RNA–Protein interactions for RNA: ENST00000561514.1

PALB2-202, Transcript of partner and localizer of BRCA2, humanhuman

TSL 5

Gene PALB2, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-202ENST00000561514 NISCHQ9Y2I1 1504 aa21.35■■□□□ 1.01
PALB2-202ENST00000561514 CCDC180Q9P1Z9 1646 aa19.15■□□□□ 0.66
PALB2-202ENST00000561514 ABCC9O60706 1549 aa19.14■□□□□ 0.65
PALB2-202ENST00000561514 RB1CC1Q8TDY2 1594 aa18.24■□□□□ 0.51
PALB2-202ENST00000561514 NACADO15069 1562 aa18.15■□□□□ 0.5
PALB2-202ENST00000561514 DNAJC5BQ9UF47 199 aa18.03■□□□□ 0.48
PALB2-202ENST00000561514 MYO15BQ96JP2 1530 aa17.99■□□□□ 0.47
PALB2-202ENST00000561514 DCAF8L2P0C7V8 631 aa17.81■□□□□ 0.44
PALB2-202ENST00000561514 PABPN1Q86U42 306 aaKnown RBP eCLIP17.78■□□□□ 0.44
PALB2-202ENST00000561514 BICRAQ9NZM4 1560 aa17.75■□□□□ 0.43
PALB2-202ENST00000561514 ZCCHC6Q5VYS8 1495 aaKnown RBP17.72■□□□□ 0.43
PALB2-202ENST00000561514 UNC13AQ9UPW8 1703 aa17.72■□□□□ 0.43
PALB2-202ENST00000561514 DCAF1Q9Y4B6 1507 aa17.72■□□□□ 0.43
PALB2-202ENST00000561514 AEBP2Q6ZN18 517 aaPredicted RBP17.69■□□□□ 0.42
PALB2-202ENST00000561514 SHROOM4Q9ULL8 1493 aa17.62■□□□□ 0.41
PALB2-202ENST00000561514 SCRIBQ14160 1630 aa17.36■□□□□ 0.37
PALB2-202ENST00000561514 CC2D2AQ9P2K1 1620 aa17.3■□□□□ 0.36
PALB2-202ENST00000561514 EIF4G1Q04637 1599 aaKnown RBP17.3■□□□□ 0.36
PALB2-202ENST00000561514 CECR2Q9BXF3 1484 aa17.3■□□□□ 0.36
PALB2-202ENST00000561514 CHIC1Q5VXU3 224 aa17.25■□□□□ 0.35
PALB2-202ENST00000561514 NCAPD3P42695 1498 aa16.8■□□□□ 0.28
PALB2-202ENST00000561514 ATAD2BQ9ULI0 1458 aa16.71■□□□□ 0.27
PALB2-202ENST00000561514 HMGXB3Q12766 1538 aa16.65■□□□□ 0.26
PALB2-202ENST00000561514 SMARCA2P51531 1590 aa16.64■□□□□ 0.25
PALB2-202ENST00000561514 SMARCA4P51532 1647 aa16.63■□□□□ 0.25
PALB2-202ENST00000561514 DNAJC5Q9H3Z4 198 aa16.62■□□□□ 0.25
PALB2-202ENST00000561514 CUX2O14529 1486 aa16.61■□□□□ 0.25
PALB2-202ENST00000561514 PEG3Q9GZU2 1588 aa16.56■□□□□ 0.24
PALB2-202ENST00000561514 BAZ1AQ9NRL2 1556 aaPredicted RBP16.56■□□□□ 0.24
PALB2-202ENST00000561514 ERCC6Q03468 1493 aa16.52■□□□□ 0.23
PALB2-202ENST00000561514 BAZ1BQ9UIG0 1483 aaKnown RBP16.49■□□□□ 0.23
PALB2-202ENST00000561514 NESP48681 1621 aa16.44■□□□□ 0.22
PALB2-202ENST00000561514 MROH2BQ7Z745 1585 aa16.42■□□□□ 0.22
PALB2-202ENST00000561514 LAMC3Q9Y6N6 1575 aa16.36■□□□□ 0.21
PALB2-202ENST00000561514 THOC2Q8NI27 1593 aaKnown RBP16.33■□□□□ 0.2
PALB2-202ENST00000561514 PDS5BQ9NTI5 1447 aa16.28■□□□□ 0.2
PALB2-202ENST00000561514 CADPSQ9ULU8 1353 aa16.25■□□□□ 0.19
PALB2-202ENST00000561514 KIF21AQ7Z4S6 1674 aa16.17■□□□□ 0.18
PALB2-202ENST00000561514 MRC2Q9UBG0 1479 aa16.15■□□□□ 0.18
PALB2-202ENST00000561514 WIZO95785 1651 aa16.14■□□□□ 0.18
PALB2-202ENST00000561514 WDR62O43379 1518 aa16.13■□□□□ 0.17
PALB2-202ENST00000561514 RSF1Q96T23 1441 aaPredicted RBP16.1■□□□□ 0.17
PALB2-202ENST00000561514 CFTRP13569 1480 aa16.08■□□□□ 0.16
PALB2-202ENST00000561514 CEP164Q9UPV0 1460 aa16.04■□□□□ 0.16
PALB2-202ENST00000561514 TOP2AP11388 1531 aaKnown RBP16.04■□□□□ 0.16
PALB2-202ENST00000561514 FANCD2Q9BXW9 1451 aa16.03■□□□□ 0.16
PALB2-202ENST00000561514 URB2Q14146 1524 aaKnown RBP15.91■□□□□ 0.14
PALB2-202ENST00000561514 CCDC88BA6NC98 1476 aa15.83■□□□□ 0.12
PALB2-202ENST00000561514 OSCARQ8IYS5 282 aa15.76■□□□□ 0.11
PALB2-202ENST00000561514 PRDM2Q13029 1718 aa15.76■□□□□ 0.11
PALB2-202ENST00000561514 IFT140Q96RY7 1462 aa15.76■□□□□ 0.11
PALB2-202ENST00000561514 TOPBP1Q92547 1522 aa15.73■□□□□ 0.11
PALB2-202ENST00000561514 TRIM41Q8WV44 630 aa15.72■□□□□ 0.11
PALB2-202ENST00000561514 ABCC8Q09428 1581 aa15.7■□□□□ 0.1
PALB2-202ENST00000561514 ZNF608Q9ULD9 1512 aaPredicted RBP15.7■□□□□ 0.1
PALB2-202ENST00000561514 DNMBPQ6XZF7 1577 aa15.66■□□□□ 0.1
PALB2-202ENST00000561514 EIF4G3O43432 1585 aaKnown RBP15.59■□□□□ 0.09
PALB2-202ENST00000561514 TARBP1Q13395 1621 aaKnown RBP15.59■□□□□ 0.09
PALB2-202ENST00000561514 POLA1P09884 1462 aaPredicted RBP15.58■□□□□ 0.08
PALB2-202ENST00000561514 RIMBP3CA6NJZ7 1639 aa15.55■□□□□ 0.08
PALB2-202ENST00000561514 RIMBP3BA6NNM3 1639 aa15.55■□□□□ 0.08
PALB2-202ENST00000561514 RIMBP3Q9UFD9 1639 aa15.55■□□□□ 0.08
PALB2-202ENST00000561514 ARHGEF11O15085 1522 aa15.55■□□□□ 0.08
PALB2-202ENST00000561514 AQRO60306 1485 aaKnown RBP eCLIP15.53■□□□□ 0.082e-7■□□□□ 8.7
PALB2-202ENST00000561514 WDR97A6NE52 1622 aa15.48■□□□□ 0.07
PALB2-202ENST00000561514 RAD54L2Q9Y4B4 1467 aa15.47■□□□□ 0.07
PALB2-202ENST00000561514 SOGA1O94964 1423 aa15.46■□□□□ 0.07
PALB2-202ENST00000561514 FGD5Q6ZNL6 1462 aa15.44■□□□□ 0.06
PALB2-202ENST00000561514 CUX1P39880 1505 aa15.43■□□□□ 0.06
PALB2-202ENST00000561514 TDRD9Q8NDG6 1382 aaKnown RBP15.43■□□□□ 0.06
PALB2-202ENST00000561514 ARAP1Q96P48 1450 aa15.41■□□□□ 0.06
PALB2-202ENST00000561514 CHD1O14646 1710 aa15.4■□□□□ 0.06
PALB2-202ENST00000561514 MAGI1Q96QZ7 1491 aaPredicted RBP15.4■□□□□ 0.06
PALB2-202ENST00000561514 SNAPC4Q5SXM2 1469 aa15.39■□□□□ 0.05
PALB2-202ENST00000561514 CLASP1Q7Z460 1538 aa15.38■□□□□ 0.05
PALB2-202ENST00000561514 GRIN2BQ13224 1484 aa15.37■□□□□ 0.05
PALB2-202ENST00000561514 CYB5RLQ6IPT4 315 aa15.35■□□□□ 0.05
PALB2-202ENST00000561514 SYNJ2O15056 1496 aa15.33■□□□□ 0.05
PALB2-202ENST00000561514 FBLN2P98095 1184 aa15.33■□□□□ 0.04
PALB2-202ENST00000561514 ABCA10Q8WWZ4 1543 aa15.32■□□□□ 0.04
PALB2-202ENST00000561514 SYNJ1O43426 1573 aa15.3■□□□□ 0.04
PALB2-202ENST00000561514 GAPVD1Q14C86 1478 aa15.29■□□□□ 0.04
PALB2-202ENST00000561514 CHMP7Q8WUX9 453 aaPredicted RBP15.28■□□□□ 0.04
PALB2-202ENST00000561514 PHF23Q9BUL5 403 aaPredicted RBP15.27■□□□□ 0.04
PALB2-202ENST00000561514 ABCA5Q8WWZ7 1642 aa15.27■□□□□ 0.03
PALB2-202ENST00000561514 WRNQ14191 1432 aaPredicted RBP eCLIP15.21■□□□□ 0.03
PALB2-202ENST00000561514 PBRM1Q86U86 1689 aa15.2■□□□□ 0.02
PALB2-202ENST00000561514 NUP160Q12769 1436 aa15.17■□□□□ 0.02
PALB2-202ENST00000561514 TOP2BQ02880 1626 aa15.17■□□□□ 0.02
PALB2-202ENST00000561514 GRIN2AQ12879 1464 aa15.17■□□□□ 0.02
PALB2-202ENST00000561514 SUPT5HO00267 1087 aaKnown RBP15.16■□□□□ 0.02
PALB2-202ENST00000561514 BIVM-ERCC5R4GMW8 1640 aa15.16■□□□□ 0.02
PALB2-202ENST00000561514 ADAMTS12P58397 1594 aa15.15■□□□□ 0.02
PALB2-202ENST00000561514 TRHP20396 242 aaPredicted RBP15.13■□□□□ 0.01
PALB2-202ENST00000561514 FHAD1B1AJZ9 1412 aa15.12■□□□□ 0.01
PALB2-202ENST00000561514 ERICH3Q5RHP9 1530 aa15.11■□□□□ 0.01
PALB2-202ENST00000561514 CEP170Q5SW79 1584 aa15.1■□□□□ 0.01
PALB2-202ENST00000561514 SHROOM2Q13796 1616 aa15.07■□□□□ 0
PALB2-202ENST00000561514 ERCC6L2Q5T890 1561 aa15.07■□□□□ 0
PALB2-202ENST00000561514 PRG4Q92954 1404 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms