RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 NISCHQ9Y2I1 1504 aa25.6■■□□□ 1.69
VPS39-211ENST00000568755 CCDC180Q9P1Z9 1646 aa23.06■■□□□ 1.28
VPS39-211ENST00000568755 ABCC9O60706 1549 aa23■■□□□ 1.27
VPS39-211ENST00000568755 AEBP2Q6ZN18 517 aaPredicted RBP22.02■■□□□ 1.12
VPS39-211ENST00000568755 RB1CC1Q8TDY2 1594 aa21.91■■□□□ 1.1
VPS39-211ENST00000568755 NACADO15069 1562 aa21.76■■□□□ 1.07
VPS39-211ENST00000568755 DNAJC5BQ9UF47 199 aa21.61■■□□□ 1.05
VPS39-211ENST00000568755 UNC13AQ9UPW8 1703 aa21.56■■□□□ 1.04
VPS39-211ENST00000568755 MYO15BQ96JP2 1530 aa21.47■■□□□ 1.03
VPS39-211ENST00000568755 DCAF8L2P0C7V8 631 aa21.47■■□□□ 1.03
VPS39-211ENST00000568755 PABPN1Q86U42 306 aaKnown RBP eCLIP21.35■■□□□ 1.01
VPS39-211ENST00000568755 BICRAQ9NZM4 1560 aa21.32■■□□□ 1
VPS39-211ENST00000568755 ZCCHC6Q5VYS8 1495 aaKnown RBP21.22■□□□□ 0.99
VPS39-211ENST00000568755 DCAF1Q9Y4B6 1507 aa21.17■□□□□ 0.98
VPS39-211ENST00000568755 CHIC1Q5VXU3 224 aa21.16■□□□□ 0.98
VPS39-211ENST00000568755 SHROOM4Q9ULL8 1493 aa21.01■□□□□ 0.95
VPS39-211ENST00000568755 SCRIBQ14160 1630 aa20.95■□□□□ 0.94
VPS39-211ENST00000568755 CC2D2AQ9P2K1 1620 aa20.83■□□□□ 0.93
VPS39-211ENST00000568755 EIF4G1Q04637 1599 aaKnown RBP20.77■□□□□ 0.92
VPS39-211ENST00000568755 CECR2Q9BXF3 1484 aa20.73■□□□□ 0.91
VPS39-211ENST00000568755 NCAPD3P42695 1498 aa20.06■□□□□ 0.8
VPS39-211ENST00000568755 SMARCA4P51532 1647 aa20.01■□□□□ 0.79
VPS39-211ENST00000568755 ATAD2BQ9ULI0 1458 aa20■□□□□ 0.79
VPS39-211ENST00000568755 HMGXB3Q12766 1538 aa19.95■□□□□ 0.78
VPS39-211ENST00000568755 SMARCA2P51531 1590 aa19.95■□□□□ 0.78
VPS39-211ENST00000568755 BAZ1AQ9NRL2 1556 aaPredicted RBP19.87■□□□□ 0.77
VPS39-211ENST00000568755 CUX2O14529 1486 aa19.87■□□□□ 0.77
VPS39-211ENST00000568755 DNAJC5Q9H3Z4 198 aa19.86■□□□□ 0.77
VPS39-211ENST00000568755 ERCC6Q03468 1493 aa19.84■□□□□ 0.77
VPS39-211ENST00000568755 PEG3Q9GZU2 1588 aa19.83■□□□□ 0.77
VPS39-211ENST00000568755 BAZ1BQ9UIG0 1483 aaKnown RBP19.79■□□□□ 0.76
VPS39-211ENST00000568755 NESP48681 1621 aa19.76■□□□□ 0.75
VPS39-211ENST00000568755 MROH2BQ7Z745 1585 aa19.72■□□□□ 0.75
VPS39-211ENST00000568755 THOC2Q8NI27 1593 aaKnown RBP19.65■□□□□ 0.74
VPS39-211ENST00000568755 LAMC3Q9Y6N6 1575 aa19.65■□□□□ 0.74
VPS39-211ENST00000568755 KIF21AQ7Z4S6 1674 aa19.59■□□□□ 0.73
VPS39-211ENST00000568755 WIZO95785 1651 aa19.52■□□□□ 0.71
VPS39-211ENST00000568755 PDS5BQ9NTI5 1447 aa19.47■□□□□ 0.71
VPS39-211ENST00000568755 CADPSQ9ULU8 1353 aa19.43■□□□□ 0.7
VPS39-211ENST00000568755 MRC2Q9UBG0 1479 aa19.34■□□□□ 0.69
VPS39-211ENST00000568755 WDR62O43379 1518 aa19.33■□□□□ 0.68
VPS39-211ENST00000568755 RSF1Q96T23 1441 aaPredicted RBP19.27■□□□□ 0.68
VPS39-211ENST00000568755 TOP2AP11388 1531 aaKnown RBP19.25■□□□□ 0.67
VPS39-211ENST00000568755 CEP164Q9UPV0 1460 aa19.24■□□□□ 0.67
VPS39-211ENST00000568755 CFTRP13569 1480 aa19.22■□□□□ 0.67
VPS39-211ENST00000568755 FANCD2Q9BXW9 1451 aa19.22■□□□□ 0.67
VPS39-211ENST00000568755 PRDM2Q13029 1718 aa19.17■□□□□ 0.66
VPS39-211ENST00000568755 URB2Q14146 1524 aaKnown RBP19.09■□□□□ 0.65
VPS39-211ENST00000568755 CCDC88BA6NC98 1476 aa19■□□□□ 0.63
VPS39-211ENST00000568755 TRIM41Q8WV44 630 aa18.92■□□□□ 0.62
VPS39-211ENST00000568755 TOPBP1Q92547 1522 aa18.88■□□□□ 0.61
VPS39-211ENST00000568755 OSCARQ8IYS5 282 aa18.87■□□□□ 0.61
VPS39-211ENST00000568755 IFT140Q96RY7 1462 aa18.87■□□□□ 0.61
VPS39-211ENST00000568755 ZNF608Q9ULD9 1512 aaPredicted RBP18.85■□□□□ 0.61
VPS39-211ENST00000568755 ABCC8Q09428 1581 aa18.81■□□□□ 0.6
VPS39-211ENST00000568755 DNMBPQ6XZF7 1577 aa18.81■□□□□ 0.6
VPS39-211ENST00000568755 EIF4G3O43432 1585 aaKnown RBP18.79■□□□□ 0.6
VPS39-211ENST00000568755 TARBP1Q13395 1621 aaKnown RBP18.75■□□□□ 0.59
VPS39-211ENST00000568755 RIMBP3CA6NJZ7 1639 aa18.74■□□□□ 0.59
VPS39-211ENST00000568755 RIMBP3BA6NNM3 1639 aa18.74■□□□□ 0.59
VPS39-211ENST00000568755 RIMBP3Q9UFD9 1639 aa18.74■□□□□ 0.59
VPS39-211ENST00000568755 SENP3Q9H4L4 574 aaPredicted RBP18.74■□□□□ 0.59
VPS39-211ENST00000568755 CHD1O14646 1710 aa18.69■□□□□ 0.58
VPS39-211ENST00000568755 POLA1P09884 1462 aaPredicted RBP18.67■□□□□ 0.58
VPS39-211ENST00000568755 ARHGEF11O15085 1522 aa18.65■□□□□ 0.58
VPS39-211ENST00000568755 AQRO60306 1485 aaKnown RBP eCLIP18.65■□□□□ 0.58
VPS39-211ENST00000568755 RAD54L2Q9Y4B4 1467 aa18.58■□□□□ 0.57
VPS39-211ENST00000568755 PHF23Q9BUL5 403 aaPredicted RBP18.57■□□□□ 0.56
VPS39-211ENST00000568755 WDR97A6NE52 1622 aa18.56■□□□□ 0.56
VPS39-211ENST00000568755 FGD5Q6ZNL6 1462 aa18.54■□□□□ 0.56
VPS39-211ENST00000568755 SOGA1O94964 1423 aa18.54■□□□□ 0.56
VPS39-211ENST00000568755 CUX1P39880 1505 aa18.54■□□□□ 0.56
VPS39-211ENST00000568755 TDRD9Q8NDG6 1382 aaKnown RBP18.51■□□□□ 0.55
VPS39-211ENST00000568755 SNAPC4Q5SXM2 1469 aa18.47■□□□□ 0.55
VPS39-211ENST00000568755 ARAP1Q96P48 1450 aa18.47■□□□□ 0.55
VPS39-211ENST00000568755 FBLN2P98095 1184 aa18.45■□□□□ 0.54
VPS39-211ENST00000568755 CLASP1Q7Z460 1538 aa18.44■□□□□ 0.54
VPS39-211ENST00000568755 MAGI1Q96QZ7 1491 aaPredicted RBP18.44■□□□□ 0.54
VPS39-211ENST00000568755 CYB5RLQ6IPT4 315 aa18.43■□□□□ 0.54
VPS39-211ENST00000568755 PBRM1Q86U86 1689 aa18.43■□□□□ 0.54
VPS39-211ENST00000568755 GRIN2BQ13224 1484 aa18.4■□□□□ 0.54
VPS39-211ENST00000568755 SYNJ1O43426 1573 aa18.39■□□□□ 0.53
VPS39-211ENST00000568755 SYNJ2O15056 1496 aa18.37■□□□□ 0.53
VPS39-211ENST00000568755 ABCA5Q8WWZ7 1642 aa18.37■□□□□ 0.53
VPS39-211ENST00000568755 ABCA10Q8WWZ4 1543 aa18.34■□□□□ 0.53
VPS39-211ENST00000568755 GAPVD1Q14C86 1478 aa18.34■□□□□ 0.53
VPS39-211ENST00000568755 CHMP7Q8WUX9 453 aaPredicted RBP18.33■□□□□ 0.52
VPS39-211ENST00000568755 SUPT5HO00267 1087 aaKnown RBP18.28■□□□□ 0.52
VPS39-211ENST00000568755 BIVM-ERCC5R4GMW8 1640 aa18.27■□□□□ 0.52
VPS39-211ENST00000568755 TOP2BQ02880 1626 aa18.24■□□□□ 0.51
VPS39-211ENST00000568755 WRNQ14191 1432 aaPredicted RBP eCLIP18.22■□□□□ 0.51
VPS39-211ENST00000568755 ADAMTS12P58397 1594 aa18.21■□□□□ 0.51
VPS39-211ENST00000568755 TRHP20396 242 aaPredicted RBP18.21■□□□□ 0.51
VPS39-211ENST00000568755 GRIN2AQ12879 1464 aa18.19■□□□□ 0.5
VPS39-211ENST00000568755 CEP170Q5SW79 1584 aa18.16■□□□□ 0.5
VPS39-211ENST00000568755 NUP160Q12769 1436 aa18.15■□□□□ 0.5
VPS39-211ENST00000568755 ERCC6L2Q5T890 1561 aa18.14■□□□□ 0.49
VPS39-211ENST00000568755 SHROOM2Q13796 1616 aa18.12■□□□□ 0.49
VPS39-211ENST00000568755 ERICH3Q5RHP9 1530 aa18.12■□□□□ 0.49
VPS39-211ENST00000568755 FHAD1B1AJZ9 1412 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms