RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 NISCHQ9Y2I1 1504 aa23.05■■□□□ 1.28
ZNF540-208ENST00000589857 ABCC9O60706 1549 aa21.09■□□□□ 0.97
ZNF540-208ENST00000589857 CCDC180Q9P1Z9 1646 aa20.79■□□□□ 0.92
ZNF540-208ENST00000589857 RB1CC1Q8TDY2 1594 aa20.02■□□□□ 0.8
ZNF540-208ENST00000589857 DNAJC5BQ9UF47 199 aa19.98■□□□□ 0.79
ZNF540-208ENST00000589857 NACADO15069 1562 aa19.82■□□□□ 0.76
ZNF540-208ENST00000589857 DCAF8L2P0C7V8 631 aa19.75■□□□□ 0.75
ZNF540-208ENST00000589857 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.73
ZNF540-208ENST00000589857 MYO15BQ96JP2 1530 aa19.46■□□□□ 0.71
ZNF540-208ENST00000589857 AEBP2Q6ZN18 517 aaPredicted RBP19.31■□□□□ 0.68
ZNF540-208ENST00000589857 UNC13AQ9UPW8 1703 aa19.29■□□□□ 0.68
ZNF540-208ENST00000589857 BICRAQ9NZM4 1560 aa19.27■□□□□ 0.67
ZNF540-208ENST00000589857 SHROOM4Q9ULL8 1493 aa19.23■□□□□ 0.67
ZNF540-208ENST00000589857 ZCCHC6Q5VYS8 1495 aaKnown RBP19.09■□□□□ 0.65
ZNF540-208ENST00000589857 CECR2Q9BXF3 1484 aa19.09■□□□□ 0.65
ZNF540-208ENST00000589857 DCAF1Q9Y4B6 1507 aa19.08■□□□□ 0.64
ZNF540-208ENST00000589857 CC2D2AQ9P2K1 1620 aa19■□□□□ 0.63
ZNF540-208ENST00000589857 EIF4G1Q04637 1599 aaKnown RBP18.92■□□□□ 0.62
ZNF540-208ENST00000589857 SCRIBQ14160 1630 aa18.88■□□□□ 0.61
ZNF540-208ENST00000589857 DNAJC5Q9H3Z4 198 aa18.75■□□□□ 0.59
ZNF540-208ENST00000589857 CUX2O14529 1486 aa18.4■□□□□ 0.54
ZNF540-208ENST00000589857 ERCC6Q03468 1493 aa18.35■□□□□ 0.53
ZNF540-208ENST00000589857 NCAPD3P42695 1498 aa18.3■□□□□ 0.52
ZNF540-208ENST00000589857 SUPT5HO00267 1087 aaKnown RBP18.25■□□□□ 0.51
ZNF540-208ENST00000589857 CHIC1Q5VXU3 224 aa18.24■□□□□ 0.51
ZNF540-208ENST00000589857 ATAD2BQ9ULI0 1458 aa18.15■□□□□ 0.5
ZNF540-208ENST00000589857 SMARCA2P51531 1590 aa18.14■□□□□ 0.49
ZNF540-208ENST00000589857 HMGXB3Q12766 1538 aa18.09■□□□□ 0.49
ZNF540-208ENST00000589857 BAZ1BQ9UIG0 1483 aaKnown RBP18.01■□□□□ 0.47
ZNF540-208ENST00000589857 SMARCA4P51532 1647 aa18■□□□□ 0.47
ZNF540-208ENST00000589857 BAZ1AQ9NRL2 1556 aaPredicted RBP17.97■□□□□ 0.47
ZNF540-208ENST00000589857 NESP48681 1621 aa17.96■□□□□ 0.47
ZNF540-208ENST00000589857 PDS5BQ9NTI5 1447 aa17.93■□□□□ 0.46
ZNF540-208ENST00000589857 LAMC3Q9Y6N6 1575 aa17.91■□□□□ 0.46
ZNF540-208ENST00000589857 PEG3Q9GZU2 1588 aa17.86■□□□□ 0.45
ZNF540-208ENST00000589857 THOC2Q8NI27 1593 aaKnown RBP17.82■□□□□ 0.44
ZNF540-208ENST00000589857 TRIM41Q8WV44 630 aa17.79■□□□□ 0.44
ZNF540-208ENST00000589857 CADPSQ9ULU8 1353 aa17.76■□□□□ 0.43
ZNF540-208ENST00000589857 MROH2BQ7Z745 1585 aa17.7■□□□□ 0.42
ZNF540-208ENST00000589857 RSF1Q96T23 1441 aaPredicted RBP17.69■□□□□ 0.42
ZNF540-208ENST00000589857 MRC2Q9UBG0 1479 aa17.69■□□□□ 0.42
ZNF540-208ENST00000589857 KIF21AQ7Z4S6 1674 aa17.67■□□□□ 0.42
ZNF540-208ENST00000589857 OSCARQ8IYS5 282 aa17.61■□□□□ 0.41
ZNF540-208ENST00000589857 WDR62O43379 1518 aa17.6■□□□□ 0.41
ZNF540-208ENST00000589857 CEP164Q9UPV0 1460 aa17.58■□□□□ 0.41
ZNF540-208ENST00000589857 FANCD2Q9BXW9 1451 aa17.5■□□□□ 0.39
ZNF540-208ENST00000589857 CFTRP13569 1480 aa17.44■□□□□ 0.38
ZNF540-208ENST00000589857 WIZO95785 1651 aa17.42■□□□□ 0.38
ZNF540-208ENST00000589857 URB2Q14146 1524 aaKnown RBP17.29■□□□□ 0.36
ZNF540-208ENST00000589857 TOP2AP11388 1531 aaKnown RBP17.28■□□□□ 0.36
ZNF540-208ENST00000589857 IFT140Q96RY7 1462 aa17.26■□□□□ 0.35
ZNF540-208ENST00000589857 ABCC8Q09428 1581 aa17.21■□□□□ 0.35
ZNF540-208ENST00000589857 RIMBP3CA6NJZ7 1639 aa17.18■□□□□ 0.34
ZNF540-208ENST00000589857 RIMBP3BA6NNM3 1639 aa17.18■□□□□ 0.34
ZNF540-208ENST00000589857 RIMBP3Q9UFD9 1639 aa17.18■□□□□ 0.34
ZNF540-208ENST00000589857 CYB5RLQ6IPT4 315 aa17.16■□□□□ 0.34
ZNF540-208ENST00000589857 ARHGEF11O15085 1522 aa17.15■□□□□ 0.34
ZNF540-208ENST00000589857 ZNF608Q9ULD9 1512 aaPredicted RBP17.13■□□□□ 0.33
ZNF540-208ENST00000589857 TRHP20396 242 aaPredicted RBP17.13■□□□□ 0.33
ZNF540-208ENST00000589857 TOPBP1Q92547 1522 aa17.11■□□□□ 0.33
ZNF540-208ENST00000589857 PRDM2Q13029 1718 aa17.1■□□□□ 0.33
ZNF540-208ENST00000589857 CCDC88BA6NC98 1476 aa17.09■□□□□ 0.33
ZNF540-208ENST00000589857 FBLN2P98095 1184 aa17.08■□□□□ 0.32
ZNF540-208ENST00000589857 DNMBPQ6XZF7 1577 aa17.02■□□□□ 0.32
ZNF540-208ENST00000589857 EIF4G3O43432 1585 aaKnown RBP17.02■□□□□ 0.31
ZNF540-208ENST00000589857 AQRO60306 1485 aaKnown RBP eCLIP16.99■□□□□ 0.31
ZNF540-208ENST00000589857 LOC105371045A0A1W2PR82 267 aa16.98■□□□□ 0.31
ZNF540-208ENST00000589857 CHMP7Q8WUX9 453 aaPredicted RBP16.94■□□□□ 0.3
ZNF540-208ENST00000589857 ARAP1Q96P48 1450 aa16.93■□□□□ 0.3
ZNF540-208ENST00000589857 SOGA1O94964 1423 aa16.92■□□□□ 0.3
ZNF540-208ENST00000589857 POLA1P09884 1462 aaPredicted RBP16.91■□□□□ 0.3
ZNF540-208ENST00000589857 TARBP1Q13395 1621 aaKnown RBP16.9■□□□□ 0.3
ZNF540-208ENST00000589857 CHD1O14646 1710 aa16.88■□□□□ 0.29
ZNF540-208ENST00000589857 TDRD9Q8NDG6 1382 aaKnown RBP16.88■□□□□ 0.29
ZNF540-208ENST00000589857 WDR97A6NE52 1622 aa16.86■□□□□ 0.29
ZNF540-208ENST00000589857 EEA1Q15075 1411 aa16.85■□□□□ 0.29
ZNF540-208ENST00000589857 SYNJ1O43426 1573 aa16.83■□□□□ 0.28
ZNF540-208ENST00000589857 MAGI1Q96QZ7 1491 aaPredicted RBP16.83■□□□□ 0.28
ZNF540-208ENST00000589857 RAD54L2Q9Y4B4 1467 aa16.82■□□□□ 0.28
ZNF540-208ENST00000589857 SNAPC4Q5SXM2 1469 aa16.81■□□□□ 0.28
ZNF540-208ENST00000589857 TRIM26Q12899 539 aaPredicted RBP16.81■□□□□ 0.28
ZNF540-208ENST00000589857 PCGF6Q9BYE7 350 aa16.8■□□□□ 0.28
ZNF540-208ENST00000589857 GRIN2BQ13224 1484 aa16.8■□□□□ 0.28
ZNF540-208ENST00000589857 HRCP23327 699 aa16.79■□□□□ 0.28
ZNF540-208ENST00000589857 FAM9AQ8IZU1 332 aaPredicted RBP16.79■□□□□ 0.28
ZNF540-208ENST00000589857 SYNJ2O15056 1496 aa16.77■□□□□ 0.28
ZNF540-208ENST00000589857 FGD5Q6ZNL6 1462 aa16.76■□□□□ 0.27
ZNF540-208ENST00000589857 CLASP1Q7Z460 1538 aa16.75■□□□□ 0.27
ZNF540-208ENST00000589857 WRNQ14191 1432 aaPredicted RBP eCLIP16.7■□□□□ 0.26
ZNF540-208ENST00000589857 GAPVD1Q14C86 1478 aa16.68■□□□□ 0.26
ZNF540-208ENST00000589857 CUX1P39880 1505 aa16.65■□□□□ 0.26
ZNF540-208ENST00000589857 CSRNP3Q8WYN3 585 aa16.59■□□□□ 0.25
ZNF540-208ENST00000589857 TNIKQ9UKE5 1360 aa16.59■□□□□ 0.25
ZNF540-208ENST00000589857 ABCA10Q8WWZ4 1543 aa16.59■□□□□ 0.25
ZNF540-208ENST00000589857 ZEB1P37275 1124 aaPredicted RBP16.55■□□□□ 0.24
ZNF540-208ENST00000589857 GOLGA3Q08378 1498 aa16.54■□□□□ 0.24
ZNF540-208ENST00000589857 PBRM1Q86U86 1689 aa16.54■□□□□ 0.24
ZNF540-208ENST00000589857 GRIN2AQ12879 1464 aa16.53■□□□□ 0.24
ZNF540-208ENST00000589857 NPM1P06748 294 aaKnown RBP eCLIP16.51■□□□□ 0.23
ZNF540-208ENST00000589857 ABCA5Q8WWZ7 1642 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms