RNA–Protein interactions for RNA: ENST00000600940.1

USP29-204, Transcript of ubiquitin specific peptidase 29, humanhuman

TSL 4

Gene USP29, Length 533 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP29-204ENST00000600940 NISCHQ9Y2I1 1504 aa34.44■■■■□ 3.1
USP29-204ENST00000600940 ABCC9O60706 1549 aa30.99■■■□□ 2.55
USP29-204ENST00000600940 CCDC180Q9P1Z9 1646 aa30.89■■■□□ 2.54
USP29-204ENST00000600940 AEBP2Q6ZN18 517 aaPredicted RBP30.22■■■□□ 2.43
USP29-204ENST00000600940 RB1CC1Q8TDY2 1594 aa29.47■■■□□ 2.31
USP29-204ENST00000600940 CHIC1Q5VXU3 224 aa29.38■■■□□ 2.29
USP29-204ENST00000600940 DCAF8L2P0C7V8 631 aa29.34■■■□□ 2.29
USP29-204ENST00000600940 NACADO15069 1562 aa29.23■■■□□ 2.27
USP29-204ENST00000600940 DNAJC5BQ9UF47 199 aa29■■■□□ 2.23
USP29-204ENST00000600940 PABPN1Q86U42 306 aaKnown RBP eCLIP28.9■■■□□ 2.22
USP29-204ENST00000600940 UNC13AQ9UPW8 1703 aa28.76■■■□□ 2.19
USP29-204ENST00000600940 MYO15BQ96JP2 1530 aa28.74■■■□□ 2.19
USP29-204ENST00000600940 BICRAQ9NZM4 1560 aa28.51■■■□□ 2.15
USP29-204ENST00000600940 ZCCHC6Q5VYS8 1495 aaKnown RBP28.51■■■□□ 2.15
USP29-204ENST00000600940 DCAF1Q9Y4B6 1507 aa28.39■■■□□ 2.14
USP29-204ENST00000600940 SCRIBQ14160 1630 aa28.24■■■□□ 2.11
USP29-204ENST00000600940 SHROOM4Q9ULL8 1493 aa28.13■■■□□ 2.09
USP29-204ENST00000600940 CC2D2AQ9P2K1 1620 aa27.95■■■□□ 2.06
USP29-204ENST00000600940 CECR2Q9BXF3 1484 aa27.89■■■□□ 2.06
USP29-204ENST00000600940 EIF4G1Q04637 1599 aaKnown RBP27.87■■■□□ 2.05
USP29-204ENST00000600940 NCAPD3P42695 1498 aa26.96■■□□□ 1.91
USP29-204ENST00000600940 ATAD2BQ9ULI0 1458 aa26.9■■□□□ 1.9
USP29-204ENST00000600940 SMARCA4P51532 1647 aa26.87■■□□□ 1.89
USP29-204ENST00000600940 SMARCA2P51531 1590 aa26.85■■□□□ 1.89
USP29-204ENST00000600940 ERCC6Q03468 1493 aa26.82■■□□□ 1.88
USP29-204ENST00000600940 BAZ1AQ9NRL2 1556 aaPredicted RBP26.76■■□□□ 1.87
USP29-204ENST00000600940 HMGXB3Q12766 1538 aa26.75■■□□□ 1.87
USP29-204ENST00000600940 BAZ1BQ9UIG0 1483 aaKnown RBP26.7■■□□□ 1.87
USP29-204ENST00000600940 DNAJC5Q9H3Z4 198 aa26.67■■□□□ 1.86
USP29-204ENST00000600940 CUX2O14529 1486 aa26.65■■□□□ 1.86
USP29-204ENST00000600940 NESP48681 1621 aa26.58■■□□□ 1.85
USP29-204ENST00000600940 MROH2BQ7Z745 1585 aa26.54■■□□□ 1.84
USP29-204ENST00000600940 PEG3Q9GZU2 1588 aa26.54■■□□□ 1.84
USP29-204ENST00000600940 LAMC3Q9Y6N6 1575 aa26.39■■□□□ 1.82
USP29-204ENST00000600940 PDS5BQ9NTI5 1447 aa26.29■■□□□ 1.8
USP29-204ENST00000600940 WIZO95785 1651 aa26.26■■□□□ 1.79
USP29-204ENST00000600940 THOC2Q8NI27 1593 aaKnown RBP26.25■■□□□ 1.79
USP29-204ENST00000600940 KIF21AQ7Z4S6 1674 aa26.25■■□□□ 1.79
USP29-204ENST00000600940 CADPSQ9ULU8 1353 aa26.19■■□□□ 1.78
USP29-204ENST00000600940 MRC2Q9UBG0 1479 aa26.03■■□□□ 1.76
USP29-204ENST00000600940 RSF1Q96T23 1441 aaPredicted RBP26■■□□□ 1.75
USP29-204ENST00000600940 CEP164Q9UPV0 1460 aa25.95■■□□□ 1.74
USP29-204ENST00000600940 WDR62O43379 1518 aa25.91■■□□□ 1.74
USP29-204ENST00000600940 FANCD2Q9BXW9 1451 aa25.91■■□□□ 1.74
USP29-204ENST00000600940 TOP2AP11388 1531 aaKnown RBP25.9■■□□□ 1.74
USP29-204ENST00000600940 CFTRP13569 1480 aa25.85■■□□□ 1.73
USP29-204ENST00000600940 SENP3Q9H4L4 574 aaPredicted RBP25.79■■□□□ 1.72
USP29-204ENST00000600940 PHF23Q9BUL5 403 aaPredicted RBP25.76■■□□□ 1.71
USP29-204ENST00000600940 URB2Q14146 1524 aaKnown RBP25.65■■□□□ 1.7
USP29-204ENST00000600940 TRIM41Q8WV44 630 aa25.65■■□□□ 1.7
USP29-204ENST00000600940 CCDC88BA6NC98 1476 aa25.63■■□□□ 1.69
USP29-204ENST00000600940 PRDM2Q13029 1718 aa25.62■■□□□ 1.69
USP29-204ENST00000600940 OSCARQ8IYS5 282 aa25.54■■□□□ 1.68
USP29-204ENST00000600940 IFT140Q96RY7 1462 aa25.41■■□□□ 1.66
USP29-204ENST00000600940 TOPBP1Q92547 1522 aa25.39■■□□□ 1.66
USP29-204ENST00000600940 ABCC8Q09428 1581 aa25.37■■□□□ 1.65
USP29-204ENST00000600940 ZNF608Q9ULD9 1512 aaPredicted RBP25.36■■□□□ 1.65
USP29-204ENST00000600940 DNMBPQ6XZF7 1577 aa25.3■■□□□ 1.64
USP29-204ENST00000600940 EIF4G3O43432 1585 aaKnown RBP25.22■■□□□ 1.63
USP29-204ENST00000600940 AQRO60306 1485 aaKnown RBP eCLIP25.16■■□□□ 1.62
USP29-204ENST00000600940 FBLN2P98095 1184 aa25.15■■□□□ 1.62
USP29-204ENST00000600940 TARBP1Q13395 1621 aaKnown RBP25.13■■□□□ 1.61
USP29-204ENST00000600940 POLA1P09884 1462 aaPredicted RBP25.13■■□□□ 1.61
USP29-204ENST00000600940 RIMBP3CA6NJZ7 1639 aa25.12■■□□□ 1.61
USP29-204ENST00000600940 RIMBP3BA6NNM3 1639 aa25.12■■□□□ 1.61
USP29-204ENST00000600940 RIMBP3Q9UFD9 1639 aa25.12■■□□□ 1.61
USP29-204ENST00000600940 SOGA1O94964 1423 aa25.08■■□□□ 1.61
USP29-204ENST00000600940 RAD54L2Q9Y4B4 1467 aa25.07■■□□□ 1.6
USP29-204ENST00000600940 CHD1O14646 1710 aa25.06■■□□□ 1.6
USP29-204ENST00000600940 SUPT5HO00267 1087 aaKnown RBP25.05■■□□□ 1.6
USP29-204ENST00000600940 ARHGEF11O15085 1522 aa25.04■■□□□ 1.6
USP29-204ENST00000600940 TDRD9Q8NDG6 1382 aaKnown RBP25.04■■□□□ 1.6
USP29-204ENST00000600940 FGD5Q6ZNL6 1462 aa25■■□□□ 1.59
USP29-204ENST00000600940 CYB5RLQ6IPT4 315 aa24.98■■□□□ 1.59
USP29-204ENST00000600940 CUX1P39880 1505 aa24.94■■□□□ 1.58
USP29-204ENST00000600940 CHMP7Q8WUX9 453 aaPredicted RBP24.91■■□□□ 1.58
USP29-204ENST00000600940 SNAPC4Q5SXM2 1469 aa24.89■■□□□ 1.58
USP29-204ENST00000600940 WDR97A6NE52 1622 aa24.87■■□□□ 1.57
USP29-204ENST00000600940 GRIN2BQ13224 1484 aa24.83■■□□□ 1.56
USP29-204ENST00000600940 MAGI1Q96QZ7 1491 aaPredicted RBP24.81■■□□□ 1.56
USP29-204ENST00000600940 TRHP20396 242 aaPredicted RBP24.78■■□□□ 1.56
USP29-204ENST00000600940 ARAP1Q96P48 1450 aa24.77■■□□□ 1.56
USP29-204ENST00000600940 SYNJ1O43426 1573 aa24.77■■□□□ 1.56
USP29-204ENST00000600940 GAPVD1Q14C86 1478 aa24.76■■□□□ 1.55
USP29-204ENST00000600940 SYNJ2O15056 1496 aa24.74■■□□□ 1.55
USP29-204ENST00000600940 PBRM1Q86U86 1689 aa24.73■■□□□ 1.55
USP29-204ENST00000600940 CLASP1Q7Z460 1538 aa24.69■■□□□ 1.54
USP29-204ENST00000600940 ABCA10Q8WWZ4 1543 aa24.67■■□□□ 1.54
USP29-204ENST00000600940 WRNQ14191 1432 aaPredicted RBP eCLIP24.65■■□□□ 1.54
USP29-204ENST00000600940 ABCA5Q8WWZ7 1642 aa24.62■■□□□ 1.53
USP29-204ENST00000600940 TOP2BQ02880 1626 aa24.55■■□□□ 1.52
USP29-204ENST00000600940 BIVM-ERCC5R4GMW8 1640 aa24.53■■□□□ 1.52
USP29-204ENST00000600940 GRIN2AQ12879 1464 aa24.5■■□□□ 1.51
USP29-204ENST00000600940 ADAMTS12P58397 1594 aa24.46■■□□□ 1.51
USP29-204ENST00000600940 FHAD1B1AJZ9 1412 aa24.43■■□□□ 1.5
USP29-204ENST00000600940 CEP170Q5SW79 1584 aa24.38■■□□□ 1.49
USP29-204ENST00000600940 ERICH3Q5RHP9 1530 aa24.38■■□□□ 1.49
USP29-204ENST00000600940 NUP160Q12769 1436 aa24.36■■□□□ 1.49
USP29-204ENST00000600940 ERCC6L2Q5T890 1561 aa24.33■■□□□ 1.49
USP29-204ENST00000600940 SHROOM2Q13796 1616 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms