RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 NISCHQ9Y2I1 1504 aa22.71■■□□□ 1.23
LIMA1-211ENST00000552338 CCDC180Q9P1Z9 1646 aa20.06■□□□□ 0.8
LIMA1-211ENST00000552338 AEBP2Q6ZN18 517 aaPredicted RBP19.33■□□□□ 0.68
LIMA1-211ENST00000552338 ABCC9O60706 1549 aa19.03■□□□□ 0.64
LIMA1-211ENST00000552338 ZCCHC6Q5VYS8 1495 aaKnown RBP19.01■□□□□ 0.63
LIMA1-211ENST00000552338 DCAF1Q9Y4B6 1507 aa18.91■□□□□ 0.62
LIMA1-211ENST00000552338 MYO15BQ96JP2 1530 aa18.87■□□□□ 0.61
LIMA1-211ENST00000552338 NACADO15069 1562 aa18.74■□□□□ 0.59
LIMA1-211ENST00000552338 RB1CC1Q8TDY2 1594 aa18.61■□□□□ 0.57
LIMA1-211ENST00000552338 DCAF8L2P0C7V8 631 aa18.54■□□□□ 0.56
LIMA1-211ENST00000552338 CHIC1Q5VXU3 224 aa18.43■□□□□ 0.54
LIMA1-211ENST00000552338 UNC13AQ9UPW8 1703 aa18.24■□□□□ 0.51
LIMA1-211ENST00000552338 SCRIBQ14160 1630 aa18.16■□□□□ 0.5
LIMA1-211ENST00000552338 BICRAQ9NZM4 1560 aa18.06■□□□□ 0.48
LIMA1-211ENST00000552338 SHROOM4Q9ULL8 1493 aa18■□□□□ 0.47
LIMA1-211ENST00000552338 PABPN1Q86U42 306 aaKnown RBP eCLIP17.81■□□□□ 0.44
LIMA1-211ENST00000552338 CECR2Q9BXF3 1484 aa17.57■□□□□ 0.4
LIMA1-211ENST00000552338 BAZ1AQ9NRL2 1556 aaPredicted RBP17.57■□□□□ 0.4
LIMA1-211ENST00000552338 SMARCA4P51532 1647 aa17.51■□□□□ 0.39
LIMA1-211ENST00000552338 EIF4G1Q04637 1599 aaKnown RBP17.51■□□□□ 0.39
LIMA1-211ENST00000552338 MROH2BQ7Z745 1585 aa17.45■□□□□ 0.38
LIMA1-211ENST00000552338 PEG3Q9GZU2 1588 aa17.44■□□□□ 0.38
LIMA1-211ENST00000552338 RSF1Q96T23 1441 aaPredicted RBP17.43■□□□□ 0.38
LIMA1-211ENST00000552338 CC2D2AQ9P2K1 1620 aa17.32■□□□□ 0.36
LIMA1-211ENST00000552338 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
LIMA1-211ENST00000552338 ATAD2BQ9ULI0 1458 aa17.31■□□□□ 0.36
LIMA1-211ENST00000552338 NCAPD3P42695 1498 aa17.3■□□□□ 0.36
LIMA1-211ENST00000552338 WIZO95785 1651 aa17.29■□□□□ 0.36
LIMA1-211ENST00000552338 HMGXB3Q12766 1538 aa17.24■□□□□ 0.35
LIMA1-211ENST00000552338 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
LIMA1-211ENST00000552338 BAZ1BQ9UIG0 1483 aaKnown RBP17.14■□□□□ 0.33
LIMA1-211ENST00000552338 DNAJC5BQ9UF47 199 aa17.14■□□□□ 0.33
LIMA1-211ENST00000552338 SUPT5HO00267 1087 aaKnown RBP17.11■□□□□ 0.33
LIMA1-211ENST00000552338 CCDC88BA6NC98 1476 aa16.93■□□□□ 0.3
LIMA1-211ENST00000552338 CFTRP13569 1480 aa16.78■□□□□ 0.28
LIMA1-211ENST00000552338 LAMC3Q9Y6N6 1575 aa16.76■□□□□ 0.27
LIMA1-211ENST00000552338 CADPSQ9ULU8 1353 aa16.76■□□□□ 0.27
LIMA1-211ENST00000552338 PRDM2Q13029 1718 aa16.73■□□□□ 0.27
LIMA1-211ENST00000552338 NESP48681 1621 aa16.62■□□□□ 0.25
LIMA1-211ENST00000552338 SENP3Q9H4L4 574 aaPredicted RBP16.59■□□□□ 0.25
LIMA1-211ENST00000552338 PDS5BQ9NTI5 1447 aa16.58■□□□□ 0.24
LIMA1-211ENST00000552338 FANCD2Q9BXW9 1451 aa16.53■□□□□ 0.24
LIMA1-211ENST00000552338 KIF21AQ7Z4S6 1674 aa16.49■□□□□ 0.23
LIMA1-211ENST00000552338 CEP164Q9UPV0 1460 aa16.46■□□□□ 0.23
LIMA1-211ENST00000552338 ABCC8Q09428 1581 aa16.43■□□□□ 0.22
LIMA1-211ENST00000552338 WRNQ14191 1432 aaPredicted RBP eCLIP16.39■□□□□ 0.21
LIMA1-211ENST00000552338 BIVM-ERCC5R4GMW8 1640 aa16.38■□□□□ 0.21
LIMA1-211ENST00000552338 TOP2BQ02880 1626 aa16.37■□□□□ 0.21
LIMA1-211ENST00000552338 MRC2Q9UBG0 1479 aa16.36■□□□□ 0.21
LIMA1-211ENST00000552338 DNMBPQ6XZF7 1577 aa16.36■□□□□ 0.21
LIMA1-211ENST00000552338 THOC2Q8NI27 1593 aaKnown RBP16.36■□□□□ 0.21
LIMA1-211ENST00000552338 ERCC6Q03468 1493 aa16.35■□□□□ 0.21
LIMA1-211ENST00000552338 CUX1P39880 1505 aa16.35■□□□□ 0.21
LIMA1-211ENST00000552338 URB2Q14146 1524 aaKnown RBP16.35■□□□□ 0.21
LIMA1-211ENST00000552338 WDR62O43379 1518 aa16.34■□□□□ 0.21
LIMA1-211ENST00000552338 TOPBP1Q92547 1522 aa16.33■□□□□ 0.2
LIMA1-211ENST00000552338 SYNJ1O43426 1573 aa16.32■□□□□ 0.2
LIMA1-211ENST00000552338 PHF23Q9BUL5 403 aaPredicted RBP16.32■□□□□ 0.2
LIMA1-211ENST00000552338 POLA1P09884 1462 aaPredicted RBP16.22■□□□□ 0.19
LIMA1-211ENST00000552338 TRIM41Q8WV44 630 aa16.21■□□□□ 0.19
LIMA1-211ENST00000552338 FGD5Q6ZNL6 1462 aa16.21■□□□□ 0.19
LIMA1-211ENST00000552338 CUX2O14529 1486 aa16.18■□□□□ 0.18
LIMA1-211ENST00000552338 TARBP1Q13395 1621 aaKnown RBP16.16■□□□□ 0.18
LIMA1-211ENST00000552338 WDR97A6NE52 1622 aa16.15■□□□□ 0.18
LIMA1-211ENST00000552338 ABCA10Q8WWZ4 1543 aa16.14■□□□□ 0.18
LIMA1-211ENST00000552338 SOGA1O94964 1423 aa16.14■□□□□ 0.17
LIMA1-211ENST00000552338 IFT140Q96RY7 1462 aa16.14■□□□□ 0.17
LIMA1-211ENST00000552338 RAD54L2Q9Y4B4 1467 aa16.08■□□□□ 0.16
LIMA1-211ENST00000552338 EEA1Q15075 1411 aa16.05■□□□□ 0.16
LIMA1-211ENST00000552338 ABCA5Q8WWZ7 1642 aa16.04■□□□□ 0.16
LIMA1-211ENST00000552338 KIF27Q86VH2 1401 aa16.02■□□□□ 0.15
LIMA1-211ENST00000552338 ERICH3Q5RHP9 1530 aa15.97■□□□□ 0.15
LIMA1-211ENST00000552338 ZNF608Q9ULD9 1512 aaPredicted RBP15.97■□□□□ 0.15
LIMA1-211ENST00000552338 GAPVD1Q14C86 1478 aa15.97■□□□□ 0.15
LIMA1-211ENST00000552338 RUSC2Q8N2Y8 1516 aa15.96■□□□□ 0.15
LIMA1-211ENST00000552338 EIF4G3O43432 1585 aaKnown RBP15.96■□□□□ 0.14
LIMA1-211ENST00000552338 IGF1RP08069 1367 aa15.94■□□□□ 0.14
LIMA1-211ENST00000552338 TDRD9Q8NDG6 1382 aaKnown RBP15.94■□□□□ 0.14
LIMA1-211ENST00000552338 PBRM1Q86U86 1689 aa15.93■□□□□ 0.14
LIMA1-211ENST00000552338 AQRO60306 1485 aaKnown RBP eCLIP15.92■□□□□ 0.14
LIMA1-211ENST00000552338 GRIN2BQ13224 1484 aa15.92■□□□□ 0.14
LIMA1-211ENST00000552338 CSRNP3Q8WYN3 585 aa15.9■□□□□ 0.14
LIMA1-211ENST00000552338 CUL7Q14999 1698 aa15.89■□□□□ 0.13
LIMA1-211ENST00000552338 PRXQ9BXM0 1461 aa15.88■□□□□ 0.13
LIMA1-211ENST00000552338 MAGI1Q96QZ7 1491 aaPredicted RBP15.86■□□□□ 0.13
LIMA1-211ENST00000552338 KIF21BO75037 1637 aa15.84■□□□□ 0.13
LIMA1-211ENST00000552338 CARMIL1Q5VZK9 1371 aa15.82■□□□□ 0.12
LIMA1-211ENST00000552338 FHAD1B1AJZ9 1412 aa15.82■□□□□ 0.12
LIMA1-211ENST00000552338 ADAMTS12P58397 1594 aa15.81■□□□□ 0.12
LIMA1-211ENST00000552338 SNAPC4Q5SXM2 1469 aa15.79■□□□□ 0.12
LIMA1-211ENST00000552338 RAPGEF2Q9Y4G8 1499 aa15.78■□□□□ 0.12
LIMA1-211ENST00000552338 SYNJ2O15056 1496 aa15.78■□□□□ 0.12
LIMA1-211ENST00000552338 FAM9AQ8IZU1 332 aaPredicted RBP15.74■□□□□ 0.11
LIMA1-211ENST00000552338 GOLGA3Q08378 1498 aa15.71■□□□□ 0.11
LIMA1-211ENST00000552338 GRIN2AQ12879 1464 aa15.71■□□□□ 0.1
LIMA1-211ENST00000552338 CHD1O14646 1710 aa15.68■□□□□ 0.1
LIMA1-211ENST00000552338 NUP160Q12769 1436 aa15.67■□□□□ 0.1
LIMA1-211ENST00000552338 CHMP7Q8WUX9 453 aaPredicted RBP15.65■□□□□ 0.1
LIMA1-211ENST00000552338 TNIKQ9UKE5 1360 aa15.64■□□□□ 0.09
LIMA1-211ENST00000552338 CTTNBP2Q8WZ74 1663 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms