RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 NISCHQ9Y2I1 1504 aa23.38■■□□□ 1.33
VIPAS39-207ENST00000555854 AEBP2Q6ZN18 517 aaPredicted RBP21.3■■□□□ 1
VIPAS39-207ENST00000555854 CCDC180Q9P1Z9 1646 aa20.92■□□□□ 0.94
VIPAS39-207ENST00000555854 ABCC9O60706 1549 aa20.72■□□□□ 0.91
VIPAS39-207ENST00000555854 CHIC1Q5VXU3 224 aa19.9■□□□□ 0.78
VIPAS39-207ENST00000555854 RB1CC1Q8TDY2 1594 aa19.78■□□□□ 0.76
VIPAS39-207ENST00000555854 NACADO15069 1562 aa19.69■□□□□ 0.74
VIPAS39-207ENST00000555854 MYO15BQ96JP2 1530 aa19.51■□□□□ 0.71
VIPAS39-207ENST00000555854 ZCCHC6Q5VYS8 1495 aaKnown RBP19.47■□□□□ 0.71
VIPAS39-207ENST00000555854 DCAF8L2P0C7V8 631 aa19.46■□□□□ 0.71
VIPAS39-207ENST00000555854 UNC13AQ9UPW8 1703 aa19.42■□□□□ 0.7
VIPAS39-207ENST00000555854 DCAF1Q9Y4B6 1507 aa19.34■□□□□ 0.69
VIPAS39-207ENST00000555854 BICRAQ9NZM4 1560 aa19.3■□□□□ 0.68
VIPAS39-207ENST00000555854 DNAJC5BQ9UF47 199 aa19.29■□□□□ 0.68
VIPAS39-207ENST00000555854 PABPN1Q86U42 306 aaKnown RBP eCLIP19.27■□□□□ 0.68
VIPAS39-207ENST00000555854 SCRIBQ14160 1630 aa19.08■□□□□ 0.65
VIPAS39-207ENST00000555854 SHROOM4Q9ULL8 1493 aa18.99■□□□□ 0.63
VIPAS39-207ENST00000555854 EIF4G1Q04637 1599 aaKnown RBP18.76■□□□□ 0.59
VIPAS39-207ENST00000555854 CC2D2AQ9P2K1 1620 aa18.74■□□□□ 0.59
VIPAS39-207ENST00000555854 CECR2Q9BXF3 1484 aa18.63■□□□□ 0.57
VIPAS39-207ENST00000555854 SMARCA4P51532 1647 aa18.23■□□□□ 0.51
VIPAS39-207ENST00000555854 NCAPD3P42695 1498 aa18.19■□□□□ 0.5
VIPAS39-207ENST00000555854 ATAD2BQ9ULI0 1458 aa18.18■□□□□ 0.5
VIPAS39-207ENST00000555854 BAZ1AQ9NRL2 1556 aaPredicted RBP18.12■□□□□ 0.49
VIPAS39-207ENST00000555854 HMGXB3Q12766 1538 aa18.11■□□□□ 0.49
VIPAS39-207ENST00000555854 SMARCA2P51531 1590 aa18.09■□□□□ 0.49
VIPAS39-207ENST00000555854 PEG3Q9GZU2 1588 aa18.06■□□□□ 0.48
VIPAS39-207ENST00000555854 MROH2BQ7Z745 1585 aa18.05■□□□□ 0.48
VIPAS39-207ENST00000555854 BAZ1BQ9UIG0 1483 aaKnown RBP17.98■□□□□ 0.47
VIPAS39-207ENST00000555854 SENP3Q9H4L4 574 aaPredicted RBP17.95■□□□□ 0.46
VIPAS39-207ENST00000555854 NESP48681 1621 aa17.89■□□□□ 0.45
VIPAS39-207ENST00000555854 WIZO95785 1651 aa17.83■□□□□ 0.44
VIPAS39-207ENST00000555854 ERCC6Q03468 1493 aa17.82■□□□□ 0.44
VIPAS39-207ENST00000555854 PHF23Q9BUL5 403 aaPredicted RBP17.81■□□□□ 0.44
VIPAS39-207ENST00000555854 CUX2O14529 1486 aa17.77■□□□□ 0.44
VIPAS39-207ENST00000555854 LAMC3Q9Y6N6 1575 aa17.74■□□□□ 0.43
VIPAS39-207ENST00000555854 RSF1Q96T23 1441 aaPredicted RBP17.72■□□□□ 0.43
VIPAS39-207ENST00000555854 THOC2Q8NI27 1593 aaKnown RBP17.71■□□□□ 0.43
VIPAS39-207ENST00000555854 KIF21AQ7Z4S6 1674 aa17.66■□□□□ 0.42
VIPAS39-207ENST00000555854 CADPSQ9ULU8 1353 aa17.62■□□□□ 0.41
VIPAS39-207ENST00000555854 TOP2AP11388 1531 aaKnown RBP17.62■□□□□ 0.41
VIPAS39-207ENST00000555854 PDS5BQ9NTI5 1447 aa17.58■□□□□ 0.41
VIPAS39-207ENST00000555854 DNAJC5Q9H3Z4 198 aa17.5■□□□□ 0.39
VIPAS39-207ENST00000555854 CFTRP13569 1480 aa17.5■□□□□ 0.39
VIPAS39-207ENST00000555854 MRC2Q9UBG0 1479 aa17.49■□□□□ 0.39
VIPAS39-207ENST00000555854 WDR62O43379 1518 aa17.47■□□□□ 0.39
VIPAS39-207ENST00000555854 FANCD2Q9BXW9 1451 aa17.44■□□□□ 0.38
VIPAS39-207ENST00000555854 CEP164Q9UPV0 1460 aa17.44■□□□□ 0.38
VIPAS39-207ENST00000555854 CCDC88BA6NC98 1476 aa17.38■□□□□ 0.37
VIPAS39-207ENST00000555854 PRDM2Q13029 1718 aa17.35■□□□□ 0.37
VIPAS39-207ENST00000555854 URB2Q14146 1524 aaKnown RBP17.33■□□□□ 0.37
VIPAS39-207ENST00000555854 TOPBP1Q92547 1522 aa17.15■□□□□ 0.34
VIPAS39-207ENST00000555854 DNMBPQ6XZF7 1577 aa17.11■□□□□ 0.33
VIPAS39-207ENST00000555854 ZNF608Q9ULD9 1512 aaPredicted RBP17.09■□□□□ 0.33
VIPAS39-207ENST00000555854 IFT140Q96RY7 1462 aa17.08■□□□□ 0.32
VIPAS39-207ENST00000555854 ABCC8Q09428 1581 aa17.03■□□□□ 0.32
VIPAS39-207ENST00000555854 TARBP1Q13395 1621 aaKnown RBP17.02■□□□□ 0.31
VIPAS39-207ENST00000555854 EIF4G3O43432 1585 aaKnown RBP17.02■□□□□ 0.31
VIPAS39-207ENST00000555854 POLA1P09884 1462 aaPredicted RBP17■□□□□ 0.31
VIPAS39-207ENST00000555854 CUX1P39880 1505 aa16.95■□□□□ 0.3
VIPAS39-207ENST00000555854 SUPT5HO00267 1087 aaKnown RBP16.93■□□□□ 0.3
VIPAS39-207ENST00000555854 RAD54L2Q9Y4B4 1467 aa16.93■□□□□ 0.3
VIPAS39-207ENST00000555854 FOXD1Q16676 465 aa16.92■□□□□ 0.3
VIPAS39-207ENST00000555854 AQRO60306 1485 aaKnown RBP eCLIP16.91■□□□□ 0.33e-6■■■■■ 28.9
VIPAS39-207ENST00000555854 FGD5Q6ZNL6 1462 aa16.91■□□□□ 0.3
VIPAS39-207ENST00000555854 OSCARQ8IYS5 282 aa16.87■□□□□ 0.29
VIPAS39-207ENST00000555854 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
VIPAS39-207ENST00000555854 SOGA1O94964 1423 aa16.84■□□□□ 0.29
VIPAS39-207ENST00000555854 CHD1O14646 1710 aa16.83■□□□□ 0.28
VIPAS39-207ENST00000555854 TDRD9Q8NDG6 1382 aaKnown RBP16.81■□□□□ 0.28
VIPAS39-207ENST00000555854 RIMBP3CA6NJZ7 1639 aa16.78■□□□□ 0.28
VIPAS39-207ENST00000555854 RIMBP3BA6NNM3 1639 aa16.78■□□□□ 0.28
VIPAS39-207ENST00000555854 RIMBP3Q9UFD9 1639 aa16.78■□□□□ 0.28
VIPAS39-207ENST00000555854 SNAPC4Q5SXM2 1469 aa16.78■□□□□ 0.28
VIPAS39-207ENST00000555854 TRIM41Q8WV44 630 aa16.77■□□□□ 0.28
VIPAS39-207ENST00000555854 ARHGEF11O15085 1522 aa16.75■□□□□ 0.27
VIPAS39-207ENST00000555854 SYNJ1O43426 1573 aa16.73■□□□□ 0.27
VIPAS39-207ENST00000555854 ABCA10Q8WWZ4 1543 aa16.73■□□□□ 0.27
VIPAS39-207ENST00000555854 ABCA5Q8WWZ7 1642 aa16.73■□□□□ 0.27
VIPAS39-207ENST00000555854 BIVM-ERCC5R4GMW8 1640 aa16.72■□□□□ 0.27
VIPAS39-207ENST00000555854 GRIN2BQ13224 1484 aa16.71■□□□□ 0.27
VIPAS39-207ENST00000555854 TOP2BQ02880 1626 aa16.7■□□□□ 0.26
VIPAS39-207ENST00000555854 PBRM1Q86U86 1689 aa16.7■□□□□ 0.26
VIPAS39-207ENST00000555854 MAGI1Q96QZ7 1491 aaPredicted RBP16.7■□□□□ 0.26
VIPAS39-207ENST00000555854 CLASP1Q7Z460 1538 aa16.68■□□□□ 0.26
VIPAS39-207ENST00000555854 GAPVD1Q14C86 1478 aa16.67■□□□□ 0.26
VIPAS39-207ENST00000555854 WRNQ14191 1432 aaPredicted RBP eCLIP16.67■□□□□ 0.26
VIPAS39-207ENST00000555854 SYNJ2O15056 1496 aa16.65■□□□□ 0.26
VIPAS39-207ENST00000555854 FBLN2P98095 1184 aa16.63■□□□□ 0.25
VIPAS39-207ENST00000555854 ARAP1Q96P48 1450 aa16.62■□□□□ 0.25
VIPAS39-207ENST00000555854 ADAMTS12P58397 1594 aa16.6■□□□□ 0.25
VIPAS39-207ENST00000555854 CHMP7Q8WUX9 453 aaPredicted RBP16.55■□□□□ 0.24
VIPAS39-207ENST00000555854 GRIN2AQ12879 1464 aa16.52■□□□□ 0.23
VIPAS39-207ENST00000555854 CEP170Q5SW79 1584 aa16.5■□□□□ 0.23
VIPAS39-207ENST00000555854 ERICH3Q5RHP9 1530 aa16.5■□□□□ 0.23
VIPAS39-207ENST00000555854 NUP160Q12769 1436 aa16.48■□□□□ 0.23
VIPAS39-207ENST00000555854 CYB5RLQ6IPT4 315 aa16.48■□□□□ 0.23
VIPAS39-207ENST00000555854 FHAD1B1AJZ9 1412 aa16.46■□□□□ 0.23
VIPAS39-207ENST00000555854 ERCC6L2Q5T890 1561 aa16.45■□□□□ 0.22
VIPAS39-207ENST00000555854 SHROOM2Q13796 1616 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms