RNA–Protein interactions for RNA: ENST00000547208.5

BEST3-208, Transcript of bestrophin 3, humanhuman

TSL 5

Gene BEST3, Length 1,187 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3-208ENST00000547208 NISCHQ9Y2I1 1504 aa25.76■■□□□ 1.71
BEST3-208ENST00000547208 CCDC180Q9P1Z9 1646 aa23.1■■□□□ 1.29
BEST3-208ENST00000547208 ABCC9O60706 1549 aa22.88■■□□□ 1.25
BEST3-208ENST00000547208 DNAJC5BQ9UF47 199 aa22■■□□□ 1.11
BEST3-208ENST00000547208 AEBP2Q6ZN18 517 aaPredicted RBP21.93■■□□□ 1.1
BEST3-208ENST00000547208 RB1CC1Q8TDY2 1594 aa21.79■■□□□ 1.08
BEST3-208ENST00000547208 NACADO15069 1562 aa21.71■■□□□ 1.07
BEST3-208ENST00000547208 MYO15BQ96JP2 1530 aa21.5■■□□□ 1.03
BEST3-208ENST00000547208 UNC13AQ9UPW8 1703 aa21.47■■□□□ 1.03
BEST3-208ENST00000547208 DCAF8L2P0C7V8 631 aa21.46■■□□□ 1.03
BEST3-208ENST00000547208 CHIC1Q5VXU3 224 aa21.45■■□□□ 1.02
BEST3-208ENST00000547208 ZCCHC6Q5VYS8 1495 aaKnown RBP21.41■■□□□ 1.02
BEST3-208ENST00000547208 PABPN1Q86U42 306 aaKnown RBP eCLIP21.33■■□□□ 1.01
BEST3-208ENST00000547208 DCAF1Q9Y4B6 1507 aa21.32■■□□□ 1
BEST3-208ENST00000547208 BICRAQ9NZM4 1560 aa21.22■□□□□ 0.99
BEST3-208ENST00000547208 SCRIBQ14160 1630 aa21■□□□□ 0.95
BEST3-208ENST00000547208 SHROOM4Q9ULL8 1493 aa20.9■□□□□ 0.94
BEST3-208ENST00000547208 EIF4G1Q04637 1599 aaKnown RBP20.63■□□□□ 0.89
BEST3-208ENST00000547208 CC2D2AQ9P2K1 1620 aa20.63■□□□□ 0.89
BEST3-208ENST00000547208 CECR2Q9BXF3 1484 aa20.55■□□□□ 0.88
BEST3-208ENST00000547208 DNAJC5Q9H3Z4 198 aa20.23■□□□□ 0.83
BEST3-208ENST00000547208 SMARCA4P51532 1647 aa20.08■□□□□ 0.8
BEST3-208ENST00000547208 NCAPD3P42695 1498 aa20.01■□□□□ 0.79
BEST3-208ENST00000547208 ATAD2BQ9ULI0 1458 aa19.99■□□□□ 0.79
BEST3-208ENST00000547208 BAZ1AQ9NRL2 1556 aaPredicted RBP19.98■□□□□ 0.79
BEST3-208ENST00000547208 SMARCA2P51531 1590 aa19.95■□□□□ 0.78
BEST3-208ENST00000547208 HMGXB3Q12766 1538 aa19.92■□□□□ 0.78
BEST3-208ENST00000547208 PEG3Q9GZU2 1588 aa19.9■□□□□ 0.78
BEST3-208ENST00000547208 MROH2BQ7Z745 1585 aa19.86■□□□□ 0.77
BEST3-208ENST00000547208 BAZ1BQ9UIG0 1483 aaKnown RBP19.79■□□□□ 0.76
BEST3-208ENST00000547208 WIZO95785 1651 aa19.67■□□□□ 0.74
BEST3-208ENST00000547208 CUX2O14529 1486 aa19.64■□□□□ 0.73
BEST3-208ENST00000547208 NESP48681 1621 aa19.64■□□□□ 0.73
BEST3-208ENST00000547208 ERCC6Q03468 1493 aa19.61■□□□□ 0.73
BEST3-208ENST00000547208 LAMC3Q9Y6N6 1575 aa19.56■□□□□ 0.72
BEST3-208ENST00000547208 RSF1Q96T23 1441 aaPredicted RBP19.5■□□□□ 0.71
BEST3-208ENST00000547208 KIF21AQ7Z4S6 1674 aa19.49■□□□□ 0.71
BEST3-208ENST00000547208 THOC2Q8NI27 1593 aaKnown RBP19.46■□□□□ 0.71
BEST3-208ENST00000547208 TOP2AP11388 1531 aaKnown RBP19.41■□□□□ 0.7
BEST3-208ENST00000547208 CADPSQ9ULU8 1353 aa19.38■□□□□ 0.69
BEST3-208ENST00000547208 PDS5BQ9NTI5 1447 aa19.35■□□□□ 0.69
BEST3-208ENST00000547208 TRIM41Q8WV44 630 aa19.29■□□□□ 0.68
BEST3-208ENST00000547208 CFTRP13569 1480 aa19.25■□□□□ 0.67
BEST3-208ENST00000547208 PRDM2Q13029 1718 aa19.23■□□□□ 0.67
BEST3-208ENST00000547208 MRC2Q9UBG0 1479 aa19.22■□□□□ 0.67
BEST3-208ENST00000547208 WDR62O43379 1518 aa19.21■□□□□ 0.67
BEST3-208ENST00000547208 FANCD2Q9BXW9 1451 aa19.18■□□□□ 0.66
BEST3-208ENST00000547208 CEP164Q9UPV0 1460 aa19.18■□□□□ 0.66
BEST3-208ENST00000547208 CCDC88BA6NC98 1476 aa19.15■□□□□ 0.66
BEST3-208ENST00000547208 URB2Q14146 1524 aaKnown RBP19.05■□□□□ 0.64
BEST3-208ENST00000547208 TOPBP1Q92547 1522 aa18.87■□□□□ 0.61
BEST3-208ENST00000547208 DNMBPQ6XZF7 1577 aa18.84■□□□□ 0.61
BEST3-208ENST00000547208 PHF23Q9BUL5 403 aaPredicted RBP18.83■□□□□ 0.6
BEST3-208ENST00000547208 ABCC8Q09428 1581 aa18.81■□□□□ 0.6
BEST3-208ENST00000547208 IFT140Q96RY7 1462 aa18.78■□□□□ 0.6
BEST3-208ENST00000547208 ZNF608Q9ULD9 1512 aaPredicted RBP18.76■□□□□ 0.59
BEST3-208ENST00000547208 OSCARQ8IYS5 282 aa18.75■□□□□ 0.59
BEST3-208ENST00000547208 TARBP1Q13395 1621 aaKnown RBP18.74■□□□□ 0.59
BEST3-208ENST00000547208 EIF4G3O43432 1585 aaKnown RBP18.72■□□□□ 0.59
BEST3-208ENST00000547208 POLA1P09884 1462 aaPredicted RBP18.69■□□□□ 0.58
BEST3-208ENST00000547208 SUPT5HO00267 1087 aaKnown RBP18.68■□□□□ 0.58
BEST3-208ENST00000547208 SENP3Q9H4L4 574 aaPredicted RBP18.68■□□□□ 0.58
BEST3-208ENST00000547208 RIMBP3CA6NJZ7 1639 aa18.67■□□□□ 0.58
BEST3-208ENST00000547208 RIMBP3BA6NNM3 1639 aa18.67■□□□□ 0.58
BEST3-208ENST00000547208 RIMBP3Q9UFD9 1639 aa18.67■□□□□ 0.58
BEST3-208ENST00000547208 CUX1P39880 1505 aa18.65■□□□□ 0.58
BEST3-208ENST00000547208 FGD5Q6ZNL6 1462 aa18.6■□□□□ 0.57
BEST3-208ENST00000547208 RAD54L2Q9Y4B4 1467 aa18.59■□□□□ 0.57
BEST3-208ENST00000547208 CHD1O14646 1710 aa18.58■□□□□ 0.57
BEST3-208ENST00000547208 WDR97A6NE52 1622 aa18.58■□□□□ 0.56
BEST3-208ENST00000547208 AQRO60306 1485 aaKnown RBP eCLIP18.58■□□□□ 0.56
BEST3-208ENST00000547208 SOGA1O94964 1423 aa18.55■□□□□ 0.56
BEST3-208ENST00000547208 ARHGEF11O15085 1522 aa18.52■□□□□ 0.56
BEST3-208ENST00000547208 TDRD9Q8NDG6 1382 aaKnown RBP18.48■□□□□ 0.55
BEST3-208ENST00000547208 CYB5RLQ6IPT4 315 aa18.48■□□□□ 0.55
BEST3-208ENST00000547208 BIVM-ERCC5R4GMW8 1640 aa18.46■□□□□ 0.55
BEST3-208ENST00000547208 PBRM1Q86U86 1689 aa18.46■□□□□ 0.55
BEST3-208ENST00000547208 TOP2BQ02880 1626 aa18.43■□□□□ 0.54
BEST3-208ENST00000547208 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
BEST3-208ENST00000547208 ABCA5Q8WWZ7 1642 aa18.42■□□□□ 0.54
BEST3-208ENST00000547208 SNAPC4Q5SXM2 1469 aa18.42■□□□□ 0.54
BEST3-208ENST00000547208 ABCA10Q8WWZ4 1543 aa18.41■□□□□ 0.54
BEST3-208ENST00000547208 GRIN2BQ13224 1484 aa18.39■□□□□ 0.53
BEST3-208ENST00000547208 MAGI1Q96QZ7 1491 aaPredicted RBP18.39■□□□□ 0.53
BEST3-208ENST00000547208 ARAP1Q96P48 1450 aa18.37■□□□□ 0.53
BEST3-208ENST00000547208 WRNQ14191 1432 aaPredicted RBP eCLIP18.36■□□□□ 0.53
BEST3-208ENST00000547208 GAPVD1Q14C86 1478 aa18.36■□□□□ 0.53
BEST3-208ENST00000547208 TRHP20396 242 aaPredicted RBP18.34■□□□□ 0.53
BEST3-208ENST00000547208 CLASP1Q7Z460 1538 aa18.33■□□□□ 0.52
BEST3-208ENST00000547208 SYNJ2O15056 1496 aa18.32■□□□□ 0.52
BEST3-208ENST00000547208 FBLN2P98095 1184 aa18.31■□□□□ 0.52
BEST3-208ENST00000547208 ADAMTS12P58397 1594 aa18.25■□□□□ 0.51
BEST3-208ENST00000547208 CHMP7Q8WUX9 453 aaPredicted RBP18.24■□□□□ 0.51
BEST3-208ENST00000547208 ERICH3Q5RHP9 1530 aa18.19■□□□□ 0.5
BEST3-208ENST00000547208 GRIN2AQ12879 1464 aa18.18■□□□□ 0.5
BEST3-208ENST00000547208 CEP170Q5SW79 1584 aa18.14■□□□□ 0.49
BEST3-208ENST00000547208 FHAD1B1AJZ9 1412 aa18.13■□□□□ 0.49
BEST3-208ENST00000547208 NUP160Q12769 1436 aa18.12■□□□□ 0.49
BEST3-208ENST00000547208 SHROOM2Q13796 1616 aa18.08■□□□□ 0.48
BEST3-208ENST00000547208 ERCC6L2Q5T890 1561 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms