RNA–Protein interactions for RNA: ENST00000545367.5

NPIPB4-221, Transcript of nuclear pore complex interacting protein family member B4, humanhuman

TSL 2

Gene NPIPB4, Length 846 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB4-221ENST00000545367 AEBP2Q6ZN18 517 aaPredicted RBP23.46■■□□□ 1.35
NPIPB4-221ENST00000545367 CHIC1Q5VXU3 224 aa22.89■■□□□ 1.25
NPIPB4-221ENST00000545367 NISCHQ9Y2I1 1504 aa22.26■■□□□ 1.15
NPIPB4-221ENST00000545367 ABCC9O60706 1549 aa20.64■□□□□ 0.9
NPIPB4-221ENST00000545367 CCDC180Q9P1Z9 1646 aa20.34■□□□□ 0.85
NPIPB4-221ENST00000545367 PHF23Q9BUL5 403 aaPredicted RBP20.04■□□□□ 0.8
NPIPB4-221ENST00000545367 SENP3Q9H4L4 574 aaPredicted RBP20.04■□□□□ 0.8
NPIPB4-221ENST00000545367 DNAJC5BQ9UF47 199 aa19.58■□□□□ 0.72
NPIPB4-221ENST00000545367 RB1CC1Q8TDY2 1594 aa19.49■□□□□ 0.71
NPIPB4-221ENST00000545367 UNC13AQ9UPW8 1703 aa19.23■□□□□ 0.67
NPIPB4-221ENST00000545367 NACADO15069 1562 aa19.2■□□□□ 0.66
NPIPB4-221ENST00000545367 PABPN1Q86U42 306 aaKnown RBP eCLIP19.02■□□□□ 0.64
NPIPB4-221ENST00000545367 BICRAQ9NZM4 1560 aa18.95■□□□□ 0.62
NPIPB4-221ENST00000545367 DCAF8L2P0C7V8 631 aa18.82■□□□□ 0.6
NPIPB4-221ENST00000545367 MYO15BQ96JP2 1530 aa18.73■□□□□ 0.59
NPIPB4-221ENST00000545367 CC2D2AQ9P2K1 1620 aa18.68■□□□□ 0.58
NPIPB4-221ENST00000545367 CECR2Q9BXF3 1484 aa18.62■□□□□ 0.57
NPIPB4-221ENST00000545367 SHROOM4Q9ULL8 1493 aa18.6■□□□□ 0.57
NPIPB4-221ENST00000545367 PLPPR3Q6T4P5 718 aa18.56■□□□□ 0.56
NPIPB4-221ENST00000545367 EIF4G1Q04637 1599 aaKnown RBP18.52■□□□□ 0.56
NPIPB4-221ENST00000545367 FOXD1Q16676 465 aa18.52■□□□□ 0.56
NPIPB4-221ENST00000545367 SCRIBQ14160 1630 aa18.51■□□□□ 0.55
NPIPB4-221ENST00000545367 ZCCHC6Q5VYS8 1495 aaKnown RBP18.42■□□□□ 0.54
NPIPB4-221ENST00000545367 DCAF1Q9Y4B6 1507 aa18.35■□□□□ 0.53
NPIPB4-221ENST00000545367 DNAJC5Q9H3Z4 198 aa18.26■□□□□ 0.51
NPIPB4-221ENST00000545367 CUX2O14529 1486 aa17.95■□□□□ 0.46
NPIPB4-221ENST00000545367 ERCC6Q03468 1493 aa17.87■□□□□ 0.45
NPIPB4-221ENST00000545367 PPP6R1Q9UPN7 881 aa17.68■□□□□ 0.42
NPIPB4-221ENST00000545367 THOC2Q8NI27 1593 aaKnown RBP17.65■□□□□ 0.42
NPIPB4-221ENST00000545367 ADRA2BP18089 450 aa17.64■□□□□ 0.41
NPIPB4-221ENST00000545367 NCAPD3P42695 1498 aa17.63■□□□□ 0.41
NPIPB4-221ENST00000545367 NESP48681 1621 aa17.61■□□□□ 0.41
NPIPB4-221ENST00000545367 HMGXB3Q12766 1538 aa17.61■□□□□ 0.41
NPIPB4-221ENST00000545367 ATAD2BQ9ULI0 1458 aa17.57■□□□□ 0.4
NPIPB4-221ENST00000545367 SMARCA4P51532 1647 aa17.57■□□□□ 0.4
NPIPB4-221ENST00000545367 SMARCA2P51531 1590 aa17.56■□□□□ 0.4
NPIPB4-221ENST00000545367 KIF21AQ7Z4S6 1674 aa17.53■□□□□ 0.4
NPIPB4-221ENST00000545367 PIAS4Q8N2W9 510 aaPredicted RBP17.44■□□□□ 0.38
NPIPB4-221ENST00000545367 LAMC3Q9Y6N6 1575 aa17.44■□□□□ 0.38
NPIPB4-221ENST00000545367 BAZ1BQ9UIG0 1483 aaKnown RBP17.44■□□□□ 0.38
NPIPB4-221ENST00000545367 TRIM41Q8WV44 630 aa17.39■□□□□ 0.37
NPIPB4-221ENST00000545367 BAZ1AQ9NRL2 1556 aaPredicted RBP17.35■□□□□ 0.37
NPIPB4-221ENST00000545367 PEG3Q9GZU2 1588 aa17.34■□□□□ 0.37
NPIPB4-221ENST00000545367 PDS5BQ9NTI5 1447 aa17.23■□□□□ 0.35
NPIPB4-221ENST00000545367 MSH5O43196 834 aa17.23■□□□□ 0.35
NPIPB4-221ENST00000545367 WDR62O43379 1518 aa17.22■□□□□ 0.35
NPIPB4-221ENST00000545367 MRC2Q9UBG0 1479 aa17.21■□□□□ 0.35
NPIPB4-221ENST00000545367 MROH2BQ7Z745 1585 aa17.18■□□□□ 0.34
NPIPB4-221ENST00000545367 CEP164Q9UPV0 1460 aa17.06■□□□□ 0.32
NPIPB4-221ENST00000545367 CADPSQ9ULU8 1353 aa17.05■□□□□ 0.32
NPIPB4-221ENST00000545367 WIZO95785 1651 aa17.04■□□□□ 0.32
NPIPB4-221ENST00000545367 RIMBP3CA6NJZ7 1639 aa16.99■□□□□ 0.31
NPIPB4-221ENST00000545367 RIMBP3BA6NNM3 1639 aa16.99■□□□□ 0.31
NPIPB4-221ENST00000545367 RIMBP3Q9UFD9 1639 aa16.99■□□□□ 0.31
NPIPB4-221ENST00000545367 FANCD2Q9BXW9 1451 aa16.97■□□□□ 0.31
NPIPB4-221ENST00000545367 PRDM2Q13029 1718 aa16.93■□□□□ 0.3
NPIPB4-221ENST00000545367 URB2Q14146 1524 aaKnown RBP16.89■□□□□ 0.29
NPIPB4-221ENST00000545367 OSCARQ8IYS5 282 aa16.86■□□□□ 0.29
NPIPB4-221ENST00000545367 ARHGEF11O15085 1522 aa16.84■□□□□ 0.29
NPIPB4-221ENST00000545367 CFTRP13569 1480 aa16.83■□□□□ 0.28
NPIPB4-221ENST00000545367 EIF4G3O43432 1585 aaKnown RBP16.77■□□□□ 0.27
NPIPB4-221ENST00000545367 CHD1O14646 1710 aa16.76■□□□□ 0.27
NPIPB4-221ENST00000545367 TOP2AP11388 1531 aaKnown RBP16.75■□□□□ 0.27
NPIPB4-221ENST00000545367 ZNF608Q9ULD9 1512 aaPredicted RBP16.75■□□□□ 0.27
NPIPB4-221ENST00000545367 IFT140Q96RY7 1462 aa16.68■□□□□ 0.26
NPIPB4-221ENST00000545367 ARAP1Q96P48 1450 aa16.64■□□□□ 0.25
NPIPB4-221ENST00000545367 TOPBP1Q92547 1522 aa16.62■□□□□ 0.25
NPIPB4-221ENST00000545367 RSF1Q96T23 1441 aaPredicted RBP16.58■□□□□ 0.24
NPIPB4-221ENST00000545367 DNMBPQ6XZF7 1577 aa16.57■□□□□ 0.24
NPIPB4-221ENST00000545367 TARBP1Q13395 1621 aaKnown RBP16.56■□□□□ 0.24
NPIPB4-221ENST00000545367 CYB5RLQ6IPT4 315 aa16.55■□□□□ 0.24
NPIPB4-221ENST00000545367 TRHP20396 242 aaPredicted RBP16.53■□□□□ 0.24
NPIPB4-221ENST00000545367 CCDC88BA6NC98 1476 aa16.47■□□□□ 0.23
NPIPB4-221ENST00000545367 AQRO60306 1485 aaKnown RBP eCLIP16.47■□□□□ 0.23
NPIPB4-221ENST00000545367 ABCC8Q09428 1581 aa16.47■□□□□ 0.23
NPIPB4-221ENST00000545367 CLASP1Q7Z460 1538 aa16.45■□□□□ 0.22
NPIPB4-221ENST00000545367 POLA1P09884 1462 aaPredicted RBP16.42■□□□□ 0.22
NPIPB4-221ENST00000545367 FBLN2P98095 1184 aa16.39■□□□□ 0.21
NPIPB4-221ENST00000545367 SYNJ1O43426 1573 aa16.38■□□□□ 0.21
NPIPB4-221ENST00000545367 SNAPC4Q5SXM2 1469 aa16.38■□□□□ 0.21
NPIPB4-221ENST00000545367 WDR97A6NE52 1622 aa16.35■□□□□ 0.21
NPIPB4-221ENST00000545367 RAD54L2Q9Y4B4 1467 aa16.34■□□□□ 0.21
NPIPB4-221ENST00000545367 PBRM1Q86U86 1689 aa16.34■□□□□ 0.21
NPIPB4-221ENST00000545367 SCAF1Q9H7N4 1312 aaKnown RBP16.3■□□□□ 0.2
NPIPB4-221ENST00000545367 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
NPIPB4-221ENST00000545367 MAGI1Q96QZ7 1491 aaPredicted RBP16.28■□□□□ 0.2
NPIPB4-221ENST00000545367 FGD5Q6ZNL6 1462 aa16.27■□□□□ 0.19
NPIPB4-221ENST00000545367 TDRD9Q8NDG6 1382 aaKnown RBP16.26■□□□□ 0.19
NPIPB4-221ENST00000545367 SOGA1O94964 1423 aa16.23■□□□□ 0.19
NPIPB4-221ENST00000545367 SYNJ2O15056 1496 aa16.22■□□□□ 0.19
NPIPB4-221ENST00000545367 GAPVD1Q14C86 1478 aa16.22■□□□□ 0.19
NPIPB4-221ENST00000545367 GRIN2BQ13224 1484 aa16.21■□□□□ 0.19
NPIPB4-221ENST00000545367 CUX1P39880 1505 aa16.2■□□□□ 0.18
NPIPB4-221ENST00000545367 KIF13AQ9H1H9 1805 aa16.17■□□□□ 0.18
NPIPB4-221ENST00000545367 ERCC6L2Q5T890 1561 aa16.17■□□□□ 0.18
NPIPB4-221ENST00000545367 ABCA5Q8WWZ7 1642 aa16.16■□□□□ 0.18
NPIPB4-221ENST00000545367 CHMP7Q8WUX9 453 aaPredicted RBP16.15■□□□□ 0.18
NPIPB4-221ENST00000545367 ADAMTS12P58397 1594 aa16.09■□□□□ 0.17
NPIPB4-221ENST00000545367 CEP170Q5SW79 1584 aa16.08■□□□□ 0.16
NPIPB4-221ENST00000545367 SHROOM2Q13796 1616 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms