RNA–Protein interactions for RNA: ENST00000550442.5

LETMD1-223, Transcript of LETM1 domain containing 1, humanhuman

TSL 4

Gene LETMD1, Length 469 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-223ENST00000550442 NISCHQ9Y2I1 1504 aa25.91■■□□□ 1.74
LETMD1-223ENST00000550442 ABCC9O60706 1549 aa24.35■■□□□ 1.49
LETMD1-223ENST00000550442 CCDC180Q9P1Z9 1646 aa23.64■■□□□ 1.38
LETMD1-223ENST00000550442 DNAJC5BQ9UF47 199 aa23.46■■□□□ 1.35
LETMD1-223ENST00000550442 RB1CC1Q8TDY2 1594 aa22.89■■□□□ 1.25
LETMD1-223ENST00000550442 PABPN1Q86U42 306 aaKnown RBP eCLIP22.54■■□□□ 1.2
LETMD1-223ENST00000550442 NACADO15069 1562 aa22.52■■□□□ 1.2
LETMD1-223ENST00000550442 UNC13AQ9UPW8 1703 aa22.34■■□□□ 1.17
LETMD1-223ENST00000550442 DCAF8L2P0C7V8 631 aa22.26■■□□□ 1.15
LETMD1-223ENST00000550442 DNAJC5Q9H3Z4 198 aa22.19■■□□□ 1.14
LETMD1-223ENST00000550442 BICRAQ9NZM4 1560 aa22.17■■□□□ 1.14
LETMD1-223ENST00000550442 CECR2Q9BXF3 1484 aa22.04■■□□□ 1.12
LETMD1-223ENST00000550442 CC2D2AQ9P2K1 1620 aa21.97■■□□□ 1.11
LETMD1-223ENST00000550442 MYO15BQ96JP2 1530 aa21.93■■□□□ 1.1
LETMD1-223ENST00000550442 SHROOM4Q9ULL8 1493 aa21.86■■□□□ 1.09
LETMD1-223ENST00000550442 EIF4G1Q04637 1599 aaKnown RBP21.73■■□□□ 1.07
LETMD1-223ENST00000550442 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
LETMD1-223ENST00000550442 ZCCHC6Q5VYS8 1495 aaKnown RBP21.36■■□□□ 1.01
LETMD1-223ENST00000550442 DCAF1Q9Y4B6 1507 aa21.35■■□□□ 1.01
LETMD1-223ENST00000550442 CUX2O14529 1486 aa21.35■■□□□ 1.01
LETMD1-223ENST00000550442 ERCC6Q03468 1493 aa21.14■□□□□ 0.98
LETMD1-223ENST00000550442 TRIM41Q8WV44 630 aa20.93■□□□□ 0.94
LETMD1-223ENST00000550442 NCAPD3P42695 1498 aa20.76■□□□□ 0.91
LETMD1-223ENST00000550442 NESP48681 1621 aa20.68■□□□□ 0.9
LETMD1-223ENST00000550442 THOC2Q8NI27 1593 aaKnown RBP20.64■□□□□ 0.9
LETMD1-223ENST00000550442 ATAD2BQ9ULI0 1458 aa20.58■□□□□ 0.89
LETMD1-223ENST00000550442 HMGXB3Q12766 1538 aa20.57■□□□□ 0.88
LETMD1-223ENST00000550442 SMARCA2P51531 1590 aa20.54■□□□□ 0.88
LETMD1-223ENST00000550442 LAMC3Q9Y6N6 1575 aa20.46■□□□□ 0.87
LETMD1-223ENST00000550442 KIF21AQ7Z4S6 1674 aa20.44■□□□□ 0.86
LETMD1-223ENST00000550442 SMARCA4P51532 1647 aa20.39■□□□□ 0.86
LETMD1-223ENST00000550442 BAZ1BQ9UIG0 1483 aaKnown RBP20.39■□□□□ 0.85
LETMD1-223ENST00000550442 PDS5BQ9NTI5 1447 aa20.38■□□□□ 0.85
LETMD1-223ENST00000550442 BAZ1AQ9NRL2 1556 aaPredicted RBP20.3■□□□□ 0.84
LETMD1-223ENST00000550442 OSCARQ8IYS5 282 aa20.24■□□□□ 0.83
LETMD1-223ENST00000550442 MRC2Q9UBG0 1479 aa20.24■□□□□ 0.83
LETMD1-223ENST00000550442 SUPT5HO00267 1087 aaKnown RBP20.21■□□□□ 0.83
LETMD1-223ENST00000550442 WDR62O43379 1518 aa20.19■□□□□ 0.82
LETMD1-223ENST00000550442 PEG3Q9GZU2 1588 aa20.18■□□□□ 0.82
LETMD1-223ENST00000550442 CADPSQ9ULU8 1353 aa20.1■□□□□ 0.81
LETMD1-223ENST00000550442 RIMBP3CA6NJZ7 1639 aa20.05■□□□□ 0.8
LETMD1-223ENST00000550442 RIMBP3BA6NNM3 1639 aa20.05■□□□□ 0.8
LETMD1-223ENST00000550442 RIMBP3Q9UFD9 1639 aa20.05■□□□□ 0.8
LETMD1-223ENST00000550442 CEP164Q9UPV0 1460 aa20.01■□□□□ 0.79
LETMD1-223ENST00000550442 MROH2BQ7Z745 1585 aa19.93■□□□□ 0.78
LETMD1-223ENST00000550442 AEBP2Q6ZN18 517 aaPredicted RBP19.93■□□□□ 0.78
LETMD1-223ENST00000550442 ARHGEF11O15085 1522 aa19.9■□□□□ 0.78
LETMD1-223ENST00000550442 TRHP20396 242 aaPredicted RBP19.89■□□□□ 0.77
LETMD1-223ENST00000550442 FANCD2Q9BXW9 1451 aa19.89■□□□□ 0.77
LETMD1-223ENST00000550442 CYB5RLQ6IPT4 315 aa19.81■□□□□ 0.76
LETMD1-223ENST00000550442 RSF1Q96T23 1441 aaPredicted RBP19.78■□□□□ 0.76
LETMD1-223ENST00000550442 URB2Q14146 1524 aaKnown RBP19.75■□□□□ 0.75
LETMD1-223ENST00000550442 CHIC1Q5VXU3 224 aa19.74■□□□□ 0.75
LETMD1-223ENST00000550442 CFTRP13569 1480 aa19.7■□□□□ 0.74
LETMD1-223ENST00000550442 WIZO95785 1651 aa19.68■□□□□ 0.74
LETMD1-223ENST00000550442 ARAP1Q96P48 1450 aa19.64■□□□□ 0.73
LETMD1-223ENST00000550442 ZNF608Q9ULD9 1512 aaPredicted RBP19.63■□□□□ 0.73
LETMD1-223ENST00000550442 IFT140Q96RY7 1462 aa19.63■□□□□ 0.73
LETMD1-223ENST00000550442 CHD1O14646 1710 aa19.55■□□□□ 0.72
LETMD1-223ENST00000550442 EIF4G3O43432 1585 aaKnown RBP19.53■□□□□ 0.72
LETMD1-223ENST00000550442 PRDM2Q13029 1718 aa19.52■□□□□ 0.72
LETMD1-223ENST00000550442 FBLN2P98095 1184 aa19.46■□□□□ 0.71
LETMD1-223ENST00000550442 TOPBP1Q92547 1522 aa19.42■□□□□ 0.7
LETMD1-223ENST00000550442 TOP2AP11388 1531 aaKnown RBP19.39■□□□□ 0.69
LETMD1-223ENST00000550442 ABCC8Q09428 1581 aa19.37■□□□□ 0.69
LETMD1-223ENST00000550442 AQRO60306 1485 aaKnown RBP eCLIP19.36■□□□□ 0.699e-11■□□□□ 10.1
LETMD1-223ENST00000550442 DNMBPQ6XZF7 1577 aa19.3■□□□□ 0.68
LETMD1-223ENST00000550442 TARBP1Q13395 1621 aaKnown RBP19.29■□□□□ 0.68
LETMD1-223ENST00000550442 CLASP1Q7Z460 1538 aa19.26■□□□□ 0.67
LETMD1-223ENST00000550442 SYNJ1O43426 1573 aa19.23■□□□□ 0.67
LETMD1-223ENST00000550442 CHMP7Q8WUX9 453 aaPredicted RBP19.18■□□□□ 0.66
LETMD1-223ENST00000550442 SNAPC4Q5SXM2 1469 aa19.17■□□□□ 0.66
LETMD1-223ENST00000550442 POLA1P09884 1462 aaPredicted RBP19.16■□□□□ 0.66
LETMD1-223ENST00000550442 CCDC88BA6NC98 1476 aa19.15■□□□□ 0.66
LETMD1-223ENST00000550442 GAPVD1Q14C86 1478 aa19.14■□□□□ 0.65
LETMD1-223ENST00000550442 TDRD9Q8NDG6 1382 aaKnown RBP19.13■□□□□ 0.65
LETMD1-223ENST00000550442 WDR97A6NE52 1622 aa19.11■□□□□ 0.65
LETMD1-223ENST00000550442 MAGI1Q96QZ7 1491 aaPredicted RBP19.1■□□□□ 0.65
LETMD1-223ENST00000550442 RAD54L2Q9Y4B4 1467 aa19.09■□□□□ 0.65
LETMD1-223ENST00000550442 ILDR1Q86SU0 546 aaPredicted RBP19.09■□□□□ 0.65
LETMD1-223ENST00000550442 SOGA1O94964 1423 aa19.08■□□□□ 0.64
LETMD1-223ENST00000550442 SYNJ2O15056 1496 aa19.04■□□□□ 0.64
LETMD1-223ENST00000550442 GRIN2BQ13224 1484 aa19.02■□□□□ 0.63
LETMD1-223ENST00000550442 FGD5Q6ZNL6 1462 aa18.95■□□□□ 0.62
LETMD1-223ENST00000550442 KIF13AQ9H1H9 1805 aa18.95■□□□□ 0.62
LETMD1-223ENST00000550442 PBRM1Q86U86 1689 aa18.91■□□□□ 0.62
LETMD1-223ENST00000550442 EEA1Q15075 1411 aa18.89■□□□□ 0.61
LETMD1-223ENST00000550442 ERCC6L2Q5T890 1561 aa18.88■□□□□ 0.61
LETMD1-223ENST00000550442 KDM4FA0A1W2PPD8 638 aa18.83■□□□□ 0.6
LETMD1-223ENST00000550442 CEP170Q5SW79 1584 aa18.81■□□□□ 0.6
LETMD1-223ENST00000550442 LOC105371045A0A1W2PR82 267 aa18.81■□□□□ 0.6
LETMD1-223ENST00000550442 CUX1P39880 1505 aa18.78■□□□□ 0.6
LETMD1-223ENST00000550442 FAM69CQ0P6D2 419 aa18.76■□□□□ 0.59
LETMD1-223ENST00000550442 GRIN2AQ12879 1464 aa18.76■□□□□ 0.59
LETMD1-223ENST00000550442 KDM6BO15054 1643 aa18.74■□□□□ 0.59
LETMD1-223ENST00000550442 SHROOM2Q13796 1616 aa18.73■□□□□ 0.59
LETMD1-223ENST00000550442 ABCC10Q5T3U5 1492 aa18.72■□□□□ 0.59
LETMD1-223ENST00000550442 ABCA5Q8WWZ7 1642 aa18.72■□□□□ 0.59
LETMD1-223ENST00000550442 NUP160Q12769 1436 aa18.71■□□□□ 0.59
LETMD1-223ENST00000550442 NPM1P06748 294 aaKnown RBP eCLIP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms