RNA–Protein interactions for RNA: ENST00000560716.1

APH1B-209, Transcript of aph-1 homolog B, gamma-secretase subunit, humanhuman

TSL 3

Gene APH1B, Length 731 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APH1B-209ENST00000560716 NISCHQ9Y2I1 1504 aa19.44■□□□□ 0.7
APH1B-209ENST00000560716 ABCC9O60706 1549 aa17.74■□□□□ 0.43
APH1B-209ENST00000560716 CCDC180Q9P1Z9 1646 aa17.71■□□□□ 0.43
APH1B-209ENST00000560716 DNAJC5BQ9UF47 199 aa16.95■□□□□ 0.3
APH1B-209ENST00000560716 RB1CC1Q8TDY2 1594 aa16.91■□□□□ 0.3
APH1B-209ENST00000560716 NACADO15069 1562 aa16.77■□□□□ 0.27
APH1B-209ENST00000560716 AEBP2Q6ZN18 517 aaPredicted RBP16.73■□□□□ 0.27
APH1B-209ENST00000560716 CHIC1Q5VXU3 224 aa16.63■□□□□ 0.25
APH1B-209ENST00000560716 UNC13AQ9UPW8 1703 aa16.61■□□□□ 0.25
APH1B-209ENST00000560716 MYO15BQ96JP2 1530 aa16.54■□□□□ 0.24
APH1B-209ENST00000560716 BICRAQ9NZM4 1560 aa16.46■□□□□ 0.23
APH1B-209ENST00000560716 PABPN1Q86U42 306 aaKnown RBP eCLIP16.38■□□□□ 0.21
APH1B-209ENST00000560716 SHROOM4Q9ULL8 1493 aa16.31■□□□□ 0.2
APH1B-209ENST00000560716 DCAF8L2P0C7V8 631 aa16.19■□□□□ 0.18
APH1B-209ENST00000560716 DCAF1Q9Y4B6 1507 aa16.18■□□□□ 0.18
APH1B-209ENST00000560716 CC2D2AQ9P2K1 1620 aa16.13■□□□□ 0.17
APH1B-209ENST00000560716 CECR2Q9BXF3 1484 aa16.08■□□□□ 0.16
APH1B-209ENST00000560716 ZCCHC6Q5VYS8 1495 aaKnown RBP16.05■□□□□ 0.16
APH1B-209ENST00000560716 EIF4G1Q04637 1599 aaKnown RBP16.04■□□□□ 0.16
APH1B-209ENST00000560716 SCRIBQ14160 1630 aa15.89■□□□□ 0.13
APH1B-209ENST00000560716 DNAJC5Q9H3Z4 198 aa15.87■□□□□ 0.13
APH1B-209ENST00000560716 CUX2O14529 1486 aa15.59■□□□□ 0.09
APH1B-209ENST00000560716 NCAPD3P42695 1498 aa15.46■□□□□ 0.07
APH1B-209ENST00000560716 HMGXB3Q12766 1538 aa15.33■□□□□ 0.05
APH1B-209ENST00000560716 ERCC6Q03468 1493 aa15.33■□□□□ 0.04
APH1B-209ENST00000560716 ATAD2BQ9ULI0 1458 aa15.31■□□□□ 0.04
APH1B-209ENST00000560716 SMARCA2P51531 1590 aa15.28■□□□□ 0.04
APH1B-209ENST00000560716 SMARCA4P51532 1647 aa15.24■□□□□ 0.03
APH1B-209ENST00000560716 THOC2Q8NI27 1593 aaKnown RBP15.22■□□□□ 0.03
APH1B-209ENST00000560716 PEG3Q9GZU2 1588 aa15.2■□□□□ 0.02
APH1B-209ENST00000560716 NESP48681 1621 aa15.17■□□□□ 0.02
APH1B-209ENST00000560716 LAMC3Q9Y6N6 1575 aa15.17■□□□□ 0.02
APH1B-209ENST00000560716 BAZ1AQ9NRL2 1556 aaPredicted RBP15.11■□□□□ 0.01
APH1B-209ENST00000560716 BAZ1BQ9UIG0 1483 aaKnown RBP15.09■□□□□ 0.01
APH1B-209ENST00000560716 KIF21AQ7Z4S6 1674 aa15.07■□□□□ 0
APH1B-209ENST00000560716 PDS5BQ9NTI5 1447 aa15.01□□□□□ -0.01
APH1B-209ENST00000560716 WDR62O43379 1518 aa14.94□□□□□ -0.02
APH1B-209ENST00000560716 MROH2BQ7Z745 1585 aa14.92□□□□□ -0.02
APH1B-209ENST00000560716 MRC2Q9UBG0 1479 aa14.9□□□□□ -0.02
APH1B-209ENST00000560716 CADPSQ9ULU8 1353 aa14.9□□□□□ -0.02
APH1B-209ENST00000560716 TRIM41Q8WV44 630 aa14.8□□□□□ -0.04
APH1B-209ENST00000560716 PHF23Q9BUL5 403 aaPredicted RBP14.77□□□□□ -0.05
APH1B-209ENST00000560716 CEP164Q9UPV0 1460 aa14.76□□□□□ -0.05
APH1B-209ENST00000560716 WIZO95785 1651 aa14.73□□□□□ -0.05
APH1B-209ENST00000560716 CFTRP13569 1480 aa14.71□□□□□ -0.05
APH1B-209ENST00000560716 FANCD2Q9BXW9 1451 aa14.7□□□□□ -0.06
APH1B-209ENST00000560716 OSCARQ8IYS5 282 aa14.7□□□□□ -0.06
APH1B-209ENST00000560716 PRDM2Q13029 1718 aa14.66□□□□□ -0.06
APH1B-209ENST00000560716 URB2Q14146 1524 aaKnown RBP14.62□□□□□ -0.07
APH1B-209ENST00000560716 RIMBP3CA6NJZ7 1639 aa14.61□□□□□ -0.07
APH1B-209ENST00000560716 RIMBP3BA6NNM3 1639 aa14.61□□□□□ -0.07
APH1B-209ENST00000560716 RIMBP3Q9UFD9 1639 aa14.61□□□□□ -0.07
APH1B-209ENST00000560716 TOP2AP11388 1531 aaKnown RBP14.56□□□□□ -0.08
APH1B-209ENST00000560716 ARHGEF11O15085 1522 aa14.51□□□□□ -0.09
APH1B-209ENST00000560716 IFT140Q96RY7 1462 aa14.5□□□□□ -0.09
APH1B-209ENST00000560716 RSF1Q96T23 1441 aaPredicted RBP14.49□□□□□ -0.09
APH1B-209ENST00000560716 ZNF608Q9ULD9 1512 aaPredicted RBP14.45□□□□□ -0.1
APH1B-209ENST00000560716 ABCC8Q09428 1581 aa14.44□□□□□ -0.1
APH1B-209ENST00000560716 EIF4G3O43432 1585 aaKnown RBP14.42□□□□□ -0.1
APH1B-209ENST00000560716 TOPBP1Q92547 1522 aa14.41□□□□□ -0.1
APH1B-209ENST00000560716 CHD1O14646 1710 aa14.39□□□□□ -0.11
APH1B-209ENST00000560716 TARBP1Q13395 1621 aaKnown RBP14.39□□□□□ -0.11
APH1B-209ENST00000560716 DNMBPQ6XZF7 1577 aa14.37□□□□□ -0.11
APH1B-209ENST00000560716 CCDC88BA6NC98 1476 aa14.35□□□□□ -0.11
APH1B-209ENST00000560716 ARAP1Q96P48 1450 aa14.34□□□□□ -0.11
APH1B-209ENST00000560716 WDR97A6NE52 1622 aa14.31□□□□□ -0.12
APH1B-209ENST00000560716 CYB5RLQ6IPT4 315 aa14.28□□□□□ -0.12
APH1B-209ENST00000560716 CLASP1Q7Z460 1538 aa14.25□□□□□ -0.13
APH1B-209ENST00000560716 AQRO60306 1485 aaKnown RBP eCLIP14.25□□□□□ -0.13
APH1B-209ENST00000560716 POLA1P09884 1462 aaPredicted RBP14.25□□□□□ -0.13
APH1B-209ENST00000560716 MAGI1Q96QZ7 1491 aaPredicted RBP14.17□□□□□ -0.14
APH1B-209ENST00000560716 SYNJ1O43426 1573 aa14.17□□□□□ -0.14
APH1B-209ENST00000560716 TRHP20396 242 aaPredicted RBP14.16□□□□□ -0.14
APH1B-209ENST00000560716 SOGA1O94964 1423 aa14.13□□□□□ -0.15
APH1B-209ENST00000560716 SNAPC4Q5SXM2 1469 aa14.12□□□□□ -0.15
APH1B-209ENST00000560716 RAD54L2Q9Y4B4 1467 aa14.12□□□□□ -0.15
APH1B-209ENST00000560716 SYNJ2O15056 1496 aa14.09□□□□□ -0.15
APH1B-209ENST00000560716 GRIN2BQ13224 1484 aa14.09□□□□□ -0.15
APH1B-209ENST00000560716 FGD5Q6ZNL6 1462 aa14.08□□□□□ -0.16
APH1B-209ENST00000560716 TDRD9Q8NDG6 1382 aaKnown RBP14.08□□□□□ -0.16
APH1B-209ENST00000560716 FBLN2P98095 1184 aa14.07□□□□□ -0.16
APH1B-209ENST00000560716 PBRM1Q86U86 1689 aa14.07□□□□□ -0.16
APH1B-209ENST00000560716 CUX1P39880 1505 aa14.05□□□□□ -0.16
APH1B-209ENST00000560716 GAPVD1Q14C86 1478 aa14.02□□□□□ -0.16
APH1B-209ENST00000560716 CHMP7Q8WUX9 453 aaPredicted RBP14.02□□□□□ -0.17
APH1B-209ENST00000560716 ABCA5Q8WWZ7 1642 aa14.01□□□□□ -0.17
APH1B-209ENST00000560716 ABCA10Q8WWZ4 1543 aa13.98□□□□□ -0.17
APH1B-209ENST00000560716 SHROOM2Q13796 1616 aa13.96□□□□□ -0.17
APH1B-209ENST00000560716 SENP3Q9H4L4 574 aaPredicted RBP13.94□□□□□ -0.18
APH1B-209ENST00000560716 KIF13AQ9H1H9 1805 aa13.94□□□□□ -0.18
APH1B-209ENST00000560716 NUP160Q12769 1436 aa13.92□□□□□ -0.18
APH1B-209ENST00000560716 GRIN2AQ12879 1464 aa13.91□□□□□ -0.18
APH1B-209ENST00000560716 ERCC6L2Q5T890 1561 aa13.91□□□□□ -0.18
APH1B-209ENST00000560716 CEP170Q5SW79 1584 aa13.9□□□□□ -0.18
APH1B-209ENST00000560716 ADAMTS12P58397 1594 aa13.89□□□□□ -0.19
APH1B-209ENST00000560716 BIVM-ERCC5R4GMW8 1640 aa13.83□□□□□ -0.2
APH1B-209ENST00000560716 ERICH3Q5RHP9 1530 aa13.81□□□□□ -0.2
APH1B-209ENST00000560716 FHAD1B1AJZ9 1412 aa13.81□□□□□ -0.2
APH1B-209ENST00000560716 TOP2BQ02880 1626 aa13.79□□□□□ -0.2
APH1B-209ENST00000560716 WRNQ14191 1432 aaPredicted RBP eCLIP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms