RNA–Protein interactions for RNA: ENST00000530809.2

VPS11-204, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-204ENST00000530809 NISCHQ9Y2I1 1504 aa13.64□□□□□ -0.23
VPS11-204ENST00000530809 ABCC9O60706 1549 aa12.53□□□□□ -0.4
VPS11-204ENST00000530809 CCDC180Q9P1Z9 1646 aa12.48□□□□□ -0.41
VPS11-204ENST00000530809 AEBP2Q6ZN18 517 aaPredicted RBP12.12□□□□□ -0.47
VPS11-204ENST00000530809 CHIC1Q5VXU3 224 aa12.08□□□□□ -0.48
VPS11-204ENST00000530809 RB1CC1Q8TDY2 1594 aa11.93□□□□□ -0.5
VPS11-204ENST00000530809 DNAJC5BQ9UF47 199 aa11.88□□□□□ -0.51
VPS11-204ENST00000530809 NACADO15069 1562 aa11.79□□□□□ -0.52
VPS11-204ENST00000530809 UNC13AQ9UPW8 1703 aa11.71□□□□□ -0.54
VPS11-204ENST00000530809 MYO15BQ96JP2 1530 aa11.56□□□□□ -0.56
VPS11-204ENST00000530809 PABPN1Q86U42 306 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS11-204ENST00000530809 BICRAQ9NZM4 1560 aa11.54□□□□□ -0.56
VPS11-204ENST00000530809 DCAF8L2P0C7V8 631 aa11.5□□□□□ -0.57
VPS11-204ENST00000530809 SHROOM4Q9ULL8 1493 aa11.45□□□□□ -0.58
VPS11-204ENST00000530809 CC2D2AQ9P2K1 1620 aa11.38□□□□□ -0.59
VPS11-204ENST00000530809 CECR2Q9BXF3 1484 aa11.34□□□□□ -0.59
VPS11-204ENST00000530809 DCAF1Q9Y4B6 1507 aa11.31□□□□□ -0.6
VPS11-204ENST00000530809 EIF4G1Q04637 1599 aaKnown RBP11.28□□□□□ -0.6
VPS11-204ENST00000530809 ZCCHC6Q5VYS8 1495 aaKnown RBP11.26□□□□□ -0.61
VPS11-204ENST00000530809 SCRIBQ14160 1630 aa11.24□□□□□ -0.61
VPS11-204ENST00000530809 DNAJC5Q9H3Z4 198 aa11.15□□□□□ -0.62
VPS11-204ENST00000530809 CUX2O14529 1486 aa10.99□□□□□ -0.65
VPS11-204ENST00000530809 ERCC6Q03468 1493 aa10.87□□□□□ -0.67
VPS11-204ENST00000530809 NCAPD3P42695 1498 aa10.83□□□□□ -0.68
VPS11-204ENST00000530809 HMGXB3Q12766 1538 aa10.79□□□□□ -0.68
VPS11-204ENST00000530809 SMARCA2P51531 1590 aa10.77□□□□□ -0.68
VPS11-204ENST00000530809 ATAD2BQ9ULI0 1458 aa10.74□□□□□ -0.69
VPS11-204ENST00000530809 SMARCA4P51532 1647 aa10.73□□□□□ -0.69
VPS11-204ENST00000530809 THOC2Q8NI27 1593 aaKnown RBP10.73□□□□□ -0.69
VPS11-204ENST00000530809 LAMC3Q9Y6N6 1575 aa10.69□□□□□ -0.7
VPS11-204ENST00000530809 NESP48681 1621 aa10.69□□□□□ -0.7
VPS11-204ENST00000530809 PEG3Q9GZU2 1588 aa10.65□□□□□ -0.7
VPS11-204ENST00000530809 BAZ1BQ9UIG0 1483 aaKnown RBP10.65□□□□□ -0.7
VPS11-204ENST00000530809 KIF21AQ7Z4S6 1674 aa10.65□□□□□ -0.7
VPS11-204ENST00000530809 BAZ1AQ9NRL2 1556 aaPredicted RBP10.65□□□□□ -0.71
VPS11-204ENST00000530809 PHF23Q9BUL5 403 aaPredicted RBP10.64□□□□□ -0.71
VPS11-204ENST00000530809 PDS5BQ9NTI5 1447 aa10.58□□□□□ -0.72
VPS11-204ENST00000530809 TRIM41Q8WV44 630 aa10.52□□□□□ -0.73
VPS11-204ENST00000530809 WDR62O43379 1518 aa10.51□□□□□ -0.73
VPS11-204ENST00000530809 MRC2Q9UBG0 1479 aa10.5□□□□□ -0.73
VPS11-204ENST00000530809 MROH2BQ7Z745 1585 aa10.48□□□□□ -0.73
VPS11-204ENST00000530809 CADPSQ9ULU8 1353 aa10.47□□□□□ -0.73
VPS11-204ENST00000530809 CEP164Q9UPV0 1460 aa10.42□□□□□ -0.74
VPS11-204ENST00000530809 WIZO95785 1651 aa10.38□□□□□ -0.75
VPS11-204ENST00000530809 FANCD2Q9BXW9 1451 aa10.36□□□□□ -0.75
VPS11-204ENST00000530809 PRDM2Q13029 1718 aa10.36□□□□□ -0.75
VPS11-204ENST00000530809 OSCARQ8IYS5 282 aa10.36□□□□□ -0.75
VPS11-204ENST00000530809 RIMBP3CA6NJZ7 1639 aa10.33□□□□□ -0.76
VPS11-204ENST00000530809 RIMBP3BA6NNM3 1639 aa10.33□□□□□ -0.76
VPS11-204ENST00000530809 RIMBP3Q9UFD9 1639 aa10.33□□□□□ -0.76
VPS11-204ENST00000530809 CFTRP13569 1480 aa10.32□□□□□ -0.76
VPS11-204ENST00000530809 URB2Q14146 1524 aaKnown RBP10.28□□□□□ -0.76
VPS11-204ENST00000530809 SENP3Q9H4L4 574 aaPredicted RBP10.27□□□□□ -0.77
VPS11-204ENST00000530809 TOP2AP11388 1531 aaKnown RBP10.25□□□□□ -0.77
VPS11-204ENST00000530809 ARHGEF11O15085 1522 aa10.24□□□□□ -0.77
VPS11-204ENST00000530809 IFT140Q96RY7 1462 aa10.22□□□□□ -0.77
VPS11-204ENST00000530809 CHD1O14646 1710 aa10.19□□□□□ -0.78
VPS11-204ENST00000530809 EIF4G3O43432 1585 aaKnown RBP10.18□□□□□ -0.78
VPS11-204ENST00000530809 ABCC8Q09428 1581 aa10.17□□□□□ -0.78
VPS11-204ENST00000530809 ZNF608Q9ULD9 1512 aaPredicted RBP10.17□□□□□ -0.78
VPS11-204ENST00000530809 RSF1Q96T23 1441 aaPredicted RBP10.16□□□□□ -0.78
VPS11-204ENST00000530809 TOPBP1Q92547 1522 aa10.15□□□□□ -0.78
VPS11-204ENST00000530809 DNMBPQ6XZF7 1577 aa10.13□□□□□ -0.79
VPS11-204ENST00000530809 TARBP1Q13395 1621 aaKnown RBP10.11□□□□□ -0.79
VPS11-204ENST00000530809 ARAP1Q96P48 1450 aa10.1□□□□□ -0.79
VPS11-204ENST00000530809 CYB5RLQ6IPT4 315 aa10.09□□□□□ -0.79
VPS11-204ENST00000530809 TRHP20396 242 aaPredicted RBP10.08□□□□□ -0.8
VPS11-204ENST00000530809 CCDC88BA6NC98 1476 aa10.07□□□□□ -0.8
VPS11-204ENST00000530809 WDR97A6NE52 1622 aa10.07□□□□□ -0.8
VPS11-204ENST00000530809 AQRO60306 1485 aaKnown RBP eCLIP10.04□□□□□ -0.86e-11■■■■□ 25.1
VPS11-204ENST00000530809 SYNJ1O43426 1573 aa10.02□□□□□ -0.81
VPS11-204ENST00000530809 POLA1P09884 1462 aaPredicted RBP10.02□□□□□ -0.81
VPS11-204ENST00000530809 CLASP1Q7Z460 1538 aa10.02□□□□□ -0.81
VPS11-204ENST00000530809 FBLN2P98095 1184 aa10□□□□□ -0.81
VPS11-204ENST00000530809 MAGI1Q96QZ7 1491 aaPredicted RBP9.98□□□□□ -0.81
VPS11-204ENST00000530809 SNAPC4Q5SXM2 1469 aa9.97□□□□□ -0.81
VPS11-204ENST00000530809 PBRM1Q86U86 1689 aa9.96□□□□□ -0.82
VPS11-204ENST00000530809 SOGA1O94964 1423 aa9.95□□□□□ -0.82
VPS11-204ENST00000530809 RAD54L2Q9Y4B4 1467 aa9.94□□□□□ -0.82
VPS11-204ENST00000530809 PLPPR3Q6T4P5 718 aa9.94□□□□□ -0.82
VPS11-204ENST00000530809 SYNJ2O15056 1496 aa9.93□□□□□ -0.82
VPS11-204ENST00000530809 GRIN2BQ13224 1484 aa9.92□□□□□ -0.82
VPS11-204ENST00000530809 FGD5Q6ZNL6 1462 aa9.92□□□□□ -0.82
VPS11-204ENST00000530809 TDRD9Q8NDG6 1382 aaKnown RBP9.92□□□□□ -0.82
VPS11-204ENST00000530809 CHMP7Q8WUX9 453 aaPredicted RBP9.91□□□□□ -0.82
VPS11-204ENST00000530809 GAPVD1Q14C86 1478 aa9.89□□□□□ -0.83
VPS11-204ENST00000530809 CUX1P39880 1505 aa9.87□□□□□ -0.83
VPS11-204ENST00000530809 ABCA5Q8WWZ7 1642 aa9.86□□□□□ -0.83
VPS11-204ENST00000530809 KIF13AQ9H1H9 1805 aa9.84□□□□□ -0.83
VPS11-204ENST00000530809 SHROOM2Q13796 1616 aa9.82□□□□□ -0.84
VPS11-204ENST00000530809 ABCA10Q8WWZ4 1543 aa9.82□□□□□ -0.84
VPS11-204ENST00000530809 GRIN2AQ12879 1464 aa9.8□□□□□ -0.84
VPS11-204ENST00000530809 CEP170Q5SW79 1584 aa9.8□□□□□ -0.84
VPS11-204ENST00000530809 ADAMTS12P58397 1594 aa9.79□□□□□ -0.84
VPS11-204ENST00000530809 ERCC6L2Q5T890 1561 aa9.79□□□□□ -0.84
VPS11-204ENST00000530809 NUP160Q12769 1436 aa9.77□□□□□ -0.85
VPS11-204ENST00000530809 BIVM-ERCC5R4GMW8 1640 aa9.74□□□□□ -0.85
VPS11-204ENST00000530809 ERICH3Q5RHP9 1530 aa9.72□□□□□ -0.85
VPS11-204ENST00000530809 FHAD1B1AJZ9 1412 aa9.72□□□□□ -0.85
VPS11-204ENST00000530809 WRNQ14191 1432 aaPredicted RBP eCLIP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms