBP5.59□□□□□ -1.51
PTA1YAL043C GEA1P47102 1408 aaPredicted RBP5.59□□□□□ -1.51
PTA1YAL043C NOP2P40991 618 aaKnown RBP5.59□□□□□ -1.51
PTA1YAL043C MYO4P32492 1471 aa5.59□□□□□ -1.52
PTA1YAL043C SMC4Q12267 1418 aa5.59□□□□□ -1.52
PTA1YAL043C SCY1P53009 804 aa5.58□□□□□ -1.52
PTA1YAL043C PAN1P32521 1480 aa5.57□□□□□ -1.52
PTA1YAL043C CKB1P43639 278 aa5.57□□□□□ -1.52
PTA1YAL043C BCH2P36122 765 aa5.56□□□□□ -1.52
PTA1YAL043C POL5P39985 1022 aaKnown RBP5.56□□□□□ -1.52
PTA1YAL043C YIL055CP40523 627 aaKnown RBP5.56□□□□□ -1.52
PTA1YAL043C SPP41P38904 1435 aa5.56□□□□□ -1.52
PTA1YAL043C TSC11P40061 1430 aa5.56□□□□□ -1.52
PTA1YAL043C TY2B-LR1P0C2J3 1770 aa5.55□□□□□ -1.52
PTA1YAL043C TY2B-FP0CX63 1770 aa5.55□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 40.7 ms