RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 NISCHQ9Y2I1 1504 aa24.15■■□□□ 1.46
CIITA-207ENST00000571545 CCDC180Q9P1Z9 1646 aa21.72■■□□□ 1.07
CIITA-207ENST00000571545 ABCC9O60706 1549 aa21.39■■□□□ 1.01
CIITA-207ENST00000571545 AEBP2Q6ZN18 517 aaPredicted RBP21.1■□□□□ 0.97
CIITA-207ENST00000571545 RB1CC1Q8TDY2 1594 aa20.56■□□□□ 0.88
CIITA-207ENST00000571545 NACADO15069 1562 aa20.46■□□□□ 0.87
CIITA-207ENST00000571545 MYO15BQ96JP2 1530 aa20.27■□□□□ 0.84
CIITA-207ENST00000571545 CHIC1Q5VXU3 224 aa20.27■□□□□ 0.84
CIITA-207ENST00000571545 DCAF8L2P0C7V8 631 aa20.19■□□□□ 0.82
CIITA-207ENST00000571545 ZCCHC6Q5VYS8 1495 aaKnown RBP20.07■□□□□ 0.8
CIITA-207ENST00000571545 DCAF1Q9Y4B6 1507 aa20.04■□□□□ 0.8
CIITA-207ENST00000571545 UNC13AQ9UPW8 1703 aa20.04■□□□□ 0.8
CIITA-207ENST00000571545 PABPN1Q86U42 306 aaKnown RBP eCLIP19.86■□□□□ 0.77
CIITA-207ENST00000571545 BICRAQ9NZM4 1560 aa19.85■□□□□ 0.77
CIITA-207ENST00000571545 SHROOM4Q9ULL8 1493 aa19.81■□□□□ 0.76
CIITA-207ENST00000571545 DNAJC5BQ9UF47 199 aa19.77■□□□□ 0.76
CIITA-207ENST00000571545 SCRIBQ14160 1630 aa19.68■□□□□ 0.74
CIITA-207ENST00000571545 EIF4G1Q04637 1599 aaKnown RBP19.4■□□□□ 0.7
CIITA-207ENST00000571545 CC2D2AQ9P2K1 1620 aa19.38■□□□□ 0.69
CIITA-207ENST00000571545 CECR2Q9BXF3 1484 aa19.29■□□□□ 0.68
CIITA-207ENST00000571545 SMARCA4P51532 1647 aa18.83■□□□□ 0.61
CIITA-207ENST00000571545 NCAPD3P42695 1498 aa18.83■□□□□ 0.6
CIITA-207ENST00000571545 SMARCA2P51531 1590 aa18.82■□□□□ 0.6
CIITA-207ENST00000571545 BAZ1AQ9NRL2 1556 aaPredicted RBP18.8■□□□□ 0.6
CIITA-207ENST00000571545 HMGXB3Q12766 1538 aa18.77■□□□□ 0.6
CIITA-207ENST00000571545 ATAD2BQ9ULI0 1458 aa18.77■□□□□ 0.59
CIITA-207ENST00000571545 PEG3Q9GZU2 1588 aa18.68■□□□□ 0.58
CIITA-207ENST00000571545 BAZ1BQ9UIG0 1483 aaKnown RBP18.65■□□□□ 0.58
CIITA-207ENST00000571545 MROH2BQ7Z745 1585 aa18.55■□□□□ 0.56
CIITA-207ENST00000571545 ERCC6Q03468 1493 aa18.55■□□□□ 0.56
CIITA-207ENST00000571545 CUX2O14529 1486 aa18.5■□□□□ 0.55
CIITA-207ENST00000571545 LAMC3Q9Y6N6 1575 aa18.44■□□□□ 0.54
CIITA-207ENST00000571545 NESP48681 1621 aa18.38■□□□□ 0.53
CIITA-207ENST00000571545 WIZO95785 1651 aa18.35■□□□□ 0.53
CIITA-207ENST00000571545 PDS5BQ9NTI5 1447 aa18.31■□□□□ 0.52
CIITA-207ENST00000571545 THOC2Q8NI27 1593 aaKnown RBP18.27■□□□□ 0.52
CIITA-207ENST00000571545 CADPSQ9ULU8 1353 aa18.25■□□□□ 0.51
CIITA-207ENST00000571545 KIF21AQ7Z4S6 1674 aa18.25■□□□□ 0.51
CIITA-207ENST00000571545 RSF1Q96T23 1441 aaPredicted RBP18.23■□□□□ 0.51
CIITA-207ENST00000571545 TOP2AP11388 1531 aaKnown RBP18.21■□□□□ 0.51
CIITA-207ENST00000571545 DNAJC5Q9H3Z4 198 aa18.18■□□□□ 0.5
CIITA-207ENST00000571545 MRC2Q9UBG0 1479 aa18.13■□□□□ 0.49
CIITA-207ENST00000571545 CFTRP13569 1480 aa18.09■□□□□ 0.49
CIITA-207ENST00000571545 CEP164Q9UPV0 1460 aa18.09■□□□□ 0.49
CIITA-207ENST00000571545 WDR62O43379 1518 aa18.08■□□□□ 0.49
CIITA-207ENST00000571545 FANCD2Q9BXW9 1451 aa18.05■□□□□ 0.48
CIITA-207ENST00000571545 PRDM2Q13029 1718 aa18.03■□□□□ 0.48
CIITA-207ENST00000571545 SENP3Q9H4L4 574 aaPredicted RBP17.99■□□□□ 0.47
CIITA-207ENST00000571545 CCDC88BA6NC98 1476 aa17.91■□□□□ 0.46
CIITA-207ENST00000571545 URB2Q14146 1524 aaKnown RBP17.85■□□□□ 0.45
CIITA-207ENST00000571545 ABCC8Q09428 1581 aa17.79■□□□□ 0.44
CIITA-207ENST00000571545 PHF23Q9BUL5 403 aaPredicted RBP17.78■□□□□ 0.44
CIITA-207ENST00000571545 IFT140Q96RY7 1462 aa17.73■□□□□ 0.43
CIITA-207ENST00000571545 DNMBPQ6XZF7 1577 aa17.72■□□□□ 0.43
CIITA-207ENST00000571545 TOPBP1Q92547 1522 aa17.72■□□□□ 0.43
CIITA-207ENST00000571545 OSCARQ8IYS5 282 aa17.6■□□□□ 0.41
CIITA-207ENST00000571545 EIF4G3O43432 1585 aaKnown RBP17.58■□□□□ 0.41
CIITA-207ENST00000571545 ZNF608Q9ULD9 1512 aaPredicted RBP17.57■□□□□ 0.4
CIITA-207ENST00000571545 TARBP1Q13395 1621 aaKnown RBP17.55■□□□□ 0.4
CIITA-207ENST00000571545 POLA1P09884 1462 aaPredicted RBP17.54■□□□□ 0.4
CIITA-207ENST00000571545 WDR97A6NE52 1622 aa17.54■□□□□ 0.4
CIITA-207ENST00000571545 SUPT5HO00267 1087 aaKnown RBP17.47■□□□□ 0.39
CIITA-207ENST00000571545 SOGA1O94964 1423 aa17.46■□□□□ 0.39
CIITA-207ENST00000571545 FGD5Q6ZNL6 1462 aa17.45■□□□□ 0.38
CIITA-207ENST00000571545 CUX1P39880 1505 aa17.45■□□□□ 0.38
CIITA-207ENST00000571545 AQRO60306 1485 aaKnown RBP eCLIP17.43■□□□□ 0.38
CIITA-207ENST00000571545 CHD1O14646 1710 aa17.41■□□□□ 0.38
CIITA-207ENST00000571545 RAD54L2Q9Y4B4 1467 aa17.41■□□□□ 0.38
CIITA-207ENST00000571545 TRIM41Q8WV44 630 aa17.4■□□□□ 0.38
CIITA-207ENST00000571545 RIMBP3CA6NJZ7 1639 aa17.36■□□□□ 0.37
CIITA-207ENST00000571545 RIMBP3BA6NNM3 1639 aa17.36■□□□□ 0.37
CIITA-207ENST00000571545 RIMBP3Q9UFD9 1639 aa17.36■□□□□ 0.37
CIITA-207ENST00000571545 MAGI1Q96QZ7 1491 aaPredicted RBP17.36■□□□□ 0.37
CIITA-207ENST00000571545 TDRD9Q8NDG6 1382 aaKnown RBP17.35■□□□□ 0.37
CIITA-207ENST00000571545 GRIN2BQ13224 1484 aa17.34■□□□□ 0.37
CIITA-207ENST00000571545 ARHGEF11O15085 1522 aa17.33■□□□□ 0.37
CIITA-207ENST00000571545 SNAPC4Q5SXM2 1469 aa17.32■□□□□ 0.36
CIITA-207ENST00000571545 ABCA10Q8WWZ4 1543 aa17.31■□□□□ 0.36
CIITA-207ENST00000571545 PBRM1Q86U86 1689 aa17.3■□□□□ 0.36
CIITA-207ENST00000571545 FBLN2P98095 1184 aa17.29■□□□□ 0.36
CIITA-207ENST00000571545 BIVM-ERCC5R4GMW8 1640 aa17.29■□□□□ 0.36
CIITA-207ENST00000571545 SYNJ1O43426 1573 aa17.28■□□□□ 0.36
CIITA-207ENST00000571545 GAPVD1Q14C86 1478 aa17.28■□□□□ 0.36
CIITA-207ENST00000571545 TOP2BQ02880 1626 aa17.28■□□□□ 0.36
CIITA-207ENST00000571545 ABCA5Q8WWZ7 1642 aa17.27■□□□□ 0.36
CIITA-207ENST00000571545 WRNQ14191 1432 aaPredicted RBP eCLIP17.27■□□□□ 0.35
CIITA-207ENST00000571545 SYNJ2O15056 1496 aa17.26■□□□□ 0.35
CIITA-207ENST00000571545 CHMP7Q8WUX9 453 aaPredicted RBP17.24■□□□□ 0.35
CIITA-207ENST00000571545 CLASP1Q7Z460 1538 aa17.21■□□□□ 0.35
CIITA-207ENST00000571545 ARAP1Q96P48 1450 aa17.14■□□□□ 0.33
CIITA-207ENST00000571545 ADAMTS12P58397 1594 aa17.13■□□□□ 0.33
CIITA-207ENST00000571545 ERICH3Q5RHP9 1530 aa17.12■□□□□ 0.33
CIITA-207ENST00000571545 CYB5RLQ6IPT4 315 aa17.11■□□□□ 0.33
CIITA-207ENST00000571545 GRIN2AQ12879 1464 aa17.1■□□□□ 0.33
CIITA-207ENST00000571545 FHAD1B1AJZ9 1412 aa17.09■□□□□ 0.33
CIITA-207ENST00000571545 NUP160Q12769 1436 aa17.04■□□□□ 0.32
CIITA-207ENST00000571545 CEP170Q5SW79 1584 aa17■□□□□ 0.31
CIITA-207ENST00000571545 SHROOM2Q13796 1616 aa16.96■□□□□ 0.31
CIITA-207ENST00000571545 KIF27Q86VH2 1401 aa16.95■□□□□ 0.3
CIITA-207ENST00000571545 CUL7Q14999 1698 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms