RNA–Protein interactions for RNA: ENST00000535290.5

CLIP1-206, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-206ENST00000535290 NISCHQ9Y2I1 1504 aa21.53■■□□□ 1.04
CLIP1-206ENST00000535290 ABCC9O60706 1549 aa20.2■□□□□ 0.82
CLIP1-206ENST00000535290 DNAJC5BQ9UF47 199 aa19.59■□□□□ 0.73
CLIP1-206ENST00000535290 CCDC180Q9P1Z9 1646 aa19.44■□□□□ 0.7
CLIP1-206ENST00000535290 AEBP2Q6ZN18 517 aaPredicted RBP19.12■□□□□ 0.65
CLIP1-206ENST00000535290 RB1CC1Q8TDY2 1594 aa18.86■□□□□ 0.61
CLIP1-206ENST00000535290 PABPN1Q86U42 306 aaKnown RBP eCLIP18.79■□□□□ 0.6
CLIP1-206ENST00000535290 NACADO15069 1562 aa18.6■□□□□ 0.57
CLIP1-206ENST00000535290 DCAF8L2P0C7V8 631 aa18.55■□□□□ 0.56
CLIP1-206ENST00000535290 BICRAQ9NZM4 1560 aa18.38■□□□□ 0.53
CLIP1-206ENST00000535290 DNAJC5Q9H3Z4 198 aa18.37■□□□□ 0.53
CLIP1-206ENST00000535290 UNC13AQ9UPW8 1703 aa18.36■□□□□ 0.53
CLIP1-206ENST00000535290 CECR2Q9BXF3 1484 aa18.25■□□□□ 0.51
CLIP1-206ENST00000535290 CC2D2AQ9P2K1 1620 aa18.15■□□□□ 0.5
CLIP1-206ENST00000535290 MYO15BQ96JP2 1530 aa18.14■□□□□ 0.49
CLIP1-206ENST00000535290 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
CLIP1-206ENST00000535290 EIF4G1Q04637 1599 aaKnown RBP17.97■□□□□ 0.47
CLIP1-206ENST00000535290 CHIC1Q5VXU3 224 aa17.96■□□□□ 0.47
CLIP1-206ENST00000535290 SCRIBQ14160 1630 aa17.78■□□□□ 0.44
CLIP1-206ENST00000535290 ZCCHC6Q5VYS8 1495 aaKnown RBP17.7■□□□□ 0.42
CLIP1-206ENST00000535290 DCAF1Q9Y4B6 1507 aa17.7■□□□□ 0.42
CLIP1-206ENST00000535290 CUX2O14529 1486 aa17.59■□□□□ 0.41
CLIP1-206ENST00000535290 ERCC6Q03468 1493 aa17.44■□□□□ 0.38
CLIP1-206ENST00000535290 TRIM41Q8WV44 630 aa17.32■□□□□ 0.36
CLIP1-206ENST00000535290 NCAPD3P42695 1498 aa17.24■□□□□ 0.35
CLIP1-206ENST00000535290 NESP48681 1621 aa17.19■□□□□ 0.34
CLIP1-206ENST00000535290 ATAD2BQ9ULI0 1458 aa17.12■□□□□ 0.33
CLIP1-206ENST00000535290 THOC2Q8NI27 1593 aaKnown RBP17.04■□□□□ 0.32
CLIP1-206ENST00000535290 HMGXB3Q12766 1538 aa16.99■□□□□ 0.31
CLIP1-206ENST00000535290 SMARCA2P51531 1590 aa16.97■□□□□ 0.31
CLIP1-206ENST00000535290 BAZ1BQ9UIG0 1483 aaKnown RBP16.88■□□□□ 0.29
CLIP1-206ENST00000535290 SMARCA4P51532 1647 aa16.88■□□□□ 0.29
CLIP1-206ENST00000535290 LAMC3Q9Y6N6 1575 aa16.86■□□□□ 0.29
CLIP1-206ENST00000535290 PDS5BQ9NTI5 1447 aa16.86■□□□□ 0.29
CLIP1-206ENST00000535290 KIF21AQ7Z4S6 1674 aa16.82■□□□□ 0.28
CLIP1-206ENST00000535290 OSCARQ8IYS5 282 aa16.78■□□□□ 0.28
CLIP1-206ENST00000535290 MRC2Q9UBG0 1479 aa16.74■□□□□ 0.27
CLIP1-206ENST00000535290 CADPSQ9ULU8 1353 aa16.72■□□□□ 0.27
CLIP1-206ENST00000535290 PEG3Q9GZU2 1588 aa16.71■□□□□ 0.27
CLIP1-206ENST00000535290 BAZ1AQ9NRL2 1556 aaPredicted RBP16.71■□□□□ 0.27
CLIP1-206ENST00000535290 WDR62O43379 1518 aa16.7■□□□□ 0.26
CLIP1-206ENST00000535290 MROH2BQ7Z745 1585 aa16.61■□□□□ 0.25
CLIP1-206ENST00000535290 CEP164Q9UPV0 1460 aa16.54■□□□□ 0.24
CLIP1-206ENST00000535290 RIMBP3CA6NJZ7 1639 aa16.52■□□□□ 0.24
CLIP1-206ENST00000535290 RIMBP3BA6NNM3 1639 aa16.52■□□□□ 0.24
CLIP1-206ENST00000535290 RIMBP3Q9UFD9 1639 aa16.52■□□□□ 0.24
CLIP1-206ENST00000535290 FANCD2Q9BXW9 1451 aa16.5■□□□□ 0.23
CLIP1-206ENST00000535290 CYB5RLQ6IPT4 315 aa16.46■□□□□ 0.23
CLIP1-206ENST00000535290 ARHGEF11O15085 1522 aa16.45■□□□□ 0.22
CLIP1-206ENST00000535290 TRHP20396 242 aaPredicted RBP16.44■□□□□ 0.22
CLIP1-206ENST00000535290 URB2Q14146 1524 aaKnown RBP16.41■□□□□ 0.22
CLIP1-206ENST00000535290 CFTRP13569 1480 aa16.38■□□□□ 0.21
CLIP1-206ENST00000535290 ZNF608Q9ULD9 1512 aaPredicted RBP16.33■□□□□ 0.2
CLIP1-206ENST00000535290 WIZO95785 1651 aa16.33■□□□□ 0.2
CLIP1-206ENST00000535290 ARAP1Q96P48 1450 aa16.27■□□□□ 0.19
CLIP1-206ENST00000535290 IFT140Q96RY7 1462 aa16.24■□□□□ 0.19
CLIP1-206ENST00000535290 SENP3Q9H4L4 574 aaPredicted RBP16.21■□□□□ 0.19
CLIP1-206ENST00000535290 FBLN2P98095 1184 aa16.15■□□□□ 0.18
CLIP1-206ENST00000535290 RSF1Q96T23 1441 aaPredicted RBP16.14■□□□□ 0.17
CLIP1-206ENST00000535290 AQRO60306 1485 aaKnown RBP eCLIP16.12■□□□□ 0.17
CLIP1-206ENST00000535290 TOPBP1Q92547 1522 aa16.11■□□□□ 0.17
CLIP1-206ENST00000535290 EIF4G3O43432 1585 aaKnown RBP16.11■□□□□ 0.17
CLIP1-206ENST00000535290 TOP2AP11388 1531 aaKnown RBP16.08■□□□□ 0.16
CLIP1-206ENST00000535290 CHD1O14646 1710 aa16.07■□□□□ 0.16
CLIP1-206ENST00000535290 PHF23Q9BUL5 403 aaPredicted RBP16.04■□□□□ 0.16
CLIP1-206ENST00000535290 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
CLIP1-206ENST00000535290 TARBP1Q13395 1621 aaKnown RBP15.97■□□□□ 0.15
CLIP1-206ENST00000535290 CCDC88BA6NC98 1476 aa15.97■□□□□ 0.15
CLIP1-206ENST00000535290 PRDM2Q13029 1718 aa15.96■□□□□ 0.15
CLIP1-206ENST00000535290 DNMBPQ6XZF7 1577 aa15.96■□□□□ 0.14
CLIP1-206ENST00000535290 TDRD9Q8NDG6 1382 aaKnown RBP15.95■□□□□ 0.14
CLIP1-206ENST00000535290 CLASP1Q7Z460 1538 aa15.94■□□□□ 0.14
CLIP1-206ENST00000535290 POLA1P09884 1462 aaPredicted RBP15.92■□□□□ 0.14
CLIP1-206ENST00000535290 CHMP7Q8WUX9 453 aaPredicted RBP15.92■□□□□ 0.14
CLIP1-206ENST00000535290 RAD54L2Q9Y4B4 1467 aa15.91■□□□□ 0.14
CLIP1-206ENST00000535290 SNAPC4Q5SXM2 1469 aa15.89■□□□□ 0.13
CLIP1-206ENST00000535290 SOGA1O94964 1423 aa15.85■□□□□ 0.13
CLIP1-206ENST00000535290 GAPVD1Q14C86 1478 aa15.85■□□□□ 0.13
CLIP1-206ENST00000535290 SYNJ1O43426 1573 aa15.83■□□□□ 0.13
CLIP1-206ENST00000535290 ILDR1Q86SU0 546 aaPredicted RBP15.8■□□□□ 0.12
CLIP1-206ENST00000535290 MAGI1Q96QZ7 1491 aaPredicted RBP15.79■□□□□ 0.12
CLIP1-206ENST00000535290 SYNJ2O15056 1496 aa15.77■□□□□ 0.11
CLIP1-206ENST00000535290 GRIN2BQ13224 1484 aa15.76■□□□□ 0.11
CLIP1-206ENST00000535290 FGD5Q6ZNL6 1462 aa15.73■□□□□ 0.11
CLIP1-206ENST00000535290 ERCC6L2Q5T890 1561 aa15.7■□□□□ 0.1
CLIP1-206ENST00000535290 WDR97A6NE52 1622 aa15.69■□□□□ 0.1
CLIP1-206ENST00000535290 KDM4FA0A1W2PPD8 638 aa15.66■□□□□ 0.1
CLIP1-206ENST00000535290 CUX1P39880 1505 aa15.63■□□□□ 0.09
CLIP1-206ENST00000535290 CEP170Q5SW79 1584 aa15.58■□□□□ 0.08
CLIP1-206ENST00000535290 FAM69CQ0P6D2 419 aa15.57■□□□□ 0.08
CLIP1-206ENST00000535290 KIF13AQ9H1H9 1805 aa15.56■□□□□ 0.08
CLIP1-206ENST00000535290 GRIN2AQ12879 1464 aa15.55■□□□□ 0.08
CLIP1-206ENST00000535290 NUP160Q12769 1436 aa15.54■□□□□ 0.08
CLIP1-206ENST00000535290 PBRM1Q86U86 1689 aa15.54■□□□□ 0.08
CLIP1-206ENST00000535290 ABCA10Q8WWZ4 1543 aa15.51■□□□□ 0.07
CLIP1-206ENST00000535290 ABCC10Q5T3U5 1492 aa15.5■□□□□ 0.07
CLIP1-206ENST00000535290 ABCA5Q8WWZ7 1642 aa15.49■□□□□ 0.07
CLIP1-206ENST00000535290 SHROOM2Q13796 1616 aa15.46■□□□□ 0.07
CLIP1-206ENST00000535290 PRG4Q92954 1404 aaPredicted RBP15.46■□□□□ 0.07
CLIP1-206ENST00000535290 NPM1P06748 294 aaKnown RBP eCLIP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms