RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 NISCHQ9Y2I1 1504 aa23.47■■□□□ 1.35
SF3B3-211ENST00000568291 CCDC180Q9P1Z9 1646 aa21.2■□□□□ 0.98
SF3B3-211ENST00000568291 ABCC9O60706 1549 aa21.15■□□□□ 0.98
SF3B3-211ENST00000568291 AEBP2Q6ZN18 517 aaPredicted RBP20.2■□□□□ 0.82
SF3B3-211ENST00000568291 RB1CC1Q8TDY2 1594 aa20.15■□□□□ 0.82
SF3B3-211ENST00000568291 NACADO15069 1562 aa19.97■□□□□ 0.79
SF3B3-211ENST00000568291 DNAJC5BQ9UF47 199 aa19.79■□□□□ 0.76
SF3B3-211ENST00000568291 UNC13AQ9UPW8 1703 aa19.79■□□□□ 0.76
SF3B3-211ENST00000568291 DCAF8L2P0C7V8 631 aa19.71■□□□□ 0.75
SF3B3-211ENST00000568291 MYO15BQ96JP2 1530 aa19.66■□□□□ 0.74
SF3B3-211ENST00000568291 PABPN1Q86U42 306 aaKnown RBP eCLIP19.6■□□□□ 0.73
SF3B3-211ENST00000568291 BICRAQ9NZM4 1560 aa19.56■□□□□ 0.72
SF3B3-211ENST00000568291 ZCCHC6Q5VYS8 1495 aaKnown RBP19.47■□□□□ 0.71
SF3B3-211ENST00000568291 DCAF1Q9Y4B6 1507 aa19.4■□□□□ 0.7
SF3B3-211ENST00000568291 SHROOM4Q9ULL8 1493 aa19.3■□□□□ 0.68
SF3B3-211ENST00000568291 SCRIBQ14160 1630 aa19.29■□□□□ 0.68
SF3B3-211ENST00000568291 CHIC1Q5VXU3 224 aa19.22■□□□□ 0.67
SF3B3-211ENST00000568291 CC2D2AQ9P2K1 1620 aa19.14■□□□□ 0.66
SF3B3-211ENST00000568291 EIF4G1Q04637 1599 aaKnown RBP19.08■□□□□ 0.65
SF3B3-211ENST00000568291 CECR2Q9BXF3 1484 aa19.06■□□□□ 0.64
SF3B3-211ENST00000568291 NCAPD3P42695 1498 aa18.38■□□□□ 0.53
SF3B3-211ENST00000568291 SMARCA4P51532 1647 aa18.38■□□□□ 0.53
SF3B3-211ENST00000568291 SMARCA2P51531 1590 aa18.34■□□□□ 0.53
SF3B3-211ENST00000568291 ATAD2BQ9ULI0 1458 aa18.33■□□□□ 0.53
SF3B3-211ENST00000568291 HMGXB3Q12766 1538 aa18.33■□□□□ 0.52
SF3B3-211ENST00000568291 CUX2O14529 1486 aa18.28■□□□□ 0.52
SF3B3-211ENST00000568291 ERCC6Q03468 1493 aa18.28■□□□□ 0.52
SF3B3-211ENST00000568291 BAZ1AQ9NRL2 1556 aaPredicted RBP18.25■□□□□ 0.51
SF3B3-211ENST00000568291 DNAJC5Q9H3Z4 198 aa18.22■□□□□ 0.51
SF3B3-211ENST00000568291 BAZ1BQ9UIG0 1483 aaKnown RBP18.19■□□□□ 0.5
SF3B3-211ENST00000568291 PEG3Q9GZU2 1588 aa18.17■□□□□ 0.5
SF3B3-211ENST00000568291 NESP48681 1621 aa18.16■□□□□ 0.5
SF3B3-211ENST00000568291 MROH2BQ7Z745 1585 aa18.08■□□□□ 0.49
SF3B3-211ENST00000568291 THOC2Q8NI27 1593 aaKnown RBP18.07■□□□□ 0.48
SF3B3-211ENST00000568291 LAMC3Q9Y6N6 1575 aa18.05■□□□□ 0.48
SF3B3-211ENST00000568291 KIF21AQ7Z4S6 1674 aa18.02■□□□□ 0.47
SF3B3-211ENST00000568291 WIZO95785 1651 aa17.91■□□□□ 0.46
SF3B3-211ENST00000568291 PDS5BQ9NTI5 1447 aa17.89■□□□□ 0.45
SF3B3-211ENST00000568291 CADPSQ9ULU8 1353 aa17.8■□□□□ 0.44
SF3B3-211ENST00000568291 MRC2Q9UBG0 1479 aa17.79■□□□□ 0.44
SF3B3-211ENST00000568291 WDR62O43379 1518 aa17.76■□□□□ 0.43
SF3B3-211ENST00000568291 CEP164Q9UPV0 1460 aa17.71■□□□□ 0.43
SF3B3-211ENST00000568291 TOP2AP11388 1531 aaKnown RBP17.68■□□□□ 0.42
SF3B3-211ENST00000568291 FANCD2Q9BXW9 1451 aa17.65■□□□□ 0.42
SF3B3-211ENST00000568291 RSF1Q96T23 1441 aaPredicted RBP17.64■□□□□ 0.42
SF3B3-211ENST00000568291 PRDM2Q13029 1718 aa17.63■□□□□ 0.41
SF3B3-211ENST00000568291 CFTRP13569 1480 aa17.62■□□□□ 0.41
SF3B3-211ENST00000568291 URB2Q14146 1524 aaKnown RBP17.52■□□□□ 0.4
SF3B3-211ENST00000568291 TRIM41Q8WV44 630 aa17.43■□□□□ 0.38
SF3B3-211ENST00000568291 CCDC88BA6NC98 1476 aa17.4■□□□□ 0.38
SF3B3-211ENST00000568291 TOPBP1Q92547 1522 aa17.33■□□□□ 0.37
SF3B3-211ENST00000568291 IFT140Q96RY7 1462 aa17.33■□□□□ 0.37
SF3B3-211ENST00000568291 OSCARQ8IYS5 282 aa17.31■□□□□ 0.36
SF3B3-211ENST00000568291 ZNF608Q9ULD9 1512 aaPredicted RBP17.31■□□□□ 0.36
SF3B3-211ENST00000568291 DNMBPQ6XZF7 1577 aa17.3■□□□□ 0.36
SF3B3-211ENST00000568291 EIF4G3O43432 1585 aaKnown RBP17.29■□□□□ 0.36
SF3B3-211ENST00000568291 SUPT5HO00267 1087 aaKnown RBP17.29■□□□□ 0.36
SF3B3-211ENST00000568291 RIMBP3CA6NJZ7 1639 aa17.25■□□□□ 0.35
SF3B3-211ENST00000568291 RIMBP3BA6NNM3 1639 aa17.25■□□□□ 0.35
SF3B3-211ENST00000568291 RIMBP3Q9UFD9 1639 aa17.25■□□□□ 0.35
SF3B3-211ENST00000568291 ABCC8Q09428 1581 aa17.25■□□□□ 0.35
SF3B3-211ENST00000568291 SENP3Q9H4L4 574 aaPredicted RBP17.22■□□□□ 0.35
SF3B3-211ENST00000568291 CHD1O14646 1710 aa17.21■□□□□ 0.35
SF3B3-211ENST00000568291 TARBP1Q13395 1621 aaKnown RBP17.21■□□□□ 0.35
SF3B3-211ENST00000568291 ARHGEF11O15085 1522 aa17.16■□□□□ 0.34
SF3B3-211ENST00000568291 POLA1P09884 1462 aaPredicted RBP17.14■□□□□ 0.33
SF3B3-211ENST00000568291 AQRO60306 1485 aaKnown RBP eCLIP17.11■□□□□ 0.333e-15■■■■□ 24.7
SF3B3-211ENST00000568291 RAD54L2Q9Y4B4 1467 aa17.05■□□□□ 0.32
SF3B3-211ENST00000568291 WDR97A6NE52 1622 aa17.05■□□□□ 0.32
SF3B3-211ENST00000568291 FGD5Q6ZNL6 1462 aa17.04■□□□□ 0.32
SF3B3-211ENST00000568291 CUX1P39880 1505 aa17.01■□□□□ 0.31
SF3B3-211ENST00000568291 SOGA1O94964 1423 aa17.01■□□□□ 0.31
SF3B3-211ENST00000568291 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
SF3B3-211ENST00000568291 ARAP1Q96P48 1450 aa16.99■□□□□ 0.31
SF3B3-211ENST00000568291 PHF23Q9BUL5 403 aaPredicted RBP16.99■□□□□ 0.31
SF3B3-211ENST00000568291 TDRD9Q8NDG6 1382 aaKnown RBP16.98■□□□□ 0.31
SF3B3-211ENST00000568291 FBLN2P98095 1184 aa16.97■□□□□ 0.31
SF3B3-211ENST00000568291 PBRM1Q86U86 1689 aa16.96■□□□□ 0.31
SF3B3-211ENST00000568291 CLASP1Q7Z460 1538 aa16.95■□□□□ 0.3
SF3B3-211ENST00000568291 MAGI1Q96QZ7 1491 aaPredicted RBP16.94■□□□□ 0.3
SF3B3-211ENST00000568291 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
SF3B3-211ENST00000568291 CYB5RLQ6IPT4 315 aa16.92■□□□□ 0.3
SF3B3-211ENST00000568291 GRIN2BQ13224 1484 aa16.92■□□□□ 0.3
SF3B3-211ENST00000568291 SYNJ2O15056 1496 aa16.87■□□□□ 0.29
SF3B3-211ENST00000568291 ABCA5Q8WWZ7 1642 aa16.87■□□□□ 0.29
SF3B3-211ENST00000568291 GAPVD1Q14C86 1478 aa16.84■□□□□ 0.29
SF3B3-211ENST00000568291 CHMP7Q8WUX9 453 aaPredicted RBP16.83■□□□□ 0.28
SF3B3-211ENST00000568291 ABCA10Q8WWZ4 1543 aa16.83■□□□□ 0.28
SF3B3-211ENST00000568291 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
SF3B3-211ENST00000568291 TRHP20396 242 aaPredicted RBP16.77■□□□□ 0.28
SF3B3-211ENST00000568291 ADAMTS12P58397 1594 aa16.76■□□□□ 0.27
SF3B3-211ENST00000568291 TOP2BQ02880 1626 aa16.74■□□□□ 0.27
SF3B3-211ENST00000568291 WRNQ14191 1432 aaPredicted RBP eCLIP16.71■□□□□ 0.27
SF3B3-211ENST00000568291 GRIN2AQ12879 1464 aa16.71■□□□□ 0.27
SF3B3-211ENST00000568291 CEP170Q5SW79 1584 aa16.68■□□□□ 0.26
SF3B3-211ENST00000568291 ERCC6L2Q5T890 1561 aa16.67■□□□□ 0.26
SF3B3-211ENST00000568291 NUP160Q12769 1436 aa16.64■□□□□ 0.25
SF3B3-211ENST00000568291 SHROOM2Q13796 1616 aa16.64■□□□□ 0.25
SF3B3-211ENST00000568291 ERICH3Q5RHP9 1530 aa16.63■□□□□ 0.25
SF3B3-211ENST00000568291 FHAD1B1AJZ9 1412 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms