RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 NISCHQ9Y2I1 1504 aa31.55■■■□□ 2.64
LIG3-205ENST00000585941 CCDC180Q9P1Z9 1646 aa27.46■■□□□ 1.99
LIG3-205ENST00000585941 ZCCHC6Q5VYS8 1495 aaKnown RBP26.55■■□□□ 1.84
LIG3-205ENST00000585941 DCAF1Q9Y4B6 1507 aa26.16■■□□□ 1.78
LIG3-205ENST00000585941 DCAF8L2P0C7V8 631 aa25.88■■□□□ 1.73
LIG3-205ENST00000585941 SHROOM4Q9ULL8 1493 aa25.79■■□□□ 1.72
LIG3-205ENST00000585941 MYO15BQ96JP2 1530 aa25.77■■□□□ 1.72
LIG3-205ENST00000585941 ABCC9O60706 1549 aa25.61■■□□□ 1.69
LIG3-205ENST00000585941 NACADO15069 1562 aa25.5■■□□□ 1.67
LIG3-205ENST00000585941 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
LIG3-205ENST00000585941 SCRIBQ14160 1630 aa25.18■■□□□ 1.62
LIG3-205ENST00000585941 SUPT5HO00267 1087 aaKnown RBP24.97■■□□□ 1.59
LIG3-205ENST00000585941 UNC13AQ9UPW8 1703 aa24.68■■□□□ 1.54
LIG3-205ENST00000585941 RSF1Q96T23 1441 aaPredicted RBP24.54■■□□□ 1.52
LIG3-205ENST00000585941 CECR2Q9BXF3 1484 aa24.42■■□□□ 1.5
LIG3-205ENST00000585941 BICRAQ9NZM4 1560 aa24.38■■□□□ 1.49
LIG3-205ENST00000585941 BAZ1AQ9NRL2 1556 aaPredicted RBP24.37■■□□□ 1.49
LIG3-205ENST00000585941 MROH2BQ7Z745 1585 aa24.33■■□□□ 1.49
LIG3-205ENST00000585941 SMARCA4P51532 1647 aa24.2■■□□□ 1.46
LIG3-205ENST00000585941 WIZO95785 1651 aa24.16■■□□□ 1.46
LIG3-205ENST00000585941 PABPN1Q86U42 306 aaKnown RBP eCLIP24.16■■□□□ 1.46
LIG3-205ENST00000585941 CHIC1Q5VXU3 224 aa24.07■■□□□ 1.44
LIG3-205ENST00000585941 TOP2AP11388 1531 aaKnown RBP23.97■■□□□ 1.43
LIG3-205ENST00000585941 PEG3Q9GZU2 1588 aa23.93■■□□□ 1.42
LIG3-205ENST00000585941 SMARCA2P51531 1590 aa23.78■■□□□ 1.4
LIG3-205ENST00000585941 ATAD2BQ9ULI0 1458 aa23.73■■□□□ 1.39
LIG3-205ENST00000585941 CCDC88BA6NC98 1476 aa23.69■■□□□ 1.38
LIG3-205ENST00000585941 EIF4G1Q04637 1599 aaKnown RBP23.65■■□□□ 1.38
LIG3-205ENST00000585941 BAZ1BQ9UIG0 1483 aaKnown RBP23.62■■□□□ 1.37
LIG3-205ENST00000585941 TRIM41Q8WV44 630 aa23.53■■□□□ 1.36
LIG3-205ENST00000585941 HMGXB3Q12766 1538 aa23.52■■□□□ 1.35
LIG3-205ENST00000585941 NCAPD3P42695 1498 aa23.51■■□□□ 1.35
LIG3-205ENST00000585941 ABCC8Q09428 1581 aa23.23■■□□□ 1.31
LIG3-205ENST00000585941 CC2D2AQ9P2K1 1620 aa23.23■■□□□ 1.31
LIG3-205ENST00000585941 WRNQ14191 1432 aaPredicted RBP eCLIP23.12■■□□□ 1.29
LIG3-205ENST00000585941 LOC105371045A0A1W2PR82 267 aa23.09■■□□□ 1.29
LIG3-205ENST00000585941 CFTRP13569 1480 aa23.04■■□□□ 1.28
LIG3-205ENST00000585941 PRDM2Q13029 1718 aa23.02■■□□□ 1.28
LIG3-205ENST00000585941 FAM9AQ8IZU1 332 aaPredicted RBP23.01■■□□□ 1.27
LIG3-205ENST00000585941 EEA1Q15075 1411 aa23■■□□□ 1.27
LIG3-205ENST00000585941 SYNJ1O43426 1573 aa22.98■■□□□ 1.27
LIG3-205ENST00000585941 TOP2BQ02880 1626 aa22.92■■□□□ 1.26
LIG3-205ENST00000585941 CADPSQ9ULU8 1353 aa22.9■■□□□ 1.26
LIG3-205ENST00000585941 BIVM-ERCC5R4GMW8 1640 aa22.9■■□□□ 1.26
LIG3-205ENST00000585941 SOGA1O94964 1423 aa22.84■■□□□ 1.25
LIG3-205ENST00000585941 CSRNP3Q8WYN3 585 aa22.77■■□□□ 1.24
LIG3-205ENST00000585941 CUX1P39880 1505 aa22.75■■□□□ 1.23
LIG3-205ENST00000585941 RUSC2Q8N2Y8 1516 aa22.72■■□□□ 1.23
LIG3-205ENST00000585941 LAMC3Q9Y6N6 1575 aa22.69■■□□□ 1.22
LIG3-205ENST00000585941 FANCD2Q9BXW9 1451 aa22.65■■□□□ 1.22
LIG3-205ENST00000585941 KIF21BO75037 1637 aa22.65■■□□□ 1.22
LIG3-205ENST00000585941 GOLGA3Q08378 1498 aa22.63■■□□□ 1.21
LIG3-205ENST00000585941 CEP164Q9UPV0 1460 aa22.63■■□□□ 1.21
LIG3-205ENST00000585941 EHMT2Q96KQ7 1210 aa22.62■■□□□ 1.21
LIG3-205ENST00000585941 TNIKQ9UKE5 1360 aa22.61■■□□□ 1.21
LIG3-205ENST00000585941 NESP48681 1621 aa22.55■■□□□ 1.2
LIG3-205ENST00000585941 KIF27Q86VH2 1401 aa22.54■■□□□ 1.2
LIG3-205ENST00000585941 DNMBPQ6XZF7 1577 aa22.52■■□□□ 1.2
LIG3-205ENST00000585941 PDS5BQ9NTI5 1447 aa22.5■■□□□ 1.19
LIG3-205ENST00000585941 CEP162Q5TB80 1403 aa22.48■■□□□ 1.19
LIG3-205ENST00000585941 UBTFP17480 764 aaKnown RBP22.48■■□□□ 1.19
LIG3-205ENST00000585941 FGD5Q6ZNL6 1462 aa22.47■■□□□ 1.19
LIG3-205ENST00000585941 ERICH3Q5RHP9 1530 aa22.47■■□□□ 1.19
LIG3-205ENST00000585941 TOPBP1Q92547 1522 aa22.43■■□□□ 1.18
LIG3-205ENST00000585941 PRXQ9BXM0 1461 aa22.42■■□□□ 1.18
LIG3-205ENST00000585941 DNAJC5BQ9UF47 199 aa22.4■■□□□ 1.18
LIG3-205ENST00000585941 RAPGEF2Q9Y4G8 1499 aa22.39■■□□□ 1.17
LIG3-205ENST00000585941 CUX2O14529 1486 aa22.38■■□□□ 1.17
LIG3-205ENST00000585941 TRIM26Q12899 539 aaPredicted RBP22.36■■□□□ 1.17
LIG3-205ENST00000585941 KIF21AQ7Z4S6 1674 aa22.34■■□□□ 1.17
LIG3-205ENST00000585941 PCGF6Q9BYE7 350 aa22.33■■□□□ 1.17
LIG3-205ENST00000585941 POLA1P09884 1462 aaPredicted RBP22.33■■□□□ 1.17
LIG3-205ENST00000585941 URB2Q14146 1524 aaKnown RBP22.33■■□□□ 1.16
LIG3-205ENST00000585941 ABCA10Q8WWZ4 1543 aa22.31■■□□□ 1.16
LIG3-205ENST00000585941 IGF1RP08069 1367 aa22.26■■□□□ 1.15
LIG3-205ENST00000585941 CLIP1P30622 1438 aa22.26■■□□□ 1.15
LIG3-205ENST00000585941 WDR97A6NE52 1622 aa22.22■■□□□ 1.15
LIG3-205ENST00000585941 RAD54L2Q9Y4B4 1467 aa22.21■■□□□ 1.15
LIG3-205ENST00000585941 CARMIL1Q5VZK9 1371 aa22.18■■□□□ 1.14
LIG3-205ENST00000585941 MRC2Q9UBG0 1479 aa22.17■■□□□ 1.14
LIG3-205ENST00000585941 CUL7Q14999 1698 aa22.15■■□□□ 1.14
LIG3-205ENST00000585941 VPS8Q8N3P4 1428 aa22.11■■□□□ 1.13
LIG3-205ENST00000585941 ABCA5Q8WWZ7 1642 aa22.11■■□□□ 1.13
LIG3-205ENST00000585941 TARBP1Q13395 1621 aaKnown RBP22.09■■□□□ 1.13
LIG3-205ENST00000585941 WDR62O43379 1518 aa22.05■■□□□ 1.12
LIG3-205ENST00000585941 GAPVD1Q14C86 1478 aa22.04■■□□□ 1.12
LIG3-205ENST00000585941 TDRD9Q8NDG6 1382 aaKnown RBP21.99■■□□□ 1.11
LIG3-205ENST00000585941 ERCC6Q03468 1493 aa21.98■■□□□ 1.11
LIG3-205ENST00000585941 ARAP1Q96P48 1450 aa21.98■■□□□ 1.11
LIG3-205ENST00000585941 IFT140Q96RY7 1462 aa21.96■■□□□ 1.11
LIG3-205ENST00000585941 HRCP23327 699 aa21.95■■□□□ 1.1
LIG3-205ENST00000585941 PPARGC1BQ86YN6 1023 aaKnown RBP21.95■■□□□ 1.1
LIG3-205ENST00000585941 RANGAP1P46060 587 aaPredicted RBP21.94■■□□□ 1.1
LIG3-205ENST00000585941 APLP2Q06481 763 aa21.94■■□□□ 1.1
LIG3-205ENST00000585941 ARHGAP35Q9NRY4 1499 aa21.94■■□□□ 1.1
LIG3-205ENST00000585941 CTTNBP2Q8WZ74 1663 aa21.93■■□□□ 1.1
LIG3-205ENST00000585941 PBRM1Q86U86 1689 aa21.92■■□□□ 1.1
LIG3-205ENST00000585941 THOC2Q8NI27 1593 aaKnown RBP21.91■■□□□ 1.1
LIG3-205ENST00000585941 EFCAB5A4FU69 1503 aa21.85■■□□□ 1.09
LIG3-205ENST00000585941 GRIN2BQ13224 1484 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms