RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 NISCHQ9Y2I1 1504 aa22.19■■□□□ 1.14
VPS25-202ENST00000589219 AEBP2Q6ZN18 517 aaPredicted RBP20.55■□□□□ 0.88
VPS25-202ENST00000589219 CCDC180Q9P1Z9 1646 aa19.94■□□□□ 0.78
VPS25-202ENST00000589219 ABCC9O60706 1549 aa19.81■□□□□ 0.76
VPS25-202ENST00000589219 CHIC1Q5VXU3 224 aa19.52■□□□□ 0.72
VPS25-202ENST00000589219 RB1CC1Q8TDY2 1594 aa18.95■□□□□ 0.62
VPS25-202ENST00000589219 NACADO15069 1562 aa18.83■□□□□ 0.6
VPS25-202ENST00000589219 DCAF8L2P0C7V8 631 aa18.72■□□□□ 0.59
VPS25-202ENST00000589219 MYO15BQ96JP2 1530 aa18.59■□□□□ 0.57
VPS25-202ENST00000589219 UNC13AQ9UPW8 1703 aa18.5■□□□□ 0.55
VPS25-202ENST00000589219 DNAJC5BQ9UF47 199 aa18.5■□□□□ 0.55
VPS25-202ENST00000589219 PABPN1Q86U42 306 aaKnown RBP eCLIP18.44■□□□□ 0.54
VPS25-202ENST00000589219 ZCCHC6Q5VYS8 1495 aaKnown RBP18.39■□□□□ 0.53
VPS25-202ENST00000589219 DCAF1Q9Y4B6 1507 aa18.36■□□□□ 0.53
VPS25-202ENST00000589219 BICRAQ9NZM4 1560 aa18.33■□□□□ 0.52
VPS25-202ENST00000589219 SHROOM4Q9ULL8 1493 aa18.17■□□□□ 0.5
VPS25-202ENST00000589219 SCRIBQ14160 1630 aa18.12■□□□□ 0.49
VPS25-202ENST00000589219 CC2D2AQ9P2K1 1620 aa17.93■□□□□ 0.46
VPS25-202ENST00000589219 EIF4G1Q04637 1599 aaKnown RBP17.9■□□□□ 0.46
VPS25-202ENST00000589219 CECR2Q9BXF3 1484 aa17.87■□□□□ 0.45
VPS25-202ENST00000589219 SENP3Q9H4L4 574 aaPredicted RBP17.45■□□□□ 0.38
VPS25-202ENST00000589219 NCAPD3P42695 1498 aa17.36■□□□□ 0.37
VPS25-202ENST00000589219 SUPT5HO00267 1087 aaKnown RBP17.31■□□□□ 0.36
VPS25-202ENST00000589219 SMARCA4P51532 1647 aa17.3■□□□□ 0.36
VPS25-202ENST00000589219 SMARCA2P51531 1590 aa17.3■□□□□ 0.36
VPS25-202ENST00000589219 ATAD2BQ9ULI0 1458 aa17.3■□□□□ 0.36
VPS25-202ENST00000589219 HMGXB3Q12766 1538 aa17.25■□□□□ 0.35
VPS25-202ENST00000589219 BAZ1AQ9NRL2 1556 aaPredicted RBP17.24■□□□□ 0.35
VPS25-202ENST00000589219 PHF23Q9BUL5 403 aaPredicted RBP17.24■□□□□ 0.35
VPS25-202ENST00000589219 ERCC6Q03468 1493 aa17.15■□□□□ 0.34
VPS25-202ENST00000589219 BAZ1BQ9UIG0 1483 aaKnown RBP17.15■□□□□ 0.34
VPS25-202ENST00000589219 PEG3Q9GZU2 1588 aa17.15■□□□□ 0.34
VPS25-202ENST00000589219 CUX2O14529 1486 aa17.12■□□□□ 0.33
VPS25-202ENST00000589219 MROH2BQ7Z745 1585 aa17.06■□□□□ 0.32
VPS25-202ENST00000589219 DNAJC5Q9H3Z4 198 aa17.02■□□□□ 0.32
VPS25-202ENST00000589219 NESP48681 1621 aa17.02■□□□□ 0.31
VPS25-202ENST00000589219 LAMC3Q9Y6N6 1575 aa16.98■□□□□ 0.31
VPS25-202ENST00000589219 RSF1Q96T23 1441 aaPredicted RBP16.96■□□□□ 0.3
VPS25-202ENST00000589219 PDS5BQ9NTI5 1447 aa16.88■□□□□ 0.29
VPS25-202ENST00000589219 WIZO95785 1651 aa16.88■□□□□ 0.29
VPS25-202ENST00000589219 THOC2Q8NI27 1593 aaKnown RBP16.86■□□□□ 0.29
VPS25-202ENST00000589219 KIF21AQ7Z4S6 1674 aa16.85■□□□□ 0.29
VPS25-202ENST00000589219 CADPSQ9ULU8 1353 aa16.83■□□□□ 0.28
VPS25-202ENST00000589219 MRC2Q9UBG0 1479 aa16.71■□□□□ 0.27
VPS25-202ENST00000589219 TOP2AP11388 1531 aaKnown RBP16.69■□□□□ 0.26
VPS25-202ENST00000589219 CEP164Q9UPV0 1460 aa16.67■□□□□ 0.26
VPS25-202ENST00000589219 WDR62O43379 1518 aa16.65■□□□□ 0.26
VPS25-202ENST00000589219 CFTRP13569 1480 aa16.64■□□□□ 0.25
VPS25-202ENST00000589219 FANCD2Q9BXW9 1451 aa16.63■□□□□ 0.25
VPS25-202ENST00000589219 PRDM2Q13029 1718 aa16.55■□□□□ 0.24
VPS25-202ENST00000589219 CCDC88BA6NC98 1476 aa16.48■□□□□ 0.23
VPS25-202ENST00000589219 URB2Q14146 1524 aaKnown RBP16.47■□□□□ 0.23
VPS25-202ENST00000589219 ABCC8Q09428 1581 aa16.35■□□□□ 0.21
VPS25-202ENST00000589219 OSCARQ8IYS5 282 aa16.34■□□□□ 0.21
VPS25-202ENST00000589219 IFT140Q96RY7 1462 aa16.33■□□□□ 0.2
VPS25-202ENST00000589219 TOPBP1Q92547 1522 aa16.32■□□□□ 0.2
VPS25-202ENST00000589219 FOXD1Q16676 465 aa16.3■□□□□ 0.2
VPS25-202ENST00000589219 TRIM41Q8WV44 630 aa16.3■□□□□ 0.2
VPS25-202ENST00000589219 DNMBPQ6XZF7 1577 aa16.28■□□□□ 0.2
VPS25-202ENST00000589219 ZNF608Q9ULD9 1512 aaPredicted RBP16.24■□□□□ 0.19
VPS25-202ENST00000589219 EIF4G3O43432 1585 aaKnown RBP16.19■□□□□ 0.18
VPS25-202ENST00000589219 TARBP1Q13395 1621 aaKnown RBP16.17■□□□□ 0.18
VPS25-202ENST00000589219 POLA1P09884 1462 aaPredicted RBP16.15■□□□□ 0.18
VPS25-202ENST00000589219 AQRO60306 1485 aaKnown RBP eCLIP16.12■□□□□ 0.172e-9■■■■□ 25.7
VPS25-202ENST00000589219 SOGA1O94964 1423 aa16.1■□□□□ 0.17
VPS25-202ENST00000589219 RIMBP3CA6NJZ7 1639 aa16.09■□□□□ 0.17
VPS25-202ENST00000589219 RIMBP3BA6NNM3 1639 aa16.09■□□□□ 0.17
VPS25-202ENST00000589219 RIMBP3Q9UFD9 1639 aa16.09■□□□□ 0.17
VPS25-202ENST00000589219 CHD1O14646 1710 aa16.08■□□□□ 0.17
VPS25-202ENST00000589219 LOC105371045A0A1W2PR82 267 aa16.08■□□□□ 0.16
VPS25-202ENST00000589219 WDR97A6NE52 1622 aa16.08■□□□□ 0.16
VPS25-202ENST00000589219 RAD54L2Q9Y4B4 1467 aa16.07■□□□□ 0.16
VPS25-202ENST00000589219 FGD5Q6ZNL6 1462 aa16.05■□□□□ 0.16
VPS25-202ENST00000589219 ARHGEF11O15085 1522 aa16.04■□□□□ 0.16
VPS25-202ENST00000589219 FBLN2P98095 1184 aa16.04■□□□□ 0.16
VPS25-202ENST00000589219 CUX1P39880 1505 aa16.04■□□□□ 0.16
VPS25-202ENST00000589219 TDRD9Q8NDG6 1382 aaKnown RBP16.03■□□□□ 0.16
VPS25-202ENST00000589219 EEA1Q15075 1411 aa16.02■□□□□ 0.15
VPS25-202ENST00000589219 WRNQ14191 1432 aaPredicted RBP eCLIP15.97■□□□□ 0.15
VPS25-202ENST00000589219 SNAPC4Q5SXM2 1469 aa15.97■□□□□ 0.15
VPS25-202ENST00000589219 MAGI1Q96QZ7 1491 aaPredicted RBP15.97■□□□□ 0.15
VPS25-202ENST00000589219 GRIN2BQ13224 1484 aa15.96■□□□□ 0.14
VPS25-202ENST00000589219 CHMP7Q8WUX9 453 aaPredicted RBP15.95■□□□□ 0.14
VPS25-202ENST00000589219 FAM9AQ8IZU1 332 aaPredicted RBP15.94■□□□□ 0.14
VPS25-202ENST00000589219 CYB5RLQ6IPT4 315 aa15.93■□□□□ 0.14
VPS25-202ENST00000589219 SYNJ1O43426 1573 aa15.92■□□□□ 0.14
VPS25-202ENST00000589219 PBRM1Q86U86 1689 aa15.91■□□□□ 0.14
VPS25-202ENST00000589219 GAPVD1Q14C86 1478 aa15.91■□□□□ 0.14
VPS25-202ENST00000589219 SYNJ2O15056 1496 aa15.9■□□□□ 0.14
VPS25-202ENST00000589219 ABCA10Q8WWZ4 1543 aa15.89■□□□□ 0.13
VPS25-202ENST00000589219 ARAP1Q96P48 1450 aa15.87■□□□□ 0.13
VPS25-202ENST00000589219 CLASP1Q7Z460 1538 aa15.87■□□□□ 0.13
VPS25-202ENST00000589219 ABCA5Q8WWZ7 1642 aa15.86■□□□□ 0.13
VPS25-202ENST00000589219 TOP2BQ02880 1626 aa15.83■□□□□ 0.13
VPS25-202ENST00000589219 BIVM-ERCC5R4GMW8 1640 aa15.83■□□□□ 0.13
VPS25-202ENST00000589219 KIF21BO75037 1637 aa15.78■□□□□ 0.12
VPS25-202ENST00000589219 GOLGA3Q08378 1498 aa15.78■□□□□ 0.12
VPS25-202ENST00000589219 PCGF6Q9BYE7 350 aa15.77■□□□□ 0.12
VPS25-202ENST00000589219 TRHP20396 242 aaPredicted RBP15.76■□□□□ 0.11
VPS25-202ENST00000589219 TRIM26Q12899 539 aaPredicted RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms