RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 NISCHQ9Y2I1 1504 aa29.97■■■□□ 2.39
SHKBP1-209ENST00000595803 ABCC9O60706 1549 aa27.86■■■□□ 2.05
SHKBP1-209ENST00000595803 CCDC180Q9P1Z9 1646 aa27■■□□□ 1.91
SHKBP1-209ENST00000595803 DNAJC5BQ9UF47 199 aa26.88■■□□□ 1.89
SHKBP1-209ENST00000595803 RB1CC1Q8TDY2 1594 aa26.11■■□□□ 1.77
SHKBP1-209ENST00000595803 PABPN1Q86U42 306 aaKnown RBP eCLIP25.74■■□□□ 1.71
SHKBP1-209ENST00000595803 NACADO15069 1562 aa25.7■■□□□ 1.71
SHKBP1-209ENST00000595803 UNC13AQ9UPW8 1703 aa25.54■■□□□ 1.68
SHKBP1-209ENST00000595803 BICRAQ9NZM4 1560 aa25.41■■□□□ 1.66
SHKBP1-209ENST00000595803 DNAJC5Q9H3Z4 198 aa25.32■■□□□ 1.64
SHKBP1-209ENST00000595803 DCAF8L2P0C7V8 631 aa25.29■■□□□ 1.64
SHKBP1-209ENST00000595803 CECR2Q9BXF3 1484 aa25.18■■□□□ 1.62
SHKBP1-209ENST00000595803 CC2D2AQ9P2K1 1620 aa25.12■■□□□ 1.61
SHKBP1-209ENST00000595803 ZCCHC6Q5VYS8 1495 aaKnown RBP25.07■■□□□ 1.6
SHKBP1-209ENST00000595803 MYO15BQ96JP2 1530 aa25.06■■□□□ 1.6
SHKBP1-209ENST00000595803 SHROOM4Q9ULL8 1493 aa24.97■■□□□ 1.59
SHKBP1-209ENST00000595803 EIF4G1Q04637 1599 aaKnown RBP24.86■■□□□ 1.57
SHKBP1-209ENST00000595803 DCAF1Q9Y4B6 1507 aa24.78■■□□□ 1.56
SHKBP1-209ENST00000595803 SCRIBQ14160 1630 aa24.56■■□□□ 1.52
SHKBP1-209ENST00000595803 CUX2O14529 1486 aa24.38■■□□□ 1.49
SHKBP1-209ENST00000595803 ERCC6Q03468 1493 aa24.12■■□□□ 1.45
SHKBP1-209ENST00000595803 TRIM41Q8WV44 630 aa23.86■■□□□ 1.41
SHKBP1-209ENST00000595803 NCAPD3P42695 1498 aa23.73■■□□□ 1.39
SHKBP1-209ENST00000595803 NESP48681 1621 aa23.69■■□□□ 1.38
SHKBP1-209ENST00000595803 THOC2Q8NI27 1593 aaKnown RBP23.66■■□□□ 1.38
SHKBP1-209ENST00000595803 ATAD2BQ9ULI0 1458 aa23.54■■□□□ 1.36
SHKBP1-209ENST00000595803 HMGXB3Q12766 1538 aa23.52■■□□□ 1.36
SHKBP1-209ENST00000595803 SMARCA2P51531 1590 aa23.47■■□□□ 1.35
SHKBP1-209ENST00000595803 KIF21AQ7Z4S6 1674 aa23.37■■□□□ 1.33
SHKBP1-209ENST00000595803 LAMC3Q9Y6N6 1575 aa23.36■■□□□ 1.33
SHKBP1-209ENST00000595803 SMARCA4P51532 1647 aa23.33■■□□□ 1.32
SHKBP1-209ENST00000595803 SUPT5HO00267 1087 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-209ENST00000595803 BAZ1BQ9UIG0 1483 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-209ENST00000595803 PDS5BQ9NTI5 1447 aa23.23■■□□□ 1.31
SHKBP1-209ENST00000595803 BAZ1AQ9NRL2 1556 aaPredicted RBP23.21■■□□□ 1.31
SHKBP1-209ENST00000595803 RSF1Q96T23 1441 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-209ENST00000595803 MROH2BQ7Z745 1585 aa23.13■■□□□ 1.29
SHKBP1-209ENST00000595803 MRC2Q9UBG0 1479 aa23.12■■□□□ 1.29
SHKBP1-209ENST00000595803 WDR62O43379 1518 aa23.11■■□□□ 1.29
SHKBP1-209ENST00000595803 PEG3Q9GZU2 1588 aa23.1■■□□□ 1.29
SHKBP1-209ENST00000595803 OSCARQ8IYS5 282 aa23.03■■□□□ 1.28
SHKBP1-209ENST00000595803 CADPSQ9ULU8 1353 aa22.95■■□□□ 1.26
SHKBP1-209ENST00000595803 RIMBP3CA6NJZ7 1639 aa22.93■■□□□ 1.26
SHKBP1-209ENST00000595803 RIMBP3BA6NNM3 1639 aa22.93■■□□□ 1.26
SHKBP1-209ENST00000595803 RIMBP3Q9UFD9 1639 aa22.93■■□□□ 1.26
SHKBP1-209ENST00000595803 WIZO95785 1651 aa22.91■■□□□ 1.26
SHKBP1-209ENST00000595803 CEP164Q9UPV0 1460 aa22.85■■□□□ 1.25
SHKBP1-209ENST00000595803 ARHGEF11O15085 1522 aa22.77■■□□□ 1.24
SHKBP1-209ENST00000595803 FANCD2Q9BXW9 1451 aa22.73■■□□□ 1.23
SHKBP1-209ENST00000595803 TOP2AP11388 1531 aaKnown RBP22.68■■□□□ 1.22
SHKBP1-209ENST00000595803 URB2Q14146 1524 aaKnown RBP22.62■■□□□ 1.21
SHKBP1-209ENST00000595803 TRHP20396 242 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-209ENST00000595803 AEBP2Q6ZN18 517 aaPredicted RBP22.61■■□□□ 1.21
SHKBP1-209ENST00000595803 CYB5RLQ6IPT4 315 aa22.56■■□□□ 1.2
SHKBP1-209ENST00000595803 CFTRP13569 1480 aa22.54■■□□□ 1.2
SHKBP1-209ENST00000595803 ARAP1Q96P48 1450 aa22.49■■□□□ 1.19
SHKBP1-209ENST00000595803 CCDC88BA6NC98 1476 aa22.48■■□□□ 1.19
SHKBP1-209ENST00000595803 ZNF608Q9ULD9 1512 aaPredicted RBP22.48■■□□□ 1.19
SHKBP1-209ENST00000595803 IFT140Q96RY7 1462 aa22.41■■□□□ 1.18
SHKBP1-209ENST00000595803 EIF4G3O43432 1585 aaKnown RBP22.35■■□□□ 1.17
SHKBP1-209ENST00000595803 CHD1O14646 1710 aa22.34■■□□□ 1.17
SHKBP1-209ENST00000595803 PRDM2Q13029 1718 aa22.26■■□□□ 1.15
SHKBP1-209ENST00000595803 TOPBP1Q92547 1522 aa22.21■■□□□ 1.15
SHKBP1-209ENST00000595803 AQRO60306 1485 aaKnown RBP eCLIP22.14■■□□□ 1.13
SHKBP1-209ENST00000595803 FBLN2P98095 1184 aa22.13■■□□□ 1.13
SHKBP1-209ENST00000595803 CHIC1Q5VXU3 224 aa22.09■■□□□ 1.13
SHKBP1-209ENST00000595803 TARBP1Q13395 1621 aaKnown RBP22.09■■□□□ 1.13
SHKBP1-209ENST00000595803 CLASP1Q7Z460 1538 aa22.06■■□□□ 1.12
SHKBP1-209ENST00000595803 DNMBPQ6XZF7 1577 aa22.05■■□□□ 1.12
SHKBP1-209ENST00000595803 ABCC8Q09428 1581 aa22.04■■□□□ 1.12
SHKBP1-209ENST00000595803 SYNJ1O43426 1573 aa21.94■■□□□ 1.1
SHKBP1-209ENST00000595803 POLA1P09884 1462 aaPredicted RBP21.93■■□□□ 1.1
SHKBP1-209ENST00000595803 SNAPC4Q5SXM2 1469 aa21.92■■□□□ 1.1
SHKBP1-209ENST00000595803 GAPVD1Q14C86 1478 aa21.86■■□□□ 1.09
SHKBP1-209ENST00000595803 RAD54L2Q9Y4B4 1467 aa21.85■■□□□ 1.09
SHKBP1-209ENST00000595803 TDRD9Q8NDG6 1382 aaKnown RBP21.85■■□□□ 1.09
SHKBP1-209ENST00000595803 WRNQ14191 1432 aaPredicted RBP eCLIP21.81■■□□□ 1.08
SHKBP1-209ENST00000595803 CHMP7Q8WUX9 453 aaPredicted RBP21.81■■□□□ 1.08
SHKBP1-209ENST00000595803 MAGI1Q96QZ7 1491 aaPredicted RBP21.81■■□□□ 1.08
SHKBP1-209ENST00000595803 ILDR1Q86SU0 546 aaPredicted RBP21.8■■□□□ 1.08
SHKBP1-209ENST00000595803 WDR97A6NE52 1622 aa21.79■■□□□ 1.08
SHKBP1-209ENST00000595803 SOGA1O94964 1423 aa21.75■■□□□ 1.07
SHKBP1-209ENST00000595803 SYNJ2O15056 1496 aa21.75■■□□□ 1.07
SHKBP1-209ENST00000595803 GRIN2BQ13224 1484 aa21.71■■□□□ 1.07
SHKBP1-209ENST00000595803 FGD5Q6ZNL6 1462 aa21.66■■□□□ 1.06
SHKBP1-209ENST00000595803 ERCC6L2Q5T890 1561 aa21.65■■□□□ 1.06
SHKBP1-209ENST00000595803 KIF13AQ9H1H9 1805 aa21.64■■□□□ 1.06
SHKBP1-209ENST00000595803 CUX1P39880 1505 aa21.64■■□□□ 1.05
SHKBP1-209ENST00000595803 TOP2BQ02880 1626 aa21.62■■□□□ 1.05
SHKBP1-209ENST00000595803 PBRM1Q86U86 1689 aa21.6■■□□□ 1.05
SHKBP1-209ENST00000595803 BIVM-ERCC5R4GMW8 1640 aa21.59■■□□□ 1.05
SHKBP1-209ENST00000595803 KDM4FA0A1W2PPD8 638 aa21.53■■□□□ 1.04
SHKBP1-209ENST00000595803 CEP170Q5SW79 1584 aa21.52■■□□□ 1.04
SHKBP1-209ENST00000595803 FAM9AQ8IZU1 332 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-209ENST00000595803 GRIN2AQ12879 1464 aa21.45■■□□□ 1.02
SHKBP1-209ENST00000595803 ABCA5Q8WWZ7 1642 aa21.44■■□□□ 1.02
SHKBP1-209ENST00000595803 SHROOM2Q13796 1616 aa21.43■■□□□ 1.02
SHKBP1-209ENST00000595803 NUP160Q12769 1436 aa21.4■■□□□ 1.02
SHKBP1-209ENST00000595803 ABCC10Q5T3U5 1492 aa21.39■■□□□ 1.01
SHKBP1-209ENST00000595803 KDM6BO15054 1643 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms