RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, humanhuman

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-238ENST00000534647 NISCHQ9Y2I1 1504 aa29.09■■■□□ 2.25
CTNND1-238ENST00000534647 ABCC9O60706 1549 aa26.17■■□□□ 1.78
CTNND1-238ENST00000534647 CCDC180Q9P1Z9 1646 aa26.1■■□□□ 1.77
CTNND1-238ENST00000534647 RB1CC1Q8TDY2 1594 aa24.92■■□□□ 1.58
CTNND1-238ENST00000534647 CHIC1Q5VXU3 224 aa24.81■■□□□ 1.56
CTNND1-238ENST00000534647 NACADO15069 1562 aa24.76■■□□□ 1.55
CTNND1-238ENST00000534647 DNAJC5BQ9UF47 199 aa24.72■■□□□ 1.55
CTNND1-238ENST00000534647 DCAF8L2P0C7V8 631 aa24.52■■□□□ 1.52
CTNND1-238ENST00000534647 MYO15BQ96JP2 1530 aa24.46■■□□□ 1.51
CTNND1-238ENST00000534647 PABPN1Q86U42 306 aaKnown RBP eCLIP24.37■■□□□ 1.49
CTNND1-238ENST00000534647 UNC13AQ9UPW8 1703 aa24.24■■□□□ 1.47
CTNND1-238ENST00000534647 BICRAQ9NZM4 1560 aa24.19■■□□□ 1.46
CTNND1-238ENST00000534647 DCAF1Q9Y4B6 1507 aa24.08■■□□□ 1.45
CTNND1-238ENST00000534647 ZCCHC6Q5VYS8 1495 aaKnown RBP24.07■■□□□ 1.44
CTNND1-238ENST00000534647 SHROOM4Q9ULL8 1493 aa23.95■■□□□ 1.42
CTNND1-238ENST00000534647 AEBP2Q6ZN18 517 aaPredicted RBP23.9■■□□□ 1.42
CTNND1-238ENST00000534647 SCRIBQ14160 1630 aa23.7■■□□□ 1.38
CTNND1-238ENST00000534647 CC2D2AQ9P2K1 1620 aa23.65■■□□□ 1.38
CTNND1-238ENST00000534647 CECR2Q9BXF3 1484 aa23.63■■□□□ 1.37
CTNND1-238ENST00000534647 EIF4G1Q04637 1599 aaKnown RBP23.59■■□□□ 1.37
CTNND1-238ENST00000534647 NCAPD3P42695 1498 aa22.9■■□□□ 1.26
CTNND1-238ENST00000534647 DNAJC5Q9H3Z4 198 aa22.83■■□□□ 1.25
CTNND1-238ENST00000534647 ATAD2BQ9ULI0 1458 aa22.77■■□□□ 1.24
CTNND1-238ENST00000534647 SMARCA2P51531 1590 aa22.69■■□□□ 1.22
CTNND1-238ENST00000534647 CUX2O14529 1486 aa22.68■■□□□ 1.22
CTNND1-238ENST00000534647 HMGXB3Q12766 1538 aa22.67■■□□□ 1.22
CTNND1-238ENST00000534647 SMARCA4P51532 1647 aa22.66■■□□□ 1.22
CTNND1-238ENST00000534647 ERCC6Q03468 1493 aa22.6■■□□□ 1.21
CTNND1-238ENST00000534647 BAZ1AQ9NRL2 1556 aaPredicted RBP22.57■■□□□ 1.2
CTNND1-238ENST00000534647 PEG3Q9GZU2 1588 aa22.52■■□□□ 1.2
CTNND1-238ENST00000534647 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
CTNND1-238ENST00000534647 NESP48681 1621 aa22.46■■□□□ 1.19
CTNND1-238ENST00000534647 MROH2BQ7Z745 1585 aa22.38■■□□□ 1.17
CTNND1-238ENST00000534647 LAMC3Q9Y6N6 1575 aa22.33■■□□□ 1.17
CTNND1-238ENST00000534647 THOC2Q8NI27 1593 aaKnown RBP22.25■■□□□ 1.15
CTNND1-238ENST00000534647 PDS5BQ9NTI5 1447 aa22.24■■□□□ 1.15
CTNND1-238ENST00000534647 CADPSQ9ULU8 1353 aa22.18■■□□□ 1.14
CTNND1-238ENST00000534647 KIF21AQ7Z4S6 1674 aa22.11■■□□□ 1.13
CTNND1-238ENST00000534647 WIZO95785 1651 aa22.04■■□□□ 1.12
CTNND1-238ENST00000534647 MRC2Q9UBG0 1479 aa22.02■■□□□ 1.12
CTNND1-238ENST00000534647 PHF23Q9BUL5 403 aaPredicted RBP22.01■■□□□ 1.11
CTNND1-238ENST00000534647 WDR62O43379 1518 aa21.96■■□□□ 1.11
CTNND1-238ENST00000534647 RSF1Q96T23 1441 aaPredicted RBP21.92■■□□□ 1.1
CTNND1-238ENST00000534647 CFTRP13569 1480 aa21.9■■□□□ 1.1
CTNND1-238ENST00000534647 CEP164Q9UPV0 1460 aa21.9■■□□□ 1.1
CTNND1-238ENST00000534647 FANCD2Q9BXW9 1451 aa21.88■■□□□ 1.09
CTNND1-238ENST00000534647 TOP2AP11388 1531 aaKnown RBP21.82■■□□□ 1.08
CTNND1-238ENST00000534647 URB2Q14146 1524 aaKnown RBP21.7■■□□□ 1.06
CTNND1-238ENST00000534647 OSCARQ8IYS5 282 aa21.66■■□□□ 1.06
CTNND1-238ENST00000534647 TRIM41Q8WV44 630 aa21.65■■□□□ 1.06
CTNND1-238ENST00000534647 CCDC88BA6NC98 1476 aa21.59■■□□□ 1.05
CTNND1-238ENST00000534647 PRDM2Q13029 1718 aa21.53■■□□□ 1.04
CTNND1-238ENST00000534647 IFT140Q96RY7 1462 aa21.5■■□□□ 1.03
CTNND1-238ENST00000534647 ABCC8Q09428 1581 aa21.46■■□□□ 1.03
CTNND1-238ENST00000534647 TOPBP1Q92547 1522 aa21.45■■□□□ 1.02
CTNND1-238ENST00000534647 ZNF608Q9ULD9 1512 aaPredicted RBP21.43■■□□□ 1.02
CTNND1-238ENST00000534647 DNMBPQ6XZF7 1577 aa21.35■■□□□ 1.01
CTNND1-238ENST00000534647 RIMBP3CA6NJZ7 1639 aa21.27■■□□□ 1
CTNND1-238ENST00000534647 RIMBP3BA6NNM3 1639 aa21.27■■□□□ 1
CTNND1-238ENST00000534647 RIMBP3Q9UFD9 1639 aa21.27■■□□□ 1
CTNND1-238ENST00000534647 EIF4G3O43432 1585 aaKnown RBP21.27■□□□□ 0.99
CTNND1-238ENST00000534647 TARBP1Q13395 1621 aaKnown RBP21.26■□□□□ 0.99
CTNND1-238ENST00000534647 AQRO60306 1485 aaKnown RBP eCLIP21.24■□□□□ 0.997e-8■■■□□ 16
CTNND1-238ENST00000534647 ARHGEF11O15085 1522 aa21.23■□□□□ 0.99
CTNND1-238ENST00000534647 POLA1P09884 1462 aaPredicted RBP21.22■□□□□ 0.99
CTNND1-238ENST00000534647 SOGA1O94964 1423 aa21.15■□□□□ 0.98
CTNND1-238ENST00000534647 RAD54L2Q9Y4B4 1467 aa21.12■□□□□ 0.97
CTNND1-238ENST00000534647 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
CTNND1-238ENST00000534647 CYB5RLQ6IPT4 315 aa21.1■□□□□ 0.97
CTNND1-238ENST00000534647 FBLN2P98095 1184 aa21.09■□□□□ 0.97
CTNND1-238ENST00000534647 CHD1O14646 1710 aa21.08■□□□□ 0.97
CTNND1-238ENST00000534647 WDR97A6NE52 1622 aa21.07■□□□□ 0.96
CTNND1-238ENST00000534647 FGD5Q6ZNL6 1462 aa21.06■□□□□ 0.96
CTNND1-238ENST00000534647 CUX1P39880 1505 aa21.02■□□□□ 0.96
CTNND1-238ENST00000534647 ARAP1Q96P48 1450 aa21.01■□□□□ 0.95
CTNND1-238ENST00000534647 SNAPC4Q5SXM2 1469 aa20.99■□□□□ 0.95
CTNND1-238ENST00000534647 MAGI1Q96QZ7 1491 aaPredicted RBP20.99■□□□□ 0.95
CTNND1-238ENST00000534647 GRIN2BQ13224 1484 aa20.97■□□□□ 0.95
CTNND1-238ENST00000534647 CHMP7Q8WUX9 453 aaPredicted RBP20.97■□□□□ 0.95
CTNND1-238ENST00000534647 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
CTNND1-238ENST00000534647 SYNJ2O15056 1496 aa20.92■□□□□ 0.94
CTNND1-238ENST00000534647 SYNJ1O43426 1573 aa20.9■□□□□ 0.94
CTNND1-238ENST00000534647 GAPVD1Q14C86 1478 aa20.88■□□□□ 0.93
CTNND1-238ENST00000534647 TRHP20396 242 aaPredicted RBP20.86■□□□□ 0.93
CTNND1-238ENST00000534647 ABCA10Q8WWZ4 1543 aa20.86■□□□□ 0.93
CTNND1-238ENST00000534647 PLPPR3Q6T4P5 718 aa20.81■□□□□ 0.92
CTNND1-238ENST00000534647 SUPT5HO00267 1087 aaKnown RBP20.8■□□□□ 0.92
CTNND1-238ENST00000534647 ABCA5Q8WWZ7 1642 aa20.78■□□□□ 0.92
CTNND1-238ENST00000534647 PBRM1Q86U86 1689 aa20.77■□□□□ 0.91
CTNND1-238ENST00000534647 WRNQ14191 1432 aaPredicted RBP eCLIP20.76■□□□□ 0.91
CTNND1-238ENST00000534647 GRIN2AQ12879 1464 aa20.69■□□□□ 0.9
CTNND1-238ENST00000534647 TOP2BQ02880 1626 aa20.67■□□□□ 0.9
CTNND1-238ENST00000534647 NUP160Q12769 1436 aa20.66■□□□□ 0.9
CTNND1-238ENST00000534647 BIVM-ERCC5R4GMW8 1640 aa20.65■□□□□ 0.9
CTNND1-238ENST00000534647 FHAD1B1AJZ9 1412 aa20.63■□□□□ 0.89
CTNND1-238ENST00000534647 ADAMTS12P58397 1594 aa20.61■□□□□ 0.89
CTNND1-238ENST00000534647 ERICH3Q5RHP9 1530 aa20.59■□□□□ 0.89
CTNND1-238ENST00000534647 CEP170Q5SW79 1584 aa20.58■□□□□ 0.88
CTNND1-238ENST00000534647 ERCC6L2Q5T890 1561 aa20.55■□□□□ 0.88
CTNND1-238ENST00000534647 SHROOM2Q13796 1616 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms