RNA–Protein interactions for RNA: ENST00000523015.1

DENND3-218, Transcript of DENN domain containing 3, humanhuman

TSL 2

Gene DENND3, Length 402 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND3-218ENST00000523015 NISCHQ9Y2I1 1504 aa16.98■□□□□ 0.31
DENND3-218ENST00000523015 AEBP2Q6ZN18 517 aaPredicted RBP16.12■□□□□ 0.17
DENND3-218ENST00000523015 ABCC9O60706 1549 aa16.03■□□□□ 0.16
DENND3-218ENST00000523015 CHIC1Q5VXU3 224 aa16.02■□□□□ 0.16
DENND3-218ENST00000523015 CCDC180Q9P1Z9 1646 aa15.56■□□□□ 0.08
DENND3-218ENST00000523015 DNAJC5BQ9UF47 199 aa15.41■□□□□ 0.06
DENND3-218ENST00000523015 RB1CC1Q8TDY2 1594 aa15.02□□□□□ -0.01
DENND3-218ENST00000523015 UNC13AQ9UPW8 1703 aa14.77□□□□□ -0.05
DENND3-218ENST00000523015 PABPN1Q86U42 306 aaKnown RBP eCLIP14.76□□□□□ -0.05
DENND3-218ENST00000523015 NACADO15069 1562 aa14.76□□□□□ -0.05
DENND3-218ENST00000523015 BICRAQ9NZM4 1560 aa14.62□□□□□ -0.07
DENND3-218ENST00000523015 DNAJC5Q9H3Z4 198 aa14.51□□□□□ -0.09
DENND3-218ENST00000523015 CECR2Q9BXF3 1484 aa14.48□□□□□ -0.09
DENND3-218ENST00000523015 CC2D2AQ9P2K1 1620 aa14.48□□□□□ -0.09
DENND3-218ENST00000523015 DCAF8L2P0C7V8 631 aa14.45□□□□□ -0.1
DENND3-218ENST00000523015 MYO15BQ96JP2 1530 aa14.35□□□□□ -0.11
DENND3-218ENST00000523015 SHROOM4Q9ULL8 1493 aa14.34□□□□□ -0.11
DENND3-218ENST00000523015 EIF4G1Q04637 1599 aaKnown RBP14.3□□□□□ -0.12
DENND3-218ENST00000523015 SCRIBQ14160 1630 aa14.16□□□□□ -0.14
DENND3-218ENST00000523015 CUX2O14529 1486 aa14.02□□□□□ -0.16
DENND3-218ENST00000523015 ZCCHC6Q5VYS8 1495 aaKnown RBP14□□□□□ -0.17
DENND3-218ENST00000523015 PHF23Q9BUL5 403 aaPredicted RBP13.98□□□□□ -0.17
DENND3-218ENST00000523015 DCAF1Q9Y4B6 1507 aa13.98□□□□□ -0.17
DENND3-218ENST00000523015 ERCC6Q03468 1493 aa13.88□□□□□ -0.19
DENND3-218ENST00000523015 SENP3Q9H4L4 574 aaPredicted RBP13.84□□□□□ -0.19
DENND3-218ENST00000523015 TRIM41Q8WV44 630 aa13.73□□□□□ -0.21
DENND3-218ENST00000523015 THOC2Q8NI27 1593 aaKnown RBP13.66□□□□□ -0.22
DENND3-218ENST00000523015 NESP48681 1621 aa13.62□□□□□ -0.23
DENND3-218ENST00000523015 NCAPD3P42695 1498 aa13.58□□□□□ -0.24
DENND3-218ENST00000523015 SMARCA2P51531 1590 aa13.55□□□□□ -0.24
DENND3-218ENST00000523015 HMGXB3Q12766 1538 aa13.52□□□□□ -0.25
DENND3-218ENST00000523015 KIF21AQ7Z4S6 1674 aa13.5□□□□□ -0.25
DENND3-218ENST00000523015 ATAD2BQ9ULI0 1458 aa13.5□□□□□ -0.25
DENND3-218ENST00000523015 LAMC3Q9Y6N6 1575 aa13.43□□□□□ -0.26
DENND3-218ENST00000523015 SMARCA4P51532 1647 aa13.42□□□□□ -0.26
DENND3-218ENST00000523015 BAZ1AQ9NRL2 1556 aaPredicted RBP13.41□□□□□ -0.26
DENND3-218ENST00000523015 BAZ1BQ9UIG0 1483 aaKnown RBP13.38□□□□□ -0.27
DENND3-218ENST00000523015 PDS5BQ9NTI5 1447 aa13.31□□□□□ -0.28
DENND3-218ENST00000523015 WDR62O43379 1518 aa13.31□□□□□ -0.28
DENND3-218ENST00000523015 MRC2Q9UBG0 1479 aa13.29□□□□□ -0.28
DENND3-218ENST00000523015 PEG3Q9GZU2 1588 aa13.26□□□□□ -0.29
DENND3-218ENST00000523015 RIMBP3CA6NJZ7 1639 aa13.24□□□□□ -0.29
DENND3-218ENST00000523015 RIMBP3BA6NNM3 1639 aa13.24□□□□□ -0.29
DENND3-218ENST00000523015 RIMBP3Q9UFD9 1639 aa13.24□□□□□ -0.29
DENND3-218ENST00000523015 OSCARQ8IYS5 282 aa13.16□□□□□ -0.3
DENND3-218ENST00000523015 CEP164Q9UPV0 1460 aa13.14□□□□□ -0.31
DENND3-218ENST00000523015 CADPSQ9ULU8 1353 aa13.13□□□□□ -0.31
DENND3-218ENST00000523015 PLPPR3Q6T4P5 718 aa13.12□□□□□ -0.31
DENND3-218ENST00000523015 ARHGEF11O15085 1522 aa13.11□□□□□ -0.31
DENND3-218ENST00000523015 MROH2BQ7Z745 1585 aa13.1□□□□□ -0.31
DENND3-218ENST00000523015 FANCD2Q9BXW9 1451 aa13.05□□□□□ -0.32
DENND3-218ENST00000523015 URB2Q14146 1524 aaKnown RBP13□□□□□ -0.33
DENND3-218ENST00000523015 TRHP20396 242 aaPredicted RBP12.97□□□□□ -0.33
DENND3-218ENST00000523015 ARAP1Q96P48 1450 aa12.96□□□□□ -0.34
DENND3-218ENST00000523015 WIZO95785 1651 aa12.95□□□□□ -0.34
DENND3-218ENST00000523015 CYB5RLQ6IPT4 315 aa12.93□□□□□ -0.34
DENND3-218ENST00000523015 ZNF608Q9ULD9 1512 aaPredicted RBP12.93□□□□□ -0.34
DENND3-218ENST00000523015 CHD1O14646 1710 aa12.91□□□□□ -0.34
DENND3-218ENST00000523015 CFTRP13569 1480 aa12.91□□□□□ -0.34
DENND3-218ENST00000523015 EIF4G3O43432 1585 aaKnown RBP12.9□□□□□ -0.34
DENND3-218ENST00000523015 PRDM2Q13029 1718 aa12.88□□□□□ -0.35
DENND3-218ENST00000523015 IFT140Q96RY7 1462 aa12.86□□□□□ -0.35
DENND3-218ENST00000523015 RSF1Q96T23 1441 aaPredicted RBP12.81□□□□□ -0.36
DENND3-218ENST00000523015 TOPBP1Q92547 1522 aa12.76□□□□□ -0.37
DENND3-218ENST00000523015 TOP2AP11388 1531 aaKnown RBP12.75□□□□□ -0.37
DENND3-218ENST00000523015 TARBP1Q13395 1621 aaKnown RBP12.71□□□□□ -0.37
DENND3-218ENST00000523015 CLASP1Q7Z460 1538 aa12.7□□□□□ -0.38
DENND3-218ENST00000523015 AQRO60306 1485 aaKnown RBP eCLIP12.7□□□□□ -0.38
DENND3-218ENST00000523015 DNMBPQ6XZF7 1577 aa12.69□□□□□ -0.38
DENND3-218ENST00000523015 FBLN2P98095 1184 aa12.68□□□□□ -0.38
DENND3-218ENST00000523015 FOXD1Q16676 465 aa12.68□□□□□ -0.38
DENND3-218ENST00000523015 SYNJ1O43426 1573 aa12.63□□□□□ -0.39
DENND3-218ENST00000523015 ABCC8Q09428 1581 aa12.62□□□□□ -0.39
DENND3-218ENST00000523015 SNAPC4Q5SXM2 1469 aa12.62□□□□□ -0.39
DENND3-218ENST00000523015 POLA1P09884 1462 aaPredicted RBP12.6□□□□□ -0.39
DENND3-218ENST00000523015 GAPVD1Q14C86 1478 aa12.56□□□□□ -0.4
DENND3-218ENST00000523015 RAD54L2Q9Y4B4 1467 aa12.54□□□□□ -0.4
DENND3-218ENST00000523015 CCDC88BA6NC98 1476 aa12.53□□□□□ -0.4
DENND3-218ENST00000523015 WDR97A6NE52 1622 aa12.53□□□□□ -0.4
DENND3-218ENST00000523015 ILDR1Q86SU0 546 aaPredicted RBP12.53□□□□□ -0.4
DENND3-218ENST00000523015 MAGI1Q96QZ7 1491 aaPredicted RBP12.53□□□□□ -0.4
DENND3-218ENST00000523015 KIF13AQ9H1H9 1805 aa12.51□□□□□ -0.41
DENND3-218ENST00000523015 TDRD9Q8NDG6 1382 aaKnown RBP12.51□□□□□ -0.41
DENND3-218ENST00000523015 PBRM1Q86U86 1689 aa12.48□□□□□ -0.41
DENND3-218ENST00000523015 SYNJ2O15056 1496 aa12.48□□□□□ -0.41
DENND3-218ENST00000523015 ERCC6L2Q5T890 1561 aa12.47□□□□□ -0.41
DENND3-218ENST00000523015 CHMP7Q8WUX9 453 aaPredicted RBP12.47□□□□□ -0.41
DENND3-218ENST00000523015 GRIN2BQ13224 1484 aa12.46□□□□□ -0.42
DENND3-218ENST00000523015 SOGA1O94964 1423 aa12.45□□□□□ -0.42
DENND3-218ENST00000523015 FGD5Q6ZNL6 1462 aa12.45□□□□□ -0.42
DENND3-218ENST00000523015 CEP170Q5SW79 1584 aa12.38□□□□□ -0.43
DENND3-218ENST00000523015 ABCA5Q8WWZ7 1642 aa12.36□□□□□ -0.43
DENND3-218ENST00000523015 CUX1P39880 1505 aa12.36□□□□□ -0.43
DENND3-218ENST00000523015 KDM6BO15054 1643 aa12.34□□□□□ -0.43
DENND3-218ENST00000523015 SHROOM2Q13796 1616 aa12.33□□□□□ -0.43
DENND3-218ENST00000523015 KDM4FA0A1W2PPD8 638 aa12.33□□□□□ -0.44
DENND3-218ENST00000523015 GRIN2AQ12879 1464 aa12.32□□□□□ -0.44
DENND3-218ENST00000523015 ADAMTS12P58397 1594 aa12.31□□□□□ -0.44
DENND3-218ENST00000523015 DIP2BQ9P265 1576 aa12.31□□□□□ -0.44
DENND3-218ENST00000523015 ABCC10Q5T3U5 1492 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms