RNA–Protein interactions for RNA: ENST00000560825.5

GABPB1-210, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,412 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-210ENST00000560825 NISCHQ9Y2I1 1504 aa28.05■■■□□ 2.08
GABPB1-210ENST00000560825 CCDC180Q9P1Z9 1646 aa25.09■■□□□ 1.61
GABPB1-210ENST00000560825 ABCC9O60706 1549 aa24.93■■□□□ 1.58
GABPB1-210ENST00000560825 AEBP2Q6ZN18 517 aaPredicted RBP24.45■■□□□ 1.51
GABPB1-210ENST00000560825 RB1CC1Q8TDY2 1594 aa23.73■■□□□ 1.39
GABPB1-210ENST00000560825 NACADO15069 1562 aa23.59■■□□□ 1.37
GABPB1-210ENST00000560825 DCAF8L2P0C7V8 631 aa23.52■■□□□ 1.36
GABPB1-210ENST00000560825 UNC13AQ9UPW8 1703 aa23.48■■□□□ 1.35
GABPB1-210ENST00000560825 ZCCHC6Q5VYS8 1495 aaKnown RBP23.3■■□□□ 1.32
GABPB1-210ENST00000560825 DNAJC5BQ9UF47 199 aa23.28■■□□□ 1.32
GABPB1-210ENST00000560825 MYO15BQ96JP2 1530 aa23.28■■□□□ 1.32
GABPB1-210ENST00000560825 PABPN1Q86U42 306 aaKnown RBP eCLIP23.23■■□□□ 1.31
GABPB1-210ENST00000560825 BICRAQ9NZM4 1560 aa23.2■■□□□ 1.3
GABPB1-210ENST00000560825 DCAF1Q9Y4B6 1507 aa23.1■■□□□ 1.29
GABPB1-210ENST00000560825 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
GABPB1-210ENST00000560825 SCRIBQ14160 1630 aa22.96■■□□□ 1.27
GABPB1-210ENST00000560825 SHROOM4Q9ULL8 1493 aa22.61■■□□□ 1.21
GABPB1-210ENST00000560825 CC2D2AQ9P2K1 1620 aa22.56■■□□□ 1.2
GABPB1-210ENST00000560825 EIF4G1Q04637 1599 aaKnown RBP22.52■■□□□ 1.2
GABPB1-210ENST00000560825 CECR2Q9BXF3 1484 aa22.37■■□□□ 1.17
GABPB1-210ENST00000560825 SMARCA4P51532 1647 aa21.89■■□□□ 1.09
GABPB1-210ENST00000560825 ATAD2BQ9ULI0 1458 aa21.79■■□□□ 1.08
GABPB1-210ENST00000560825 NCAPD3P42695 1498 aa21.78■■□□□ 1.08
GABPB1-210ENST00000560825 BAZ1AQ9NRL2 1556 aaPredicted RBP21.71■■□□□ 1.07
GABPB1-210ENST00000560825 MROH2BQ7Z745 1585 aa21.69■■□□□ 1.06
GABPB1-210ENST00000560825 SMARCA2P51531 1590 aa21.68■■□□□ 1.06
GABPB1-210ENST00000560825 HMGXB3Q12766 1538 aa21.66■■□□□ 1.06
GABPB1-210ENST00000560825 PEG3Q9GZU2 1588 aa21.62■■□□□ 1.05
GABPB1-210ENST00000560825 BAZ1BQ9UIG0 1483 aaKnown RBP21.56■■□□□ 1.04
GABPB1-210ENST00000560825 NESP48681 1621 aa21.55■■□□□ 1.04
GABPB1-210ENST00000560825 WIZO95785 1651 aa21.5■■□□□ 1.03
GABPB1-210ENST00000560825 ERCC6Q03468 1493 aa21.39■■□□□ 1.02
GABPB1-210ENST00000560825 KIF21AQ7Z4S6 1674 aa21.32■■□□□ 1
GABPB1-210ENST00000560825 LAMC3Q9Y6N6 1575 aa21.28■■□□□ 1
GABPB1-210ENST00000560825 THOC2Q8NI27 1593 aaKnown RBP21.27■■□□□ 1
GABPB1-210ENST00000560825 CUX2O14529 1486 aa21.26■□□□□ 0.99
GABPB1-210ENST00000560825 RSF1Q96T23 1441 aaPredicted RBP21.25■□□□□ 0.99
GABPB1-210ENST00000560825 SENP3Q9H4L4 574 aaPredicted RBP21.12■□□□□ 0.97
GABPB1-210ENST00000560825 CADPSQ9ULU8 1353 aa21.12■□□□□ 0.97
GABPB1-210ENST00000560825 TOP2AP11388 1531 aaKnown RBP21.11■□□□□ 0.97
GABPB1-210ENST00000560825 PDS5BQ9NTI5 1447 aa21.05■□□□□ 0.96
GABPB1-210ENST00000560825 DNAJC5Q9H3Z4 198 aa21.04■□□□□ 0.96
GABPB1-210ENST00000560825 CFTRP13569 1480 aa20.95■□□□□ 0.94
GABPB1-210ENST00000560825 WDR62O43379 1518 aa20.95■□□□□ 0.94
GABPB1-210ENST00000560825 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
GABPB1-210ENST00000560825 FANCD2Q9BXW9 1451 aa20.92■□□□□ 0.94
GABPB1-210ENST00000560825 PRDM2Q13029 1718 aa20.9■□□□□ 0.94
GABPB1-210ENST00000560825 CCDC88BA6NC98 1476 aa20.9■□□□□ 0.94
GABPB1-210ENST00000560825 CEP164Q9UPV0 1460 aa20.9■□□□□ 0.94
GABPB1-210ENST00000560825 URB2Q14146 1524 aaKnown RBP20.83■□□□□ 0.92
GABPB1-210ENST00000560825 PHF23Q9BUL5 403 aaPredicted RBP20.66■□□□□ 0.9
GABPB1-210ENST00000560825 TOPBP1Q92547 1522 aa20.59■□□□□ 0.89
GABPB1-210ENST00000560825 ZNF608Q9ULD9 1512 aaPredicted RBP20.55■□□□□ 0.88
GABPB1-210ENST00000560825 DNMBPQ6XZF7 1577 aa20.51■□□□□ 0.87
GABPB1-210ENST00000560825 TARBP1Q13395 1621 aaKnown RBP20.46■□□□□ 0.87
GABPB1-210ENST00000560825 EIF4G3O43432 1585 aaKnown RBP20.45■□□□□ 0.86
GABPB1-210ENST00000560825 IFT140Q96RY7 1462 aa20.44■□□□□ 0.86
GABPB1-210ENST00000560825 SUPT5HO00267 1087 aaKnown RBP20.44■□□□□ 0.86
GABPB1-210ENST00000560825 POLA1P09884 1462 aaPredicted RBP20.39■□□□□ 0.85
GABPB1-210ENST00000560825 ABCC8Q09428 1581 aa20.38■□□□□ 0.85
GABPB1-210ENST00000560825 RAD54L2Q9Y4B4 1467 aa20.36■□□□□ 0.85
GABPB1-210ENST00000560825 CUX1P39880 1505 aa20.36■□□□□ 0.85
GABPB1-210ENST00000560825 AQRO60306 1485 aaKnown RBP eCLIP20.34■□□□□ 0.85
GABPB1-210ENST00000560825 CHD1O14646 1710 aa20.32■□□□□ 0.84
GABPB1-210ENST00000560825 FGD5Q6ZNL6 1462 aa20.29■□□□□ 0.84
GABPB1-210ENST00000560825 OSCARQ8IYS5 282 aa20.28■□□□□ 0.84
GABPB1-210ENST00000560825 WDR97A6NE52 1622 aa20.25■□□□□ 0.83
GABPB1-210ENST00000560825 TRIM41Q8WV44 630 aa20.25■□□□□ 0.83
GABPB1-210ENST00000560825 SOGA1O94964 1423 aa20.23■□□□□ 0.83
GABPB1-210ENST00000560825 TDRD9Q8NDG6 1382 aaKnown RBP20.23■□□□□ 0.83
GABPB1-210ENST00000560825 RIMBP3CA6NJZ7 1639 aa20.21■□□□□ 0.83
GABPB1-210ENST00000560825 RIMBP3BA6NNM3 1639 aa20.21■□□□□ 0.83
GABPB1-210ENST00000560825 RIMBP3Q9UFD9 1639 aa20.21■□□□□ 0.83
GABPB1-210ENST00000560825 PBRM1Q86U86 1689 aa20.13■□□□□ 0.81
GABPB1-210ENST00000560825 SNAPC4Q5SXM2 1469 aa20.12■□□□□ 0.81
GABPB1-210ENST00000560825 SYNJ1O43426 1573 aa20.12■□□□□ 0.81
GABPB1-210ENST00000560825 ARHGEF11O15085 1522 aa20.11■□□□□ 0.81
GABPB1-210ENST00000560825 BIVM-ERCC5R4GMW8 1640 aa20.08■□□□□ 0.81
GABPB1-210ENST00000560825 ABCA5Q8WWZ7 1642 aa20.08■□□□□ 0.8
GABPB1-210ENST00000560825 FBLN2P98095 1184 aa20.07■□□□□ 0.8
GABPB1-210ENST00000560825 TOP2BQ02880 1626 aa20.04■□□□□ 0.8
GABPB1-210ENST00000560825 ABCA10Q8WWZ4 1543 aa20.03■□□□□ 0.8
GABPB1-210ENST00000560825 GRIN2BQ13224 1484 aa20.02■□□□□ 0.79
GABPB1-210ENST00000560825 GAPVD1Q14C86 1478 aa20■□□□□ 0.79
GABPB1-210ENST00000560825 CLASP1Q7Z460 1538 aa20■□□□□ 0.79
GABPB1-210ENST00000560825 MAGI1Q96QZ7 1491 aaPredicted RBP19.99■□□□□ 0.79
GABPB1-210ENST00000560825 WRNQ14191 1432 aaPredicted RBP eCLIP19.98■□□□□ 0.79
GABPB1-210ENST00000560825 ARAP1Q96P48 1450 aa19.95■□□□□ 0.78
GABPB1-210ENST00000560825 SYNJ2O15056 1496 aa19.94■□□□□ 0.78
GABPB1-210ENST00000560825 CHMP7Q8WUX9 453 aaPredicted RBP19.9■□□□□ 0.78
GABPB1-210ENST00000560825 ADAMTS12P58397 1594 aa19.89■□□□□ 0.77
GABPB1-210ENST00000560825 CYB5RLQ6IPT4 315 aa19.88■□□□□ 0.77
GABPB1-210ENST00000560825 CEP170Q5SW79 1584 aa19.83■□□□□ 0.77
GABPB1-210ENST00000560825 ERCC6L2Q5T890 1561 aa19.82■□□□□ 0.76
GABPB1-210ENST00000560825 GRIN2AQ12879 1464 aa19.81■□□□□ 0.76
GABPB1-210ENST00000560825 ERICH3Q5RHP9 1530 aa19.76■□□□□ 0.75
GABPB1-210ENST00000560825 NUP160Q12769 1436 aa19.73■□□□□ 0.75
GABPB1-210ENST00000560825 FHAD1B1AJZ9 1412 aa19.72■□□□□ 0.75
GABPB1-210ENST00000560825 SHROOM2Q13796 1616 aa19.71■□□□□ 0.75
GABPB1-210ENST00000560825 RUSC2Q8N2Y8 1516 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 158.6 ms