RNA–Protein interactions for RNA: ENST00000540430.5

LDHA-218, Transcript of lactate dehydrogenase A, humanhuman

TSL 2 BASIC

Gene LDHA, Length 2,305 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-218ENST00000540430 NISCHQ9Y2I1 1504 aa20.74■□□□□ 0.91
LDHA-218ENST00000540430 CCDC180Q9P1Z9 1646 aa18.61■□□□□ 0.57
LDHA-218ENST00000540430 ABCC9O60706 1549 aa18.55■□□□□ 0.56
LDHA-218ENST00000540430 RB1CC1Q8TDY2 1594 aa17.7■□□□□ 0.42
LDHA-218ENST00000540430 NACADO15069 1562 aa17.59■□□□□ 0.41
LDHA-218ENST00000540430 DCAF8L2P0C7V8 631 aa17.46■□□□□ 0.38
LDHA-218ENST00000540430 MYO15BQ96JP2 1530 aa17.38■□□□□ 0.37
LDHA-218ENST00000540430 DNAJC5BQ9UF47 199 aa17.37■□□□□ 0.37
LDHA-218ENST00000540430 UNC13AQ9UPW8 1703 aa17.28■□□□□ 0.36
LDHA-218ENST00000540430 PABPN1Q86U42 306 aaKnown RBP eCLIP17.26■□□□□ 0.353e-14■□□□□ 10.1
LDHA-218ENST00000540430 ZCCHC6Q5VYS8 1495 aaKnown RBP17.19■□□□□ 0.34
LDHA-218ENST00000540430 BICRAQ9NZM4 1560 aa17.17■□□□□ 0.34
LDHA-218ENST00000540430 DCAF1Q9Y4B6 1507 aa17.16■□□□□ 0.34
LDHA-218ENST00000540430 SHROOM4Q9ULL8 1493 aa16.99■□□□□ 0.31
LDHA-218ENST00000540430 SCRIBQ14160 1630 aa16.93■□□□□ 0.3
LDHA-218ENST00000540430 CC2D2AQ9P2K1 1620 aa16.77■□□□□ 0.28
LDHA-218ENST00000540430 EIF4G1Q04637 1599 aaKnown RBP16.75■□□□□ 0.27
LDHA-218ENST00000540430 CECR2Q9BXF3 1484 aa16.73■□□□□ 0.27
LDHA-218ENST00000540430 NCAPD3P42695 1498 aa16.24■□□□□ 0.19
LDHA-218ENST00000540430 ATAD2BQ9ULI0 1458 aa16.18■□□□□ 0.18
LDHA-218ENST00000540430 SMARCA4P51532 1647 aa16.17■□□□□ 0.18
LDHA-218ENST00000540430 SMARCA2P51531 1590 aa16.15■□□□□ 0.18
LDHA-218ENST00000540430 HMGXB3Q12766 1538 aa16.13■□□□□ 0.17
LDHA-218ENST00000540430 BAZ1AQ9NRL2 1556 aaPredicted RBP16.1■□□□□ 0.17
LDHA-218ENST00000540430 ERCC6Q03468 1493 aa16.03■□□□□ 0.16
LDHA-218ENST00000540430 PEG3Q9GZU2 1588 aa16.03■□□□□ 0.16
LDHA-218ENST00000540430 BAZ1BQ9UIG0 1483 aaKnown RBP16.03■□□□□ 0.16
LDHA-218ENST00000540430 CUX2O14529 1486 aa16.02■□□□□ 0.15
LDHA-218ENST00000540430 MROH2BQ7Z745 1585 aa15.96■□□□□ 0.15
LDHA-218ENST00000540430 DNAJC5Q9H3Z4 198 aa15.96■□□□□ 0.15
LDHA-218ENST00000540430 NESP48681 1621 aa15.94■□□□□ 0.14
LDHA-218ENST00000540430 LAMC3Q9Y6N6 1575 aa15.87■□□□□ 0.13
LDHA-218ENST00000540430 THOC2Q8NI27 1593 aaKnown RBP15.8■□□□□ 0.12
LDHA-218ENST00000540430 PDS5BQ9NTI5 1447 aa15.77■□□□□ 0.12
LDHA-218ENST00000540430 WIZO95785 1651 aa15.77■□□□□ 0.11
LDHA-218ENST00000540430 KIF21AQ7Z4S6 1674 aa15.75■□□□□ 0.11
LDHA-218ENST00000540430 CADPSQ9ULU8 1353 aa15.74■□□□□ 0.11
LDHA-218ENST00000540430 HRCP23327 699 aa15.68■□□□□ 0.1
LDHA-218ENST00000540430 RSF1Q96T23 1441 aaPredicted RBP15.65■□□□□ 0.1
LDHA-218ENST00000540430 MRC2Q9UBG0 1479 aa15.63■□□□□ 0.09
LDHA-218ENST00000540430 PELP1Q8IZL8 1130 aaKnown RBP15.62■□□□□ 0.09
LDHA-218ENST00000540430 WDR62O43379 1518 aa15.59■□□□□ 0.09
LDHA-218ENST00000540430 TOP2AP11388 1531 aaKnown RBP15.59■□□□□ 0.09
LDHA-218ENST00000540430 CFTRP13569 1480 aa15.57■□□□□ 0.08
LDHA-218ENST00000540430 CEP164Q9UPV0 1460 aa15.57■□□□□ 0.08
LDHA-218ENST00000540430 FANCD2Q9BXW9 1451 aa15.55■□□□□ 0.08
LDHA-218ENST00000540430 URB2Q14146 1524 aaKnown RBP15.42■□□□□ 0.06
LDHA-218ENST00000540430 PRDM2Q13029 1718 aa15.41■□□□□ 0.06
LDHA-218ENST00000540430 CCDC88BA6NC98 1476 aa15.4■□□□□ 0.06
LDHA-218ENST00000540430 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
LDHA-218ENST00000540430 IFT140Q96RY7 1462 aa15.27■□□□□ 0.03
LDHA-218ENST00000540430 TOPBP1Q92547 1522 aa15.26■□□□□ 0.03
LDHA-218ENST00000540430 ABCC8Q09428 1581 aa15.25■□□□□ 0.03
LDHA-218ENST00000540430 TRIM41Q8WV44 630 aa15.24■□□□□ 0.03
LDHA-218ENST00000540430 ZNF608Q9ULD9 1512 aaPredicted RBP15.22■□□□□ 0.03
LDHA-218ENST00000540430 DNMBPQ6XZF7 1577 aa15.21■□□□□ 0.03
LDHA-218ENST00000540430 MYT1Q01538 1121 aa15.2■□□□□ 0.02
LDHA-218ENST00000540430 PCGF6Q9BYE7 350 aa15.17■□□□□ 0.02
LDHA-218ENST00000540430 EIF4G3O43432 1585 aaKnown RBP15.14■□□□□ 0.01
LDHA-218ENST00000540430 TARBP1Q13395 1621 aaKnown RBP15.12■□□□□ 0.01
LDHA-218ENST00000540430 SUPT5HO00267 1087 aaKnown RBP15.12■□□□□ 0.01
LDHA-218ENST00000540430 PPARGC1BQ86YN6 1023 aaKnown RBP15.11■□□□□ 0.01
LDHA-218ENST00000540430 POLA1P09884 1462 aaPredicted RBP15.11■□□□□ 0.01
LDHA-218ENST00000540430 AQRO60306 1485 aaKnown RBP eCLIP15.08■□□□□ 0.012e-8■■■■□ 26.4
LDHA-218ENST00000540430 CHIC1Q5VXU3 224 aa15.08■□□□□ 0
LDHA-218ENST00000540430 RIMBP3CA6NJZ7 1639 aa15.06■□□□□ 0
LDHA-218ENST00000540430 RIMBP3BA6NNM3 1639 aa15.06■□□□□ 0
LDHA-218ENST00000540430 RIMBP3Q9UFD9 1639 aa15.06■□□□□ 0
LDHA-218ENST00000540430 RAD54L2Q9Y4B4 1467 aa15.04■□□□□ -0
LDHA-218ENST00000540430 SOGA1O94964 1423 aa15.03■□□□□ -0
LDHA-218ENST00000540430 ARHGEF11O15085 1522 aa15.02■□□□□ -0
LDHA-218ENST00000540430 CHD1O14646 1710 aa15.02■□□□□ -0
LDHA-218ENST00000540430 FGD5Q6ZNL6 1462 aa15.01□□□□□ -0.01
LDHA-218ENST00000540430 WDR97A6NE52 1622 aa15□□□□□ -0.01
LDHA-218ENST00000540430 CUX1P39880 1505 aa15□□□□□ -0.01
LDHA-218ENST00000540430 TDRD9Q8NDG6 1382 aaKnown RBP15□□□□□ -0.01
LDHA-218ENST00000540430 FBLN2P98095 1184 aa14.98□□□□□ -0.01
LDHA-218ENST00000540430 SNAPC4Q5SXM2 1469 aa14.94□□□□□ -0.02
LDHA-218ENST00000540430 MAGI1Q96QZ7 1491 aaPredicted RBP14.92□□□□□ -0.02
LDHA-218ENST00000540430 GRIN2BQ13224 1484 aa14.91□□□□□ -0.02
LDHA-218ENST00000540430 CYB5RLQ6IPT4 315 aa14.9□□□□□ -0.02
LDHA-218ENST00000540430 CHMP7Q8WUX9 453 aaPredicted RBP14.88□□□□□ -0.03
LDHA-218ENST00000540430 ARAP1Q96P48 1450 aa14.88□□□□□ -0.03
LDHA-218ENST00000540430 SYNJ2O15056 1496 aa14.87□□□□□ -0.03
LDHA-218ENST00000540430 SYNJ1O43426 1573 aa14.86□□□□□ -0.03
LDHA-218ENST00000540430 GAPVD1Q14C86 1478 aa14.86□□□□□ -0.03
LDHA-218ENST00000540430 CLASP1Q7Z460 1538 aa14.86□□□□□ -0.03
LDHA-218ENST00000540430 ABCA10Q8WWZ4 1543 aa14.86□□□□□ -0.03
LDHA-218ENST00000540430 ZEB1P37275 1124 aaPredicted RBP14.86□□□□□ -0.03
LDHA-218ENST00000540430 PBRM1Q86U86 1689 aa14.84□□□□□ -0.03
LDHA-218ENST00000540430 TRIM26Q12899 539 aaPredicted RBP14.84□□□□□ -0.03
LDHA-218ENST00000540430 ABCA5Q8WWZ7 1642 aa14.83□□□□□ -0.04
LDHA-218ENST00000540430 WRNQ14191 1432 aaPredicted RBP eCLIP14.8□□□□□ -0.04
LDHA-218ENST00000540430 TOP2BQ02880 1626 aa14.78□□□□□ -0.04
LDHA-218ENST00000540430 BIVM-ERCC5R4GMW8 1640 aa14.78□□□□□ -0.04
LDHA-218ENST00000540430 SCAF1Q9H7N4 1312 aaKnown RBP14.78□□□□□ -0.04
LDHA-218ENST00000540430 TRHP20396 242 aaPredicted RBP14.72□□□□□ -0.05
LDHA-218ENST00000540430 GRIN2AQ12879 1464 aa14.72□□□□□ -0.05
LDHA-218ENST00000540430 ADAMTS12P58397 1594 aa14.71□□□□□ -0.05
LDHA-218ENST00000540430 FHAD1B1AJZ9 1412 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms