RNA–Protein interactions for RNA: ENST00000578411.1

SSH2-207, Transcript of slingshot protein phosphatase 2, humanhuman

TSL 2

Gene SSH2, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH2-207ENST00000578411 NISCHQ9Y2I1 1504 aa31.12■■■□□ 2.57
SSH2-207ENST00000578411 ABCC9O60706 1549 aa29.02■■■□□ 2.24
SSH2-207ENST00000578411 CCDC180Q9P1Z9 1646 aa28.38■■■□□ 2.13
SSH2-207ENST00000578411 DNAJC5BQ9UF47 199 aa27.77■■■□□ 2.04
SSH2-207ENST00000578411 AEBP2Q6ZN18 517 aaPredicted RBP27.71■■■□□ 2.03
SSH2-207ENST00000578411 RB1CC1Q8TDY2 1594 aa27.34■■□□□ 1.97
SSH2-207ENST00000578411 NACADO15069 1562 aa26.94■■□□□ 1.9
SSH2-207ENST00000578411 PABPN1Q86U42 306 aaKnown RBP eCLIP26.8■■□□□ 1.88
SSH2-207ENST00000578411 UNC13AQ9UPW8 1703 aa26.76■■□□□ 1.87
SSH2-207ENST00000578411 BICRAQ9NZM4 1560 aa26.55■■□□□ 1.84
SSH2-207ENST00000578411 DCAF8L2P0C7V8 631 aa26.44■■□□□ 1.82
SSH2-207ENST00000578411 MYO15BQ96JP2 1530 aa26.3■■□□□ 1.8
SSH2-207ENST00000578411 CECR2Q9BXF3 1484 aa26.23■■□□□ 1.79
SSH2-207ENST00000578411 CC2D2AQ9P2K1 1620 aa26.21■■□□□ 1.79
SSH2-207ENST00000578411 SHROOM4Q9ULL8 1493 aa26.17■■□□□ 1.78
SSH2-207ENST00000578411 CHIC1Q5VXU3 224 aa26.17■■□□□ 1.78
SSH2-207ENST00000578411 DNAJC5Q9H3Z4 198 aa26.09■■□□□ 1.77
SSH2-207ENST00000578411 EIF4G1Q04637 1599 aaKnown RBP25.98■■□□□ 1.75
SSH2-207ENST00000578411 SCRIBQ14160 1630 aa25.78■■□□□ 1.72
SSH2-207ENST00000578411 DCAF1Q9Y4B6 1507 aa25.68■■□□□ 1.7
SSH2-207ENST00000578411 ZCCHC6Q5VYS8 1495 aaKnown RBP25.68■■□□□ 1.7
SSH2-207ENST00000578411 CUX2O14529 1486 aa25.37■■□□□ 1.65
SSH2-207ENST00000578411 ERCC6Q03468 1493 aa25.15■■□□□ 1.62
SSH2-207ENST00000578411 NCAPD3P42695 1498 aa24.83■■□□□ 1.56
SSH2-207ENST00000578411 THOC2Q8NI27 1593 aaKnown RBP24.71■■□□□ 1.55
SSH2-207ENST00000578411 NESP48681 1621 aa24.71■■□□□ 1.55
SSH2-207ENST00000578411 HMGXB3Q12766 1538 aa24.66■■□□□ 1.54
SSH2-207ENST00000578411 TRIM41Q8WV44 630 aa24.66■■□□□ 1.54
SSH2-207ENST00000578411 ATAD2BQ9ULI0 1458 aa24.65■■□□□ 1.54
SSH2-207ENST00000578411 SMARCA2P51531 1590 aa24.59■■□□□ 1.53
SSH2-207ENST00000578411 SMARCA4P51532 1647 aa24.5■■□□□ 1.51
SSH2-207ENST00000578411 LAMC3Q9Y6N6 1575 aa24.46■■□□□ 1.51
SSH2-207ENST00000578411 KIF21AQ7Z4S6 1674 aa24.45■■□□□ 1.5
SSH2-207ENST00000578411 BAZ1BQ9UIG0 1483 aaKnown RBP24.41■■□□□ 1.5
SSH2-207ENST00000578411 PDS5BQ9NTI5 1447 aa24.27■■□□□ 1.48
SSH2-207ENST00000578411 PEG3Q9GZU2 1588 aa24.26■■□□□ 1.47
SSH2-207ENST00000578411 BAZ1AQ9NRL2 1556 aaPredicted RBP24.25■■□□□ 1.47
SSH2-207ENST00000578411 MRC2Q9UBG0 1479 aa24.18■■□□□ 1.46
SSH2-207ENST00000578411 WDR62O43379 1518 aa24.17■■□□□ 1.46
SSH2-207ENST00000578411 CADPSQ9ULU8 1353 aa24.01■■□□□ 1.43
SSH2-207ENST00000578411 MROH2BQ7Z745 1585 aa23.97■■□□□ 1.43
SSH2-207ENST00000578411 OSCARQ8IYS5 282 aa23.94■■□□□ 1.42
SSH2-207ENST00000578411 CEP164Q9UPV0 1460 aa23.93■■□□□ 1.42
SSH2-207ENST00000578411 RIMBP3CA6NJZ7 1639 aa23.88■■□□□ 1.41
SSH2-207ENST00000578411 RIMBP3BA6NNM3 1639 aa23.88■■□□□ 1.41
SSH2-207ENST00000578411 RIMBP3Q9UFD9 1639 aa23.88■■□□□ 1.41
SSH2-207ENST00000578411 FANCD2Q9BXW9 1451 aa23.8■■□□□ 1.4
SSH2-207ENST00000578411 ARHGEF11O15085 1522 aa23.7■■□□□ 1.38
SSH2-207ENST00000578411 SENP3Q9H4L4 574 aaPredicted RBP23.7■■□□□ 1.38
SSH2-207ENST00000578411 WIZO95785 1651 aa23.67■■□□□ 1.38
SSH2-207ENST00000578411 URB2Q14146 1524 aaKnown RBP23.66■■□□□ 1.38
SSH2-207ENST00000578411 CFTRP13569 1480 aa23.62■■□□□ 1.37
SSH2-207ENST00000578411 ZNF608Q9ULD9 1512 aaPredicted RBP23.49■■□□□ 1.35
SSH2-207ENST00000578411 PRDM2Q13029 1718 aa23.45■■□□□ 1.34
SSH2-207ENST00000578411 IFT140Q96RY7 1462 aa23.45■■□□□ 1.34
SSH2-207ENST00000578411 TRHP20396 242 aaPredicted RBP23.43■■□□□ 1.34
SSH2-207ENST00000578411 CYB5RLQ6IPT4 315 aa23.42■■□□□ 1.34
SSH2-207ENST00000578411 ARAP1Q96P48 1450 aa23.42■■□□□ 1.34
SSH2-207ENST00000578411 EIF4G3O43432 1585 aaKnown RBP23.4■■□□□ 1.34
SSH2-207ENST00000578411 CHD1O14646 1710 aa23.37■■□□□ 1.33
SSH2-207ENST00000578411 TOP2AP11388 1531 aaKnown RBP23.35■■□□□ 1.33
SSH2-207ENST00000578411 PHF23Q9BUL5 403 aaPredicted RBP23.34■■□□□ 1.33
SSH2-207ENST00000578411 RSF1Q96T23 1441 aaPredicted RBP23.28■■□□□ 1.32
SSH2-207ENST00000578411 TOPBP1Q92547 1522 aa23.27■■□□□ 1.32
SSH2-207ENST00000578411 DNMBPQ6XZF7 1577 aa23.15■■□□□ 1.3
SSH2-207ENST00000578411 TARBP1Q13395 1621 aaKnown RBP23.15■■□□□ 1.3
SSH2-207ENST00000578411 ABCC8Q09428 1581 aa23.14■■□□□ 1.29
SSH2-207ENST00000578411 AQRO60306 1485 aaKnown RBP eCLIP23.12■■□□□ 1.29
SSH2-207ENST00000578411 FBLN2P98095 1184 aa23.07■■□□□ 1.28
SSH2-207ENST00000578411 CLASP1Q7Z460 1538 aa23.06■■□□□ 1.28
SSH2-207ENST00000578411 CCDC88BA6NC98 1476 aa23■■□□□ 1.27
SSH2-207ENST00000578411 POLA1P09884 1462 aaPredicted RBP22.98■■□□□ 1.27
SSH2-207ENST00000578411 SYNJ1O43426 1573 aa22.97■■□□□ 1.27
SSH2-207ENST00000578411 SNAPC4Q5SXM2 1469 aa22.95■■□□□ 1.26
SSH2-207ENST00000578411 WDR97A6NE52 1622 aa22.9■■□□□ 1.26
SSH2-207ENST00000578411 RAD54L2Q9Y4B4 1467 aa22.87■■□□□ 1.25
SSH2-207ENST00000578411 MAGI1Q96QZ7 1491 aaPredicted RBP22.85■■□□□ 1.25
SSH2-207ENST00000578411 TDRD9Q8NDG6 1382 aaKnown RBP22.84■■□□□ 1.25
SSH2-207ENST00000578411 GAPVD1Q14C86 1478 aa22.81■■□□□ 1.24
SSH2-207ENST00000578411 SOGA1O94964 1423 aa22.79■■□□□ 1.24
SSH2-207ENST00000578411 CHMP7Q8WUX9 453 aaPredicted RBP22.78■■□□□ 1.24
SSH2-207ENST00000578411 SYNJ2O15056 1496 aa22.77■■□□□ 1.24
SSH2-207ENST00000578411 GRIN2BQ13224 1484 aa22.74■■□□□ 1.23
SSH2-207ENST00000578411 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
SSH2-207ENST00000578411 PBRM1Q86U86 1689 aa22.7■■□□□ 1.22
SSH2-207ENST00000578411 ERCC6L2Q5T890 1561 aa22.61■■□□□ 1.21
SSH2-207ENST00000578411 KIF13AQ9H1H9 1805 aa22.59■■□□□ 1.21
SSH2-207ENST00000578411 CUX1P39880 1505 aa22.59■■□□□ 1.21
SSH2-207ENST00000578411 ABCA5Q8WWZ7 1642 aa22.53■■□□□ 1.2
SSH2-207ENST00000578411 CEP170Q5SW79 1584 aa22.52■■□□□ 1.2
SSH2-207ENST00000578411 GRIN2AQ12879 1464 aa22.47■■□□□ 1.19
SSH2-207ENST00000578411 SHROOM2Q13796 1616 aa22.46■■□□□ 1.19
SSH2-207ENST00000578411 ADAMTS12P58397 1594 aa22.43■■□□□ 1.18
SSH2-207ENST00000578411 ILDR1Q86SU0 546 aaPredicted RBP22.42■■□□□ 1.18
SSH2-207ENST00000578411 ABCA10Q8WWZ4 1543 aa22.41■■□□□ 1.18
SSH2-207ENST00000578411 NUP160Q12769 1436 aa22.41■■□□□ 1.18
SSH2-207ENST00000578411 ABCC10Q5T3U5 1492 aa22.31■■□□□ 1.16
SSH2-207ENST00000578411 KDM6BO15054 1643 aa22.31■■□□□ 1.16
SSH2-207ENST00000578411 DIP2BQ9P265 1576 aa22.3■■□□□ 1.16
SSH2-207ENST00000578411 KDM4FA0A1W2PPD8 638 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms