RNA–Protein interactions for RNA: ENST00000533774.5

SVIP-205, Transcript of small VCP interacting protein, humanhuman

TSL 3

Gene SVIP, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-205ENST00000533774 NISCHQ9Y2I1 1504 aa31.87■■■□□ 2.69
SVIP-205ENST00000533774 ABCC9O60706 1549 aa29.42■■■□□ 2.3
SVIP-205ENST00000533774 CCDC180Q9P1Z9 1646 aa28.86■■■□□ 2.21
SVIP-205ENST00000533774 DNAJC5BQ9UF47 199 aa28.18■■■□□ 2.1
SVIP-205ENST00000533774 RB1CC1Q8TDY2 1594 aa27.69■■■□□ 2.02
SVIP-205ENST00000533774 NACADO15069 1562 aa27.36■■□□□ 1.97
SVIP-205ENST00000533774 PABPN1Q86U42 306 aaKnown RBP eCLIP27.29■■□□□ 1.96
SVIP-205ENST00000533774 UNC13AQ9UPW8 1703 aa27.28■■□□□ 1.96
SVIP-205ENST00000533774 DCAF8L2P0C7V8 631 aa27.08■■□□□ 1.93
SVIP-205ENST00000533774 AEBP2Q6ZN18 517 aaPredicted RBP27.06■■□□□ 1.92
SVIP-205ENST00000533774 BICRAQ9NZM4 1560 aa27.04■■□□□ 1.92
SVIP-205ENST00000533774 MYO15BQ96JP2 1530 aa26.77■■□□□ 1.88
SVIP-205ENST00000533774 CHIC1Q5VXU3 224 aa26.77■■□□□ 1.88
SVIP-205ENST00000533774 CC2D2AQ9P2K1 1620 aa26.57■■□□□ 1.84
SVIP-205ENST00000533774 CECR2Q9BXF3 1484 aa26.52■■□□□ 1.84
SVIP-205ENST00000533774 SHROOM4Q9ULL8 1493 aa26.42■■□□□ 1.82
SVIP-205ENST00000533774 EIF4G1Q04637 1599 aaKnown RBP26.34■■□□□ 1.81
SVIP-205ENST00000533774 SCRIBQ14160 1630 aa26.29■■□□□ 1.8
SVIP-205ENST00000533774 ZCCHC6Q5VYS8 1495 aaKnown RBP26.29■■□□□ 1.8
SVIP-205ENST00000533774 DCAF1Q9Y4B6 1507 aa26.24■■□□□ 1.79
SVIP-205ENST00000533774 DNAJC5Q9H3Z4 198 aa26.18■■□□□ 1.78
SVIP-205ENST00000533774 CUX2O14529 1486 aa25.51■■□□□ 1.67
SVIP-205ENST00000533774 ERCC6Q03468 1493 aa25.35■■□□□ 1.65
SVIP-205ENST00000533774 NCAPD3P42695 1498 aa25.28■■□□□ 1.64
SVIP-205ENST00000533774 NESP48681 1621 aa25.16■■□□□ 1.62
SVIP-205ENST00000533774 ATAD2BQ9ULI0 1458 aa25.15■■□□□ 1.62
SVIP-205ENST00000533774 HMGXB3Q12766 1538 aa25.04■■□□□ 1.6
SVIP-205ENST00000533774 THOC2Q8NI27 1593 aaKnown RBP25.01■■□□□ 1.59
SVIP-205ENST00000533774 SMARCA4P51532 1647 aa25.01■■□□□ 1.59
SVIP-205ENST00000533774 SMARCA2P51531 1590 aa25■■□□□ 1.59
SVIP-205ENST00000533774 KIF21AQ7Z4S6 1674 aa24.85■■□□□ 1.57
SVIP-205ENST00000533774 BAZ1BQ9UIG0 1483 aaKnown RBP24.83■■□□□ 1.57
SVIP-205ENST00000533774 LAMC3Q9Y6N6 1575 aa24.8■■□□□ 1.56
SVIP-205ENST00000533774 TRIM41Q8WV44 630 aa24.79■■□□□ 1.56
SVIP-205ENST00000533774 PEG3Q9GZU2 1588 aa24.75■■□□□ 1.55
SVIP-205ENST00000533774 BAZ1AQ9NRL2 1556 aaPredicted RBP24.73■■□□□ 1.55
SVIP-205ENST00000533774 PDS5BQ9NTI5 1447 aa24.61■■□□□ 1.53
SVIP-205ENST00000533774 MROH2BQ7Z745 1585 aa24.59■■□□□ 1.53
SVIP-205ENST00000533774 MRC2Q9UBG0 1479 aa24.5■■□□□ 1.51
SVIP-205ENST00000533774 WDR62O43379 1518 aa24.48■■□□□ 1.51
SVIP-205ENST00000533774 CADPSQ9ULU8 1353 aa24.46■■□□□ 1.51
SVIP-205ENST00000533774 WIZO95785 1651 aa24.31■■□□□ 1.48
SVIP-205ENST00000533774 CEP164Q9UPV0 1460 aa24.26■■□□□ 1.47
SVIP-205ENST00000533774 OSCARQ8IYS5 282 aa24.23■■□□□ 1.47
SVIP-205ENST00000533774 FANCD2Q9BXW9 1451 aa24.21■■□□□ 1.47
SVIP-205ENST00000533774 URB2Q14146 1524 aaKnown RBP24.11■■□□□ 1.45
SVIP-205ENST00000533774 RIMBP3CA6NJZ7 1639 aa24.11■■□□□ 1.45
SVIP-205ENST00000533774 RIMBP3BA6NNM3 1639 aa24.11■■□□□ 1.45
SVIP-205ENST00000533774 RIMBP3Q9UFD9 1639 aa24.11■■□□□ 1.45
SVIP-205ENST00000533774 CFTRP13569 1480 aa24.09■■□□□ 1.45
SVIP-205ENST00000533774 ARHGEF11O15085 1522 aa23.92■■□□□ 1.42
SVIP-205ENST00000533774 ZNF608Q9ULD9 1512 aaPredicted RBP23.91■■□□□ 1.42
SVIP-205ENST00000533774 PRDM2Q13029 1718 aa23.91■■□□□ 1.42
SVIP-205ENST00000533774 TOP2AP11388 1531 aaKnown RBP23.87■■□□□ 1.41
SVIP-205ENST00000533774 RSF1Q96T23 1441 aaPredicted RBP23.84■■□□□ 1.41
SVIP-205ENST00000533774 IFT140Q96RY7 1462 aa23.79■■□□□ 1.4
SVIP-205ENST00000533774 CYB5RLQ6IPT4 315 aa23.74■■□□□ 1.39
SVIP-205ENST00000533774 EIF4G3O43432 1585 aaKnown RBP23.74■■□□□ 1.39
SVIP-205ENST00000533774 CHD1O14646 1710 aa23.73■■□□□ 1.39
SVIP-205ENST00000533774 TOPBP1Q92547 1522 aa23.72■■□□□ 1.39
SVIP-205ENST00000533774 ARAP1Q96P48 1450 aa23.68■■□□□ 1.38
SVIP-205ENST00000533774 CCDC88BA6NC98 1476 aa23.63■■□□□ 1.37
SVIP-205ENST00000533774 TRHP20396 242 aaPredicted RBP23.62■■□□□ 1.37
SVIP-205ENST00000533774 TARBP1Q13395 1621 aaKnown RBP23.6■■□□□ 1.37
SVIP-205ENST00000533774 AQRO60306 1485 aaKnown RBP eCLIP23.6■■□□□ 1.37
SVIP-205ENST00000533774 DNMBPQ6XZF7 1577 aa23.57■■□□□ 1.36
SVIP-205ENST00000533774 ABCC8Q09428 1581 aa23.52■■□□□ 1.36
SVIP-205ENST00000533774 PHF23Q9BUL5 403 aaPredicted RBP23.51■■□□□ 1.35
SVIP-205ENST00000533774 FBLN2P98095 1184 aa23.47■■□□□ 1.35
SVIP-205ENST00000533774 POLA1P09884 1462 aaPredicted RBP23.43■■□□□ 1.34
SVIP-205ENST00000533774 RAD54L2Q9Y4B4 1467 aa23.39■■□□□ 1.34
SVIP-205ENST00000533774 CLASP1Q7Z460 1538 aa23.38■■□□□ 1.33
SVIP-205ENST00000533774 TDRD9Q8NDG6 1382 aaKnown RBP23.34■■□□□ 1.33
SVIP-205ENST00000533774 SNAPC4Q5SXM2 1469 aa23.31■■□□□ 1.32
SVIP-205ENST00000533774 SOGA1O94964 1423 aa23.27■■□□□ 1.32
SVIP-205ENST00000533774 SYNJ1O43426 1573 aa23.24■■□□□ 1.31
SVIP-205ENST00000533774 FGD5Q6ZNL6 1462 aa23.21■■□□□ 1.31
SVIP-205ENST00000533774 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
SVIP-205ENST00000533774 CHMP7Q8WUX9 453 aaPredicted RBP23.19■■□□□ 1.3
SVIP-205ENST00000533774 MAGI1Q96QZ7 1491 aaPredicted RBP23.18■■□□□ 1.3
SVIP-205ENST00000533774 CUX1P39880 1505 aa23.13■■□□□ 1.29
SVIP-205ENST00000533774 GRIN2BQ13224 1484 aa23.13■■□□□ 1.29
SVIP-205ENST00000533774 SYNJ2O15056 1496 aa23.12■■□□□ 1.29
SVIP-205ENST00000533774 GAPVD1Q14C86 1478 aa23.12■■□□□ 1.29
SVIP-205ENST00000533774 PBRM1Q86U86 1689 aa23.12■■□□□ 1.29
SVIP-205ENST00000533774 ERCC6L2Q5T890 1561 aa23.05■■□□□ 1.28
SVIP-205ENST00000533774 SENP3Q9H4L4 574 aaPredicted RBP23.04■■□□□ 1.28
SVIP-205ENST00000533774 ABCA5Q8WWZ7 1642 aa22.96■■□□□ 1.27
SVIP-205ENST00000533774 KIF13AQ9H1H9 1805 aa22.93■■□□□ 1.26
SVIP-205ENST00000533774 ABCA10Q8WWZ4 1543 aa22.89■■□□□ 1.26
SVIP-205ENST00000533774 CEP170Q5SW79 1584 aa22.89■■□□□ 1.25
SVIP-205ENST00000533774 GRIN2AQ12879 1464 aa22.86■■□□□ 1.25
SVIP-205ENST00000533774 SHROOM2Q13796 1616 aa22.83■■□□□ 1.25
SVIP-205ENST00000533774 NUP160Q12769 1436 aa22.82■■□□□ 1.24
SVIP-205ENST00000533774 ADAMTS12P58397 1594 aa22.81■■□□□ 1.24
SVIP-205ENST00000533774 FHAD1B1AJZ9 1412 aa22.65■■□□□ 1.22
SVIP-205ENST00000533774 WRNQ14191 1432 aaPredicted RBP eCLIP22.63■■□□□ 1.21
SVIP-205ENST00000533774 PRG4Q92954 1404 aaPredicted RBP22.63■■□□□ 1.21
SVIP-205ENST00000533774 BIVM-ERCC5R4GMW8 1640 aa22.62■■□□□ 1.21
SVIP-205ENST00000533774 ABCC10Q5T3U5 1492 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms