RNA–Protein interactions for RNA: ENST00000568993.5

SNX20-204, Transcript of sorting nexin 20, humanhuman

TSL 1 (best)

Gene SNX20, Length 2,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX20-204ENST00000568993 NISCHQ9Y2I1 1504 aa34.68■■■■□ 3.14
SNX20-204ENST00000568993 CCDC180Q9P1Z9 1646 aa30.11■■■□□ 2.41
SNX20-204ENST00000568993 ZCCHC6Q5VYS8 1495 aaKnown RBP29.19■■■□□ 2.26
SNX20-204ENST00000568993 DCAF1Q9Y4B6 1507 aa28.72■■■□□ 2.19
SNX20-204ENST00000568993 DCAF8L2P0C7V8 631 aa28.45■■■□□ 2.15
SNX20-204ENST00000568993 SHROOM4Q9ULL8 1493 aa28.38■■■□□ 2.13
SNX20-204ENST00000568993 MYO15BQ96JP2 1530 aa28.28■■■□□ 2.12
SNX20-204ENST00000568993 ABCC9O60706 1549 aa28.16■■■□□ 2.1
SNX20-204ENST00000568993 NACADO15069 1562 aa27.98■■■□□ 2.07
SNX20-204ENST00000568993 SCRIBQ14160 1630 aa27.67■■■□□ 2.02
SNX20-204ENST00000568993 RB1CC1Q8TDY2 1594 aa27.66■■■□□ 2.02
SNX20-204ENST00000568993 SUPT5HO00267 1087 aaKnown RBP27.47■■□□□ 1.99
SNX20-204ENST00000568993 UNC13AQ9UPW8 1703 aa27.12■■□□□ 1.93
SNX20-204ENST00000568993 RSF1Q96T23 1441 aaPredicted RBP27.01■■□□□ 1.91
SNX20-204ENST00000568993 CECR2Q9BXF3 1484 aa26.9■■□□□ 1.9
SNX20-204ENST00000568993 BICRAQ9NZM4 1560 aa26.84■■□□□ 1.89
SNX20-204ENST00000568993 MROH2BQ7Z745 1585 aa26.79■■□□□ 1.88
SNX20-204ENST00000568993 BAZ1AQ9NRL2 1556 aaPredicted RBP26.74■■□□□ 1.87
SNX20-204ENST00000568993 PABPN1Q86U42 306 aaKnown RBP eCLIP26.61■■□□□ 1.85
SNX20-204ENST00000568993 SMARCA4P51532 1647 aa26.58■■□□□ 1.85
SNX20-204ENST00000568993 WIZO95785 1651 aa26.57■■□□□ 1.84
SNX20-204ENST00000568993 CHIC1Q5VXU3 224 aa26.51■■□□□ 1.83
SNX20-204ENST00000568993 TOP2AP11388 1531 aaKnown RBP26.32■■□□□ 1.8
SNX20-204ENST00000568993 PEG3Q9GZU2 1588 aa26.3■■□□□ 1.8
SNX20-204ENST00000568993 SMARCA2P51531 1590 aa26.09■■□□□ 1.77
SNX20-204ENST00000568993 ATAD2BQ9ULI0 1458 aa26.09■■□□□ 1.77
SNX20-204ENST00000568993 CCDC88BA6NC98 1476 aa26.06■■□□□ 1.76
SNX20-204ENST00000568993 EIF4G1Q04637 1599 aaKnown RBP26■■□□□ 1.75
SNX20-204ENST00000568993 BAZ1BQ9UIG0 1483 aaKnown RBP25.93■■□□□ 1.74
SNX20-204ENST00000568993 NCAPD3P42695 1498 aa25.85■■□□□ 1.73
SNX20-204ENST00000568993 TRIM41Q8WV44 630 aa25.84■■□□□ 1.73
SNX20-204ENST00000568993 HMGXB3Q12766 1538 aa25.82■■□□□ 1.72
SNX20-204ENST00000568993 ABCC8Q09428 1581 aa25.56■■□□□ 1.68
SNX20-204ENST00000568993 CC2D2AQ9P2K1 1620 aa25.52■■□□□ 1.68
SNX20-204ENST00000568993 LOC105371045A0A1W2PR82 267 aa25.47■■□□□ 1.67
SNX20-204ENST00000568993 WRNQ14191 1432 aaPredicted RBP eCLIP25.4■■□□□ 1.66
SNX20-204ENST00000568993 CFTRP13569 1480 aa25.34■■□□□ 1.65
SNX20-204ENST00000568993 FAM9AQ8IZU1 332 aaPredicted RBP25.32■■□□□ 1.64
SNX20-204ENST00000568993 SYNJ1O43426 1573 aa25.28■■□□□ 1.64
SNX20-204ENST00000568993 EEA1Q15075 1411 aa25.21■■□□□ 1.63
SNX20-204ENST00000568993 PRDM2Q13029 1718 aa25.21■■□□□ 1.63
SNX20-204ENST00000568993 CADPSQ9ULU8 1353 aa25.18■■□□□ 1.62
SNX20-204ENST00000568993 TOP2BQ02880 1626 aa25.18■■□□□ 1.62
SNX20-204ENST00000568993 SOGA1O94964 1423 aa25.16■■□□□ 1.62
SNX20-204ENST00000568993 BIVM-ERCC5R4GMW8 1640 aa25.15■■□□□ 1.62
SNX20-204ENST00000568993 RUSC2Q8N2Y8 1516 aa25.05■■□□□ 1.6
SNX20-204ENST00000568993 CSRNP3Q8WYN3 585 aa25.03■■□□□ 1.6
SNX20-204ENST00000568993 CUX1P39880 1505 aa25.03■■□□□ 1.6
SNX20-204ENST00000568993 EHMT2Q96KQ7 1210 aa24.9■■□□□ 1.58
SNX20-204ENST00000568993 LAMC3Q9Y6N6 1575 aa24.89■■□□□ 1.58
SNX20-204ENST00000568993 FANCD2Q9BXW9 1451 aa24.88■■□□□ 1.57
SNX20-204ENST00000568993 KIF21BO75037 1637 aa24.85■■□□□ 1.57
SNX20-204ENST00000568993 TNIKQ9UKE5 1360 aa24.85■■□□□ 1.57
SNX20-204ENST00000568993 GOLGA3Q08378 1498 aa24.84■■□□□ 1.57
SNX20-204ENST00000568993 NESP48681 1621 aa24.83■■□□□ 1.57
SNX20-204ENST00000568993 CEP164Q9UPV0 1460 aa24.82■■□□□ 1.56
SNX20-204ENST00000568993 DNAJC5BQ9UF47 199 aa24.79■■□□□ 1.56
SNX20-204ENST00000568993 KIF27Q86VH2 1401 aa24.73■■□□□ 1.55
SNX20-204ENST00000568993 DNMBPQ6XZF7 1577 aa24.72■■□□□ 1.55
SNX20-204ENST00000568993 FGD5Q6ZNL6 1462 aa24.7■■□□□ 1.54
SNX20-204ENST00000568993 CEP162Q5TB80 1403 aa24.7■■□□□ 1.54
SNX20-204ENST00000568993 PDS5BQ9NTI5 1447 aa24.69■■□□□ 1.54
SNX20-204ENST00000568993 UBTFP17480 764 aaKnown RBP24.68■■□□□ 1.54
SNX20-204ENST00000568993 PRXQ9BXM0 1461 aa24.67■■□□□ 1.54
SNX20-204ENST00000568993 TOPBP1Q92547 1522 aa24.65■■□□□ 1.54
SNX20-204ENST00000568993 ERICH3Q5RHP9 1530 aa24.65■■□□□ 1.54
SNX20-204ENST00000568993 RAPGEF2Q9Y4G8 1499 aa24.64■■□□□ 1.53
SNX20-204ENST00000568993 CUX2O14529 1486 aa24.58■■□□□ 1.53
SNX20-204ENST00000568993 PCGF6Q9BYE7 350 aa24.57■■□□□ 1.52
SNX20-204ENST00000568993 URB2Q14146 1524 aaKnown RBP24.56■■□□□ 1.52
SNX20-204ENST00000568993 TRIM26Q12899 539 aaPredicted RBP24.56■■□□□ 1.52
SNX20-204ENST00000568993 POLA1P09884 1462 aaPredicted RBP24.55■■□□□ 1.52
SNX20-204ENST00000568993 KIF21AQ7Z4S6 1674 aa24.54■■□□□ 1.52
SNX20-204ENST00000568993 ABCA10Q8WWZ4 1543 aa24.52■■□□□ 1.52
SNX20-204ENST00000568993 IGF1RP08069 1367 aa24.51■■□□□ 1.51
SNX20-204ENST00000568993 RAD54L2Q9Y4B4 1467 aa24.46■■□□□ 1.51
SNX20-204ENST00000568993 CLIP1P30622 1438 aa24.44■■□□□ 1.5
SNX20-204ENST00000568993 WDR97A6NE52 1622 aa24.4■■□□□ 1.5
SNX20-204ENST00000568993 CARMIL1Q5VZK9 1371 aa24.37■■□□□ 1.49
SNX20-204ENST00000568993 MRC2Q9UBG0 1479 aa24.34■■□□□ 1.49
SNX20-204ENST00000568993 VPS8Q8N3P4 1428 aa24.29■■□□□ 1.48
SNX20-204ENST00000568993 ABCA5Q8WWZ7 1642 aa24.28■■□□□ 1.48
SNX20-204ENST00000568993 TARBP1Q13395 1621 aaKnown RBP24.28■■□□□ 1.48
SNX20-204ENST00000568993 CUL7Q14999 1698 aa24.28■■□□□ 1.48
SNX20-204ENST00000568993 WDR62O43379 1518 aa24.22■■□□□ 1.47
SNX20-204ENST00000568993 GAPVD1Q14C86 1478 aa24.21■■□□□ 1.47
SNX20-204ENST00000568993 TDRD9Q8NDG6 1382 aaKnown RBP24.19■■□□□ 1.46
SNX20-204ENST00000568993 PPARGC1BQ86YN6 1023 aaKnown RBP24.19■■□□□ 1.46
SNX20-204ENST00000568993 ARAP1Q96P48 1450 aa24.18■■□□□ 1.46
SNX20-204ENST00000568993 HRCP23327 699 aa24.14■■□□□ 1.45
SNX20-204ENST00000568993 ARHGAP35Q9NRY4 1499 aa24.13■■□□□ 1.45
SNX20-204ENST00000568993 RANGAP1P46060 587 aaPredicted RBP24.13■■□□□ 1.45
SNX20-204ENST00000568993 ERCC6Q03468 1493 aa24.11■■□□□ 1.45
SNX20-204ENST00000568993 IFT140Q96RY7 1462 aa24.11■■□□□ 1.45
SNX20-204ENST00000568993 THOC2Q8NI27 1593 aaKnown RBP24.07■■□□□ 1.44
SNX20-204ENST00000568993 PBRM1Q86U86 1689 aa24.04■■□□□ 1.44
SNX20-204ENST00000568993 CTTNBP2Q8WZ74 1663 aa24.03■■□□□ 1.44
SNX20-204ENST00000568993 APLP2Q06481 763 aa24.01■■□□□ 1.43
SNX20-204ENST00000568993 AQRO60306 1485 aaKnown RBP eCLIP24■■□□□ 1.43
SNX20-204ENST00000568993 GRIN2BQ13224 1484 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms