RNA–Protein interactions for RNA: ENST00000533533.5

COPB1-210, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 4

Gene COPB1, Length 537 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-210ENST00000533533 NISCHQ9Y2I1 1504 aa21.84■■□□□ 1.09
COPB1-210ENST00000533533 ABCC9O60706 1549 aa19.76■□□□□ 0.75
COPB1-210ENST00000533533 CCDC180Q9P1Z9 1646 aa19.65■□□□□ 0.74
COPB1-210ENST00000533533 AEBP2Q6ZN18 517 aaPredicted RBP19.37■□□□□ 0.69
COPB1-210ENST00000533533 RB1CC1Q8TDY2 1594 aa18.76■□□□□ 0.59
COPB1-210ENST00000533533 DNAJC5BQ9UF47 199 aa18.66■□□□□ 0.58
COPB1-210ENST00000533533 NACADO15069 1562 aa18.61■□□□□ 0.57
COPB1-210ENST00000533533 DCAF8L2P0C7V8 631 aa18.48■□□□□ 0.55
COPB1-210ENST00000533533 CHIC1Q5VXU3 224 aa18.46■□□□□ 0.55
COPB1-210ENST00000533533 PABPN1Q86U42 306 aaKnown RBP eCLIP18.38■□□□□ 0.53
COPB1-210ENST00000533533 UNC13AQ9UPW8 1703 aa18.37■□□□□ 0.53
COPB1-210ENST00000533533 MYO15BQ96JP2 1530 aa18.32■□□□□ 0.52
COPB1-210ENST00000533533 BICRAQ9NZM4 1560 aa18.22■□□□□ 0.51
COPB1-210ENST00000533533 ZCCHC6Q5VYS8 1495 aaKnown RBP18.06■□□□□ 0.48
COPB1-210ENST00000533533 DCAF1Q9Y4B6 1507 aa18.03■□□□□ 0.48
COPB1-210ENST00000533533 SHROOM4Q9ULL8 1493 aa17.97■□□□□ 0.47
COPB1-210ENST00000533533 SCRIBQ14160 1630 aa17.89■□□□□ 0.45
COPB1-210ENST00000533533 CC2D2AQ9P2K1 1620 aa17.86■□□□□ 0.45
COPB1-210ENST00000533533 CECR2Q9BXF3 1484 aa17.82■□□□□ 0.44
COPB1-210ENST00000533533 EIF4G1Q04637 1599 aaKnown RBP17.79■□□□□ 0.44
COPB1-210ENST00000533533 DNAJC5Q9H3Z4 198 aa17.24■□□□□ 0.35
COPB1-210ENST00000533533 NCAPD3P42695 1498 aa17.18■□□□□ 0.34
COPB1-210ENST00000533533 ATAD2BQ9ULI0 1458 aa17.11■□□□□ 0.33
COPB1-210ENST00000533533 CUX2O14529 1486 aa17.09■□□□□ 0.33
COPB1-210ENST00000533533 ERCC6Q03468 1493 aa17.07■□□□□ 0.32
COPB1-210ENST00000533533 SMARCA4P51532 1647 aa17.06■□□□□ 0.32
COPB1-210ENST00000533533 SMARCA2P51531 1590 aa17.06■□□□□ 0.32
COPB1-210ENST00000533533 HMGXB3Q12766 1538 aa17.04■□□□□ 0.32
COPB1-210ENST00000533533 BAZ1AQ9NRL2 1556 aaPredicted RBP16.95■□□□□ 0.3
COPB1-210ENST00000533533 NESP48681 1621 aa16.95■□□□□ 0.3
COPB1-210ENST00000533533 BAZ1BQ9UIG0 1483 aaKnown RBP16.93■□□□□ 0.3
COPB1-210ENST00000533533 PEG3Q9GZU2 1588 aa16.9■□□□□ 0.3
COPB1-210ENST00000533533 MROH2BQ7Z745 1585 aa16.82■□□□□ 0.28
COPB1-210ENST00000533533 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
COPB1-210ENST00000533533 THOC2Q8NI27 1593 aaKnown RBP16.8■□□□□ 0.28
COPB1-210ENST00000533533 KIF21AQ7Z4S6 1674 aa16.74■□□□□ 0.27
COPB1-210ENST00000533533 PDS5BQ9NTI5 1447 aa16.71■□□□□ 0.27
COPB1-210ENST00000533533 CADPSQ9ULU8 1353 aa16.65■□□□□ 0.26
COPB1-210ENST00000533533 WIZO95785 1651 aa16.62■□□□□ 0.25
COPB1-210ENST00000533533 SENP3Q9H4L4 574 aaPredicted RBP16.59■□□□□ 0.25
COPB1-210ENST00000533533 MRC2Q9UBG0 1479 aa16.57■□□□□ 0.24
COPB1-210ENST00000533533 WDR62O43379 1518 aa16.55■□□□□ 0.24
COPB1-210ENST00000533533 CEP164Q9UPV0 1460 aa16.48■□□□□ 0.23
COPB1-210ENST00000533533 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
COPB1-210ENST00000533533 CFTRP13569 1480 aa16.44■□□□□ 0.22
COPB1-210ENST00000533533 RSF1Q96T23 1441 aaPredicted RBP16.43■□□□□ 0.22
COPB1-210ENST00000533533 TRIM41Q8WV44 630 aa16.41■□□□□ 0.22
COPB1-210ENST00000533533 TOP2AP11388 1531 aaKnown RBP16.39■□□□□ 0.21
COPB1-210ENST00000533533 PHF23Q9BUL5 403 aaPredicted RBP16.35■□□□□ 0.21
COPB1-210ENST00000533533 URB2Q14146 1524 aaKnown RBP16.33■□□□□ 0.2
COPB1-210ENST00000533533 OSCARQ8IYS5 282 aa16.3■□□□□ 0.2
COPB1-210ENST00000533533 PRDM2Q13029 1718 aa16.29■□□□□ 0.2
COPB1-210ENST00000533533 CCDC88BA6NC98 1476 aa16.21■□□□□ 0.19
COPB1-210ENST00000533533 IFT140Q96RY7 1462 aa16.16■□□□□ 0.18
COPB1-210ENST00000533533 ZNF608Q9ULD9 1512 aaPredicted RBP16.15■□□□□ 0.18
COPB1-210ENST00000533533 TOPBP1Q92547 1522 aa16.14■□□□□ 0.17
COPB1-210ENST00000533533 ABCC8Q09428 1581 aa16.1■□□□□ 0.17
COPB1-210ENST00000533533 RIMBP3CA6NJZ7 1639 aa16.09■□□□□ 0.17
COPB1-210ENST00000533533 RIMBP3BA6NNM3 1639 aa16.09■□□□□ 0.17
COPB1-210ENST00000533533 RIMBP3Q9UFD9 1639 aa16.09■□□□□ 0.17
COPB1-210ENST00000533533 DNMBPQ6XZF7 1577 aa16.06■□□□□ 0.16
COPB1-210ENST00000533533 EIF4G3O43432 1585 aaKnown RBP16.05■□□□□ 0.16
COPB1-210ENST00000533533 ARHGEF11O15085 1522 aa16.03■□□□□ 0.16
COPB1-210ENST00000533533 TARBP1Q13395 1621 aaKnown RBP16.01■□□□□ 0.15
COPB1-210ENST00000533533 AQRO60306 1485 aaKnown RBP eCLIP15.99■□□□□ 0.155e-9■■■■□ 26.6
COPB1-210ENST00000533533 CHD1O14646 1710 aa15.98■□□□□ 0.15
COPB1-210ENST00000533533 POLA1P09884 1462 aaPredicted RBP15.97■□□□□ 0.15
COPB1-210ENST00000533533 CYB5RLQ6IPT4 315 aa15.93■□□□□ 0.14
COPB1-210ENST00000533533 FBLN2P98095 1184 aa15.91■□□□□ 0.14
COPB1-210ENST00000533533 RAD54L2Q9Y4B4 1467 aa15.91■□□□□ 0.14
COPB1-210ENST00000533533 SOGA1O94964 1423 aa15.88■□□□□ 0.13
COPB1-210ENST00000533533 TDRD9Q8NDG6 1382 aaKnown RBP15.87■□□□□ 0.13
COPB1-210ENST00000533533 ARAP1Q96P48 1450 aa15.86■□□□□ 0.13
COPB1-210ENST00000533533 FGD5Q6ZNL6 1462 aa15.84■□□□□ 0.13
COPB1-210ENST00000533533 WDR97A6NE52 1622 aa15.83■□□□□ 0.13
COPB1-210ENST00000533533 CUX1P39880 1505 aa15.81■□□□□ 0.12
COPB1-210ENST00000533533 SNAPC4Q5SXM2 1469 aa15.81■□□□□ 0.12
COPB1-210ENST00000533533 MAGI1Q96QZ7 1491 aaPredicted RBP15.78■□□□□ 0.12
COPB1-210ENST00000533533 CHMP7Q8WUX9 453 aaPredicted RBP15.78■□□□□ 0.12
COPB1-210ENST00000533533 CLASP1Q7Z460 1538 aa15.78■□□□□ 0.12
COPB1-210ENST00000533533 TRHP20396 242 aaPredicted RBP15.77■□□□□ 0.12
COPB1-210ENST00000533533 GRIN2BQ13224 1484 aa15.77■□□□□ 0.11
COPB1-210ENST00000533533 SYNJ1O43426 1573 aa15.75■□□□□ 0.11
COPB1-210ENST00000533533 SYNJ2O15056 1496 aa15.72■□□□□ 0.11
COPB1-210ENST00000533533 PBRM1Q86U86 1689 aa15.7■□□□□ 0.1
COPB1-210ENST00000533533 GAPVD1Q14C86 1478 aa15.7■□□□□ 0.1
COPB1-210ENST00000533533 ABCA10Q8WWZ4 1543 aa15.66■□□□□ 0.1
COPB1-210ENST00000533533 ABCA5Q8WWZ7 1642 aa15.65■□□□□ 0.1
COPB1-210ENST00000533533 SUPT5HO00267 1087 aaKnown RBP15.61■□□□□ 0.09
COPB1-210ENST00000533533 WRNQ14191 1432 aaPredicted RBP eCLIP15.58■□□□□ 0.08
COPB1-210ENST00000533533 GRIN2AQ12879 1464 aa15.56■□□□□ 0.08
COPB1-210ENST00000533533 ADAMTS12P58397 1594 aa15.53■□□□□ 0.08
COPB1-210ENST00000533533 TOP2BQ02880 1626 aa15.53■□□□□ 0.08
COPB1-210ENST00000533533 BIVM-ERCC5R4GMW8 1640 aa15.53■□□□□ 0.08
COPB1-210ENST00000533533 ERCC6L2Q5T890 1561 aa15.52■□□□□ 0.07
COPB1-210ENST00000533533 NUP160Q12769 1436 aa15.51■□□□□ 0.07
COPB1-210ENST00000533533 CEP170Q5SW79 1584 aa15.51■□□□□ 0.07
COPB1-210ENST00000533533 FHAD1B1AJZ9 1412 aa15.49■□□□□ 0.07
COPB1-210ENST00000533533 SHROOM2Q13796 1616 aa15.47■□□□□ 0.07
COPB1-210ENST00000533533 ERICH3Q5RHP9 1530 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms