RNA–Protein interactions for RNA: ENST00000543199.5

GPN3-203, Transcript of GPN-loop GTPase 3, humanhuman

TSL 5 BASIC

Gene GPN3, Length 1,604 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-203ENST00000543199 NISCHQ9Y2I1 1504 aa32.12■■■□□ 2.73
GPN3-203ENST00000543199 ABCC9O60706 1549 aa28.94■■■□□ 2.22
GPN3-203ENST00000543199 CCDC180Q9P1Z9 1646 aa28.81■■■□□ 2.2
GPN3-203ENST00000543199 RB1CC1Q8TDY2 1594 aa27.48■■□□□ 1.99
GPN3-203ENST00000543199 AEBP2Q6ZN18 517 aaPredicted RBP27.38■■□□□ 1.97
GPN3-203ENST00000543199 NACADO15069 1562 aa27.26■■□□□ 1.95
GPN3-203ENST00000543199 DCAF8L2P0C7V8 631 aa27.21■■□□□ 1.95
GPN3-203ENST00000543199 DNAJC5BQ9UF47 199 aa27.18■■□□□ 1.94
GPN3-203ENST00000543199 PABPN1Q86U42 306 aaKnown RBP eCLIP26.95■■□□□ 1.91
GPN3-203ENST00000543199 UNC13AQ9UPW8 1703 aa26.85■■□□□ 1.89
GPN3-203ENST00000543199 MYO15BQ96JP2 1530 aa26.84■■□□□ 1.89
GPN3-203ENST00000543199 BICRAQ9NZM4 1560 aa26.68■■□□□ 1.86
GPN3-203ENST00000543199 ZCCHC6Q5VYS8 1495 aaKnown RBP26.62■■□□□ 1.85
GPN3-203ENST00000543199 DCAF1Q9Y4B6 1507 aa26.49■■□□□ 1.83
GPN3-203ENST00000543199 SCRIBQ14160 1630 aa26.33■■□□□ 1.81
GPN3-203ENST00000543199 SHROOM4Q9ULL8 1493 aa26.28■■□□□ 1.8
GPN3-203ENST00000543199 CC2D2AQ9P2K1 1620 aa26.11■■□□□ 1.77
GPN3-203ENST00000543199 CECR2Q9BXF3 1484 aa26.06■■□□□ 1.76
GPN3-203ENST00000543199 EIF4G1Q04637 1599 aaKnown RBP26.05■■□□□ 1.76
GPN3-203ENST00000543199 CHIC1Q5VXU3 224 aa25.62■■□□□ 1.69
GPN3-203ENST00000543199 NCAPD3P42695 1498 aa25.18■■□□□ 1.62
GPN3-203ENST00000543199 ATAD2BQ9ULI0 1458 aa25.11■■□□□ 1.61
GPN3-203ENST00000543199 SMARCA4P51532 1647 aa25.07■■□□□ 1.6
GPN3-203ENST00000543199 SMARCA2P51531 1590 aa25.03■■□□□ 1.6
GPN3-203ENST00000543199 ERCC6Q03468 1493 aa24.99■■□□□ 1.59
GPN3-203ENST00000543199 HMGXB3Q12766 1538 aa24.99■■□□□ 1.59
GPN3-203ENST00000543199 DNAJC5Q9H3Z4 198 aa24.97■■□□□ 1.59
GPN3-203ENST00000543199 BAZ1AQ9NRL2 1556 aaPredicted RBP24.94■■□□□ 1.58
GPN3-203ENST00000543199 CUX2O14529 1486 aa24.92■■□□□ 1.58
GPN3-203ENST00000543199 BAZ1BQ9UIG0 1483 aaKnown RBP24.88■■□□□ 1.57
GPN3-203ENST00000543199 NESP48681 1621 aa24.85■■□□□ 1.57
GPN3-203ENST00000543199 PEG3Q9GZU2 1588 aa24.8■■□□□ 1.56
GPN3-203ENST00000543199 MROH2BQ7Z745 1585 aa24.77■■□□□ 1.56
GPN3-203ENST00000543199 LAMC3Q9Y6N6 1575 aa24.62■■□□□ 1.53
GPN3-203ENST00000543199 THOC2Q8NI27 1593 aaKnown RBP24.58■■□□□ 1.53
GPN3-203ENST00000543199 KIF21AQ7Z4S6 1674 aa24.5■■□□□ 1.51
GPN3-203ENST00000543199 PDS5BQ9NTI5 1447 aa24.49■■□□□ 1.51
GPN3-203ENST00000543199 WIZO95785 1651 aa24.48■■□□□ 1.51
GPN3-203ENST00000543199 CADPSQ9ULU8 1353 aa24.42■■□□□ 1.5
GPN3-203ENST00000543199 MRC2Q9UBG0 1479 aa24.29■■□□□ 1.48
GPN3-203ENST00000543199 RSF1Q96T23 1441 aaPredicted RBP24.23■■□□□ 1.47
GPN3-203ENST00000543199 WDR62O43379 1518 aa24.23■■□□□ 1.47
GPN3-203ENST00000543199 CEP164Q9UPV0 1460 aa24.2■■□□□ 1.46
GPN3-203ENST00000543199 FANCD2Q9BXW9 1451 aa24.17■■□□□ 1.46
GPN3-203ENST00000543199 TOP2AP11388 1531 aaKnown RBP24.15■■□□□ 1.46
GPN3-203ENST00000543199 CFTRP13569 1480 aa24.14■■□□□ 1.45
GPN3-203ENST00000543199 URB2Q14146 1524 aaKnown RBP23.97■■□□□ 1.43
GPN3-203ENST00000543199 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
GPN3-203ENST00000543199 CCDC88BA6NC98 1476 aa23.88■■□□□ 1.41
GPN3-203ENST00000543199 PRDM2Q13029 1718 aa23.86■■□□□ 1.41
GPN3-203ENST00000543199 OSCARQ8IYS5 282 aa23.79■■□□□ 1.4
GPN3-203ENST00000543199 IFT140Q96RY7 1462 aa23.7■■□□□ 1.38
GPN3-203ENST00000543199 TOPBP1Q92547 1522 aa23.69■■□□□ 1.38
GPN3-203ENST00000543199 ZNF608Q9ULD9 1512 aaPredicted RBP23.69■■□□□ 1.38
GPN3-203ENST00000543199 ABCC8Q09428 1581 aa23.6■■□□□ 1.37
GPN3-203ENST00000543199 DNMBPQ6XZF7 1577 aa23.6■■□□□ 1.37
GPN3-203ENST00000543199 EIF4G3O43432 1585 aaKnown RBP23.55■■□□□ 1.36
GPN3-203ENST00000543199 RIMBP3CA6NJZ7 1639 aa23.49■■□□□ 1.35
GPN3-203ENST00000543199 RIMBP3BA6NNM3 1639 aa23.49■■□□□ 1.35
GPN3-203ENST00000543199 RIMBP3Q9UFD9 1639 aa23.49■■□□□ 1.35
GPN3-203ENST00000543199 TARBP1Q13395 1621 aaKnown RBP23.47■■□□□ 1.35
GPN3-203ENST00000543199 AQRO60306 1485 aaKnown RBP eCLIP23.47■■□□□ 1.35
GPN3-203ENST00000543199 SENP3Q9H4L4 574 aaPredicted RBP23.47■■□□□ 1.35
GPN3-203ENST00000543199 POLA1P09884 1462 aaPredicted RBP23.46■■□□□ 1.35
GPN3-203ENST00000543199 ARHGEF11O15085 1522 aa23.42■■□□□ 1.34
GPN3-203ENST00000543199 RAD54L2Q9Y4B4 1467 aa23.39■■□□□ 1.34
GPN3-203ENST00000543199 CHD1O14646 1710 aa23.38■■□□□ 1.33
GPN3-203ENST00000543199 FBLN2P98095 1184 aa23.36■■□□□ 1.33
GPN3-203ENST00000543199 SOGA1O94964 1423 aa23.34■■□□□ 1.33
GPN3-203ENST00000543199 TDRD9Q8NDG6 1382 aaKnown RBP23.33■■□□□ 1.32
GPN3-203ENST00000543199 FGD5Q6ZNL6 1462 aa23.31■■□□□ 1.32
GPN3-203ENST00000543199 CUX1P39880 1505 aa23.27■■□□□ 1.32
GPN3-203ENST00000543199 CYB5RLQ6IPT4 315 aa23.27■■□□□ 1.32
GPN3-203ENST00000543199 SNAPC4Q5SXM2 1469 aa23.24■■□□□ 1.31
GPN3-203ENST00000543199 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
GPN3-203ENST00000543199 ARAP1Q96P48 1450 aa23.2■■□□□ 1.3
GPN3-203ENST00000543199 SUPT5HO00267 1087 aaKnown RBP23.19■■□□□ 1.3
GPN3-203ENST00000543199 CHMP7Q8WUX9 453 aaPredicted RBP23.15■■□□□ 1.3
GPN3-203ENST00000543199 GRIN2BQ13224 1484 aa23.14■■□□□ 1.3
GPN3-203ENST00000543199 MAGI1Q96QZ7 1491 aaPredicted RBP23.14■■□□□ 1.3
GPN3-203ENST00000543199 CLASP1Q7Z460 1538 aa23.1■■□□□ 1.29
GPN3-203ENST00000543199 SYNJ1O43426 1573 aa23.09■■□□□ 1.29
GPN3-203ENST00000543199 PHF23Q9BUL5 403 aaPredicted RBP23.08■■□□□ 1.28
GPN3-203ENST00000543199 SYNJ2O15056 1496 aa23.07■■□□□ 1.28
GPN3-203ENST00000543199 GAPVD1Q14C86 1478 aa23.06■■□□□ 1.28
GPN3-203ENST00000543199 PBRM1Q86U86 1689 aa23.05■■□□□ 1.28
GPN3-203ENST00000543199 TRHP20396 242 aaPredicted RBP23.04■■□□□ 1.28
GPN3-203ENST00000543199 ABCA10Q8WWZ4 1543 aa23.02■■□□□ 1.28
GPN3-203ENST00000543199 ABCA5Q8WWZ7 1642 aa22.99■■□□□ 1.27
GPN3-203ENST00000543199 WRNQ14191 1432 aaPredicted RBP eCLIP22.93■■□□□ 1.26
GPN3-203ENST00000543199 TOP2BQ02880 1626 aa22.87■■□□□ 1.25
GPN3-203ENST00000543199 BIVM-ERCC5R4GMW8 1640 aa22.86■■□□□ 1.25
GPN3-203ENST00000543199 GRIN2AQ12879 1464 aa22.86■■□□□ 1.25
GPN3-203ENST00000543199 ADAMTS12P58397 1594 aa22.83■■□□□ 1.25
GPN3-203ENST00000543199 CEP170Q5SW79 1584 aa22.78■■□□□ 1.24
GPN3-203ENST00000543199 ERCC6L2Q5T890 1561 aa22.77■■□□□ 1.24
GPN3-203ENST00000543199 NUP160Q12769 1436 aa22.77■■□□□ 1.24
GPN3-203ENST00000543199 FHAD1B1AJZ9 1412 aa22.76■■□□□ 1.23
GPN3-203ENST00000543199 ERICH3Q5RHP9 1530 aa22.72■■□□□ 1.23
GPN3-203ENST00000543199 SHROOM2Q13796 1616 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms