RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	FAP1	P53971	965 aa		8.3	□□□□□ -1.08
CLN3	YAL040C	PRY3	P47033	881 aa		7.89	□□□□□ -1.15
CLN3	YAL040C	MTC1	P47018	478 aa	Known RBP	7.58	□□□□□ -1.2
CLN3	YAL040C	HAA1	Q12753	694 aa	Known RBP	7.33	□□□□□ -1.24
CLN3	YAL040C	YCK3	P39962	524 aa		7.21	□□□□□ -1.26
CLN3	YAL040C	DRS1	P32892	752 aa	Known RBP	7.02	□□□□□ -1.29
CLN3	YAL040C	BUD31	P25337	157 aa	Predicted RBP	6.92	□□□□□ -1.3
CLN3	YAL040C	AAD16	Q02895	342 aa		6.76	□□□□□ -1.33
CLN3	YAL040C	PRI1	P10363	409 aa		6.45	□□□□□ -1.38
CLN3	YAL040C	SIS1	P25294	352 aa	Known RBP	6.38	□□□□□ -1.39
CLN3	YAL040C	ISW2	Q08773	1120 aa		6.33	□□□□□ -1.4
CLN3	YAL040C	YGL015C	P33199	130 aa		6.31	□□□□□ -1.4
CLN3	YAL040C	RPG1	P38249	964 aa	Known RBP	6.23	□□□□□ -1.41
CLN3	YAL040C	DIP2	Q12220	943 aa	Predicted RBP	6.17	□□□□□ -1.42
CLN3	YAL040C	TSR3	Q12094	313 aa	Known RBP	6.05	□□□□□ -1.44
CLN3	YAL040C	RSE1	Q04693	1361 aa	Known RBP	6.02	□□□□□ -1.45
CLN3	YAL040C	AVT3	P36062	692 aa		5.92	□□□□□ -1.46
CLN3	YAL040C	MRPL32	P25348	183 aa		5.86	□□□□□ -1.47
CLN3	YAL040C	BFR2	Q06631	534 aa	Known RBP	5.82	□□□□□ -1.48
CLN3	YAL040C	RPL17A	P05740	184 aa	Known RBP	5.81	□□□□□ -1.48
CLN3	YAL040C	REB1	P21538	810 aa		5.81	□□□□□ -1.48
CLN3	YAL040C	RPL17B	P46990	184 aa	Known RBP	5.81	□□□□□ -1.48
CLN3	YAL040C	UBP9	P39967	754 aa		5.79	□□□□□ -1.48
CLN3	YAL040C	RGA2	Q06407	1009 aa		5.6	□□□□□ -1.51
CLN3	YAL040C	SPT21	P35209	758 aa		5.54	□□□□□ -1.52
CLN3	YAL040C	CDC27	P38042	758 aa		5.51	□□□□□ -1.53
CLN3	YAL040C	YKR023W	P36119	530 aa	Known RBP	5.48	□□□□□ -1.53
CLN3	YAL040C	UBP10	P53874	792 aa	Predicted RBP	5.42	□□□□□ -1.54
CLN3	YAL040C	TFC8	Q12308	588 aa		5.38	□□□□□ -1.55
CLN3	YAL040C	HO	P09932	586 aa		5.37	□□□□□ -1.55
CLN3	YAL040C	MAP2	P38174	421 aa	Known RBP	5.35	□□□□□ -1.55
CLN3	YAL040C	RIM101	P33400	625 aa		5.34	□□□□□ -1.56
CLN3	YAL040C	DCD1	P06773	312 aa		5.32	□□□□□ -1.56
CLN3	YAL040C	SCY1	P53009	804 aa		5.25	□□□□□ -1.57
CLN3	YAL040C	SLX5	P32828	619 aa	Known RBP	5.2	□□□□□ -1.58
CLN3	YAL040C	TIF4632	P39936	914 aa	Known RBP	5.2	□□□□□ -1.58
CLN3	YAL040C	BCH2	P36122	765 aa		5.19	□□□□□ -1.58
CLN3	YAL040C	TGL3	P40308	642 aa		5.16	□□□□□ -1.58
CLN3	YAL040C	OXP1	P28273	1286 aa		5.14	□□□□□ -1.59
CLN3	YAL040C	YIL055C	P40523	627 aa	Known RBP	5.11	□□□□□ -1.59
CLN3	YAL040C	TFA1	P36100	482 aa		5.1	□□□□□ -1.59
CLN3	YAL040C	PTP3	P40048	928 aa		5.1	□□□□□ -1.59
CLN3	YAL040C	EPS1	P40557	701 aa		5.08	□□□□□ -1.6
CLN3	YAL040C	YJL171C	P46992	396 aa		5.07	□□□□□ -1.6
CLN3	YAL040C	BDF1	P35817	686 aa		5.04	□□□□□ -1.6
CLN3	YAL040C	RSM7	P47150	247 aa		5.02	□□□□□ -1.61
CLN3	YAL040C	BBC1	P47068	1157 aa		5.01	□□□□□ -1.61
CLN3	YAL040C	YAH1	Q12184	172 aa	Known RBP	5	□□□□□ -1.61
CLN3	YAL040C	AI2	P03876	854 aa		4.97	□□□□□ -1.61
CLN3	YAL040C	RGA1	P39083	1007 aa		4.96	□□□□□ -1.62
CLN3	YAL040C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CLN3	YAL040C	YOR238W	Q08634	303 aa		4.93	□□□□□ -1.62
CLN3	YAL040C	MST1	P07236	462 aa		4.92	□□□□□ -1.62
CLN3	YAL040C	YAP5	P40574	245 aa		4.89	□□□□□ -1.63
CLN3	YAL040C	YLR271W	Q06152	274 aa		4.89	□□□□□ -1.63
CLN3	YAL040C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
CLN3	YAL040C	SSP1	P38871	571 aa		4.85	□□□□□ -1.63
CLN3	YAL040C	PSD2	P53037	1138 aa	Known RBP	4.84	□□□□□ -1.63
CLN3	YAL040C	AIR2	Q12476	344 aa	Known RBP	4.84	□□□□□ -1.63
CLN3	YAL040C	YBL029C-A	Q3E756	94 aa		4.84	□□□□□ -1.63
CLN3	YAL040C	GTT3	P39996	337 aa		4.8	□□□□□ -1.64
CLN3	YAL040C	VNX1	P42839	908 aa		4.8	□□□□□ -1.64
CLN3	YAL040C	MRM1	P25270	412 aa		4.78	□□□□□ -1.64
CLN3	YAL040C	WSC3	Q12215	556 aa		4.78	□□□□□ -1.64
CLN3	YAL040C	SPP1	Q03012	353 aa		4.77	□□□□□ -1.65
CLN3	YAL040C	TIF11	P38912	153 aa	Known RBP	4.74	□□□□□ -1.65
CLN3	YAL040C	MGA2	P40578	1113 aa		4.74	□□□□□ -1.65
CLN3	YAL040C	PIB1	Q06651	286 aa		4.72	□□□□□ -1.65
CLN3	YAL040C	FKH1	P40466	484 aa		4.71	□□□□□ -1.66
CLN3	YAL040C	CST9	Q06032	482 aa		4.71	□□□□□ -1.66
CLN3	YAL040C	BMT6	Q12291	365 aa		4.7	□□□□□ -1.66
CLN3	YAL040C	RTG3	P38165	486 aa		4.69	□□□□□ -1.66
CLN3	YAL040C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.69	□□□□□ -1.66	not detected
CLN3	YAL040C	MSB4	Q12317	492 aa		4.68	□□□□□ -1.66
CLN3	YAL040C	VPS29	P38759	282 aa		4.67	□□□□□ -1.66
CLN3	YAL040C	ULI1	P43604	169 aa		4.67	□□□□□ -1.66
CLN3	YAL040C	DBP1	P24784	617 aa	Known RBP	4.66	□□□□□ -1.66
CLN3	YAL040C	EAP1	P36041	632 aa	Known RBP	4.66	□□□□□ -1.66
CLN3	YAL040C	LDB19	Q12502	818 aa		4.64	□□□□□ -1.67
CLN3	YAL040C	YFR006W	P43590	535 aa		4.63	□□□□□ -1.67
CLN3	YAL040C	YOL036W	Q08206	761 aa		4.63	□□□□□ -1.67
CLN3	YAL040C	IOC2	Q12072	812 aa		4.63	□□□□□ -1.67
CLN3	YAL040C	VMA1	P17255	1071 aa	Known RBP	4.62	□□□□□ -1.67
CLN3	YAL040C	STS1	P38637	319 aa		4.62	□□□□□ -1.67
CLN3	YAL040C	SET4	P42948	560 aa		4.62	□□□□□ -1.67
CLN3	YAL040C	SAM3	Q08986	587 aa		4.6	□□□□□ -1.67
CLN3	YAL040C	RCR1	P38212	213 aa		4.59	□□□□□ -1.67
CLN3	YAL040C	TRP5	P00931	707 aa	Known RBP	4.58	□□□□□ -1.68
CLN3	YAL040C	RTG1	P32607	177 aa		4.58	□□□□□ -1.68
CLN3	YAL040C	ABP1	P15891	592 aa	Known RBP	4.57	□□□□□ -1.68
CLN3	YAL040C	YNL035C	P53962	389 aa	Known RBP	4.56	□□□□□ -1.68
CLN3	YAL040C	SEC61	P32915	480 aa		4.55	□□□□□ -1.68
CLN3	YAL040C	GYP5	Q12344	894 aa		4.55	□□□□□ -1.68
CLN3	YAL040C	NCR1	Q12200	1170 aa		4.54	□□□□□ -1.68
CLN3	YAL040C	TFG1	P41895	735 aa	Predicted RBP	4.52	□□□□□ -1.69
CLN3	YAL040C	JIP4	Q03361	876 aa		4.52	□□□□□ -1.69
CLN3	YAL040C	HTA1	P04911	132 aa	Known RBP	4.51	□□□□□ -1.69
CLN3	YAL040C	HTA2	P04912	132 aa		4.51	□□□□□ -1.69
CLN3	YAL040C	DCW1	P36091	449 aa		4.49	□□□□□ -1.69
CLN3	YAL040C	MAK11	P20484	414 aa	Known RBP	4.49	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms