RNA–Protein interactions for RNA: ENST00000560897.1

HERC1-210, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-210ENST00000560897 NISCHQ9Y2I1 1504 aa24.66■■□□□ 1.54
HERC1-210ENST00000560897 ABCC9O60706 1549 aa23.17■■□□□ 1.3
HERC1-210ENST00000560897 CCDC180Q9P1Z9 1646 aa22.49■■□□□ 1.19
HERC1-210ENST00000560897 DNAJC5BQ9UF47 199 aa22.25■■□□□ 1.15
HERC1-210ENST00000560897 RB1CC1Q8TDY2 1594 aa21.78■■□□□ 1.08
HERC1-210ENST00000560897 PABPN1Q86U42 306 aaKnown RBP eCLIP21.44■■□□□ 1.02
HERC1-210ENST00000560897 NACADO15069 1562 aa21.43■■□□□ 1.02
HERC1-210ENST00000560897 UNC13AQ9UPW8 1703 aa21.22■□□□□ 0.99
HERC1-210ENST00000560897 DCAF8L2P0C7V8 631 aa21.22■□□□□ 0.99
HERC1-210ENST00000560897 BICRAQ9NZM4 1560 aa21.06■□□□□ 0.96
HERC1-210ENST00000560897 DNAJC5Q9H3Z4 198 aa21.03■□□□□ 0.96
HERC1-210ENST00000560897 CECR2Q9BXF3 1484 aa20.96■□□□□ 0.95
HERC1-210ENST00000560897 CC2D2AQ9P2K1 1620 aa20.89■□□□□ 0.94
HERC1-210ENST00000560897 MYO15BQ96JP2 1530 aa20.86■□□□□ 0.93
HERC1-210ENST00000560897 SHROOM4Q9ULL8 1493 aa20.81■□□□□ 0.92
HERC1-210ENST00000560897 EIF4G1Q04637 1599 aaKnown RBP20.67■□□□□ 0.9
HERC1-210ENST00000560897 SCRIBQ14160 1630 aa20.45■□□□□ 0.87
HERC1-210ENST00000560897 DCAF1Q9Y4B6 1507 aa20.32■□□□□ 0.84
HERC1-210ENST00000560897 ZCCHC6Q5VYS8 1495 aaKnown RBP20.3■□□□□ 0.84
HERC1-210ENST00000560897 CUX2O14529 1486 aa20.29■□□□□ 0.84
HERC1-210ENST00000560897 ERCC6Q03468 1493 aa20.14■□□□□ 0.81
HERC1-210ENST00000560897 TRIM41Q8WV44 630 aa19.91■□□□□ 0.78
HERC1-210ENST00000560897 NCAPD3P42695 1498 aa19.74■□□□□ 0.75
HERC1-210ENST00000560897 NESP48681 1621 aa19.66■□□□□ 0.74
HERC1-210ENST00000560897 THOC2Q8NI27 1593 aaKnown RBP19.63■□□□□ 0.73
HERC1-210ENST00000560897 ATAD2BQ9ULI0 1458 aa19.6■□□□□ 0.73
HERC1-210ENST00000560897 HMGXB3Q12766 1538 aa19.57■□□□□ 0.72
HERC1-210ENST00000560897 SMARCA2P51531 1590 aa19.56■□□□□ 0.72
HERC1-210ENST00000560897 AEBP2Q6ZN18 517 aaPredicted RBP19.51■□□□□ 0.71
HERC1-210ENST00000560897 LAMC3Q9Y6N6 1575 aa19.47■□□□□ 0.71
HERC1-210ENST00000560897 KIF21AQ7Z4S6 1674 aa19.43■□□□□ 0.7
HERC1-210ENST00000560897 BAZ1BQ9UIG0 1483 aaKnown RBP19.42■□□□□ 0.7
HERC1-210ENST00000560897 SMARCA4P51532 1647 aa19.42■□□□□ 0.7
HERC1-210ENST00000560897 PDS5BQ9NTI5 1447 aa19.41■□□□□ 0.7
HERC1-210ENST00000560897 BAZ1AQ9NRL2 1556 aaPredicted RBP19.32■□□□□ 0.68
HERC1-210ENST00000560897 MRC2Q9UBG0 1479 aa19.26■□□□□ 0.67
HERC1-210ENST00000560897 OSCARQ8IYS5 282 aa19.25■□□□□ 0.67
HERC1-210ENST00000560897 WDR62O43379 1518 aa19.21■□□□□ 0.67
HERC1-210ENST00000560897 PEG3Q9GZU2 1588 aa19.2■□□□□ 0.66
HERC1-210ENST00000560897 CADPSQ9ULU8 1353 aa19.14■□□□□ 0.65
HERC1-210ENST00000560897 CEP164Q9UPV0 1460 aa19.06■□□□□ 0.64
HERC1-210ENST00000560897 RIMBP3CA6NJZ7 1639 aa19.06■□□□□ 0.64
HERC1-210ENST00000560897 RIMBP3BA6NNM3 1639 aa19.06■□□□□ 0.64
HERC1-210ENST00000560897 RIMBP3Q9UFD9 1639 aa19.06■□□□□ 0.64
HERC1-210ENST00000560897 MROH2BQ7Z745 1585 aa18.98■□□□□ 0.63
HERC1-210ENST00000560897 FANCD2Q9BXW9 1451 aa18.94■□□□□ 0.62
HERC1-210ENST00000560897 TRHP20396 242 aaPredicted RBP18.93■□□□□ 0.62
HERC1-210ENST00000560897 ARHGEF11O15085 1522 aa18.92■□□□□ 0.62
HERC1-210ENST00000560897 CYB5RLQ6IPT4 315 aa18.84■□□□□ 0.61
HERC1-210ENST00000560897 URB2Q14146 1524 aaKnown RBP18.79■□□□□ 0.6
HERC1-210ENST00000560897 CFTRP13569 1480 aa18.76■□□□□ 0.59
HERC1-210ENST00000560897 WIZO95785 1651 aa18.74■□□□□ 0.59
HERC1-210ENST00000560897 IFT140Q96RY7 1462 aa18.69■□□□□ 0.58
HERC1-210ENST00000560897 ZNF608Q9ULD9 1512 aaPredicted RBP18.68■□□□□ 0.58
HERC1-210ENST00000560897 CHIC1Q5VXU3 224 aa18.67■□□□□ 0.58
HERC1-210ENST00000560897 ARAP1Q96P48 1450 aa18.66■□□□□ 0.58
HERC1-210ENST00000560897 CHD1O14646 1710 aa18.59■□□□□ 0.57
HERC1-210ENST00000560897 EIF4G3O43432 1585 aaKnown RBP18.59■□□□□ 0.57
HERC1-210ENST00000560897 RSF1Q96T23 1441 aaPredicted RBP18.58■□□□□ 0.57
HERC1-210ENST00000560897 PRDM2Q13029 1718 aa18.57■□□□□ 0.56
HERC1-210ENST00000560897 FBLN2P98095 1184 aa18.54■□□□□ 0.56
HERC1-210ENST00000560897 TOPBP1Q92547 1522 aa18.49■□□□□ 0.55
HERC1-210ENST00000560897 TOP2AP11388 1531 aaKnown RBP18.48■□□□□ 0.55
HERC1-210ENST00000560897 ABCC8Q09428 1581 aa18.45■□□□□ 0.54
HERC1-210ENST00000560897 AQRO60306 1485 aaKnown RBP eCLIP18.43■□□□□ 0.546e-7■■■■■ 29.2
HERC1-210ENST00000560897 DNMBPQ6XZF7 1577 aa18.38■□□□□ 0.53
HERC1-210ENST00000560897 TARBP1Q13395 1621 aaKnown RBP18.34■□□□□ 0.53
HERC1-210ENST00000560897 SYNJ1O43426 1573 aa18.32■□□□□ 0.52
HERC1-210ENST00000560897 CLASP1Q7Z460 1538 aa18.31■□□□□ 0.52
HERC1-210ENST00000560897 CHMP7Q8WUX9 453 aaPredicted RBP18.28■□□□□ 0.52
HERC1-210ENST00000560897 POLA1P09884 1462 aaPredicted RBP18.26■□□□□ 0.51
HERC1-210ENST00000560897 SNAPC4Q5SXM2 1469 aa18.26■□□□□ 0.51
HERC1-210ENST00000560897 CCDC88BA6NC98 1476 aa18.24■□□□□ 0.51
HERC1-210ENST00000560897 GAPVD1Q14C86 1478 aa18.21■□□□□ 0.51
HERC1-210ENST00000560897 TDRD9Q8NDG6 1382 aaKnown RBP18.21■□□□□ 0.51
HERC1-210ENST00000560897 WDR97A6NE52 1622 aa18.19■□□□□ 0.5
HERC1-210ENST00000560897 MAGI1Q96QZ7 1491 aaPredicted RBP18.19■□□□□ 0.5
HERC1-210ENST00000560897 RAD54L2Q9Y4B4 1467 aa18.19■□□□□ 0.5
HERC1-210ENST00000560897 SOGA1O94964 1423 aa18.16■□□□□ 0.5
HERC1-210ENST00000560897 SYNJ2O15056 1496 aa18.13■□□□□ 0.49
HERC1-210ENST00000560897 ILDR1Q86SU0 546 aaPredicted RBP18.11■□□□□ 0.49
HERC1-210ENST00000560897 GRIN2BQ13224 1484 aa18.11■□□□□ 0.49
HERC1-210ENST00000560897 FGD5Q6ZNL6 1462 aa18.05■□□□□ 0.48
HERC1-210ENST00000560897 PBRM1Q86U86 1689 aa18■□□□□ 0.47
HERC1-210ENST00000560897 KIF13AQ9H1H9 1805 aa17.99■□□□□ 0.47
HERC1-210ENST00000560897 ERCC6L2Q5T890 1561 aa17.95■□□□□ 0.46
HERC1-210ENST00000560897 CEP170Q5SW79 1584 aa17.9■□□□□ 0.46
HERC1-210ENST00000560897 CUX1P39880 1505 aa17.88■□□□□ 0.45
HERC1-210ENST00000560897 KDM4FA0A1W2PPD8 638 aa17.87■□□□□ 0.45
HERC1-210ENST00000560897 GRIN2AQ12879 1464 aa17.87■□□□□ 0.45
HERC1-210ENST00000560897 FAM69CQ0P6D2 419 aa17.86■□□□□ 0.45
HERC1-210ENST00000560897 KDM6BO15054 1643 aa17.83■□□□□ 0.45
HERC1-210ENST00000560897 ABCA5Q8WWZ7 1642 aa17.83■□□□□ 0.44
HERC1-210ENST00000560897 NPM1P06748 294 aaKnown RBP eCLIP17.81■□□□□ 0.44
HERC1-210ENST00000560897 ABCC10Q5T3U5 1492 aa17.81■□□□□ 0.44
HERC1-210ENST00000560897 NUP160Q12769 1436 aa17.81■□□□□ 0.44
HERC1-210ENST00000560897 SHROOM2Q13796 1616 aa17.8■□□□□ 0.44
HERC1-210ENST00000560897 ABCA10Q8WWZ4 1543 aa17.79■□□□□ 0.44
HERC1-210ENST00000560897 ADAMTS12P58397 1594 aa17.77■□□□□ 0.44
HERC1-210ENST00000560897 DIP2BQ9P265 1576 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms