RNA–Protein interactions for RNA: ENST00000520522.1

CTNNA1-224, Transcript of catenin alpha 1, humanhuman

TSL 5

Gene CTNNA1, Length 390 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-224ENST00000520522 NISCHQ9Y2I1 1504 aa22.4■■□□□ 1.18
CTNNA1-224ENST00000520522 CCDC180Q9P1Z9 1646 aa20.13■□□□□ 0.81
CTNNA1-224ENST00000520522 ABCC9O60706 1549 aa20.05■□□□□ 0.8
CTNNA1-224ENST00000520522 AEBP2Q6ZN18 517 aaPredicted RBP19.5■□□□□ 0.71
CTNNA1-224ENST00000520522 CHIC1Q5VXU3 224 aa19.17■□□□□ 0.66
CTNNA1-224ENST00000520522 RB1CC1Q8TDY2 1594 aa19.15■□□□□ 0.66
CTNNA1-224ENST00000520522 NACADO15069 1562 aa19.02■□□□□ 0.64
CTNNA1-224ENST00000520522 MYO15BQ96JP2 1530 aa18.81■□□□□ 0.6
CTNNA1-224ENST00000520522 DCAF8L2P0C7V8 631 aa18.77■□□□□ 0.6
CTNNA1-224ENST00000520522 DNAJC5BQ9UF47 199 aa18.76■□□□□ 0.59
CTNNA1-224ENST00000520522 UNC13AQ9UPW8 1703 aa18.67■□□□□ 0.58
CTNNA1-224ENST00000520522 PABPN1Q86U42 306 aaKnown RBP eCLIP18.62■□□□□ 0.57
CTNNA1-224ENST00000520522 ZCCHC6Q5VYS8 1495 aaKnown RBP18.59■□□□□ 0.57
CTNNA1-224ENST00000520522 BICRAQ9NZM4 1560 aa18.57■□□□□ 0.56
CTNNA1-224ENST00000520522 DCAF1Q9Y4B6 1507 aa18.56■□□□□ 0.56
CTNNA1-224ENST00000520522 SHROOM4Q9ULL8 1493 aa18.42■□□□□ 0.54
CTNNA1-224ENST00000520522 SCRIBQ14160 1630 aa18.28■□□□□ 0.52
CTNNA1-224ENST00000520522 CC2D2AQ9P2K1 1620 aa18.13■□□□□ 0.49
CTNNA1-224ENST00000520522 EIF4G1Q04637 1599 aaKnown RBP18.12■□□□□ 0.49
CTNNA1-224ENST00000520522 CECR2Q9BXF3 1484 aa18.08■□□□□ 0.49
CTNNA1-224ENST00000520522 NCAPD3P42695 1498 aa17.56■□□□□ 0.4
CTNNA1-224ENST00000520522 ATAD2BQ9ULI0 1458 aa17.49■□□□□ 0.39
CTNNA1-224ENST00000520522 SMARCA4P51532 1647 aa17.47■□□□□ 0.39
CTNNA1-224ENST00000520522 SMARCA2P51531 1590 aa17.46■□□□□ 0.39
CTNNA1-224ENST00000520522 HMGXB3Q12766 1538 aa17.46■□□□□ 0.39
CTNNA1-224ENST00000520522 BAZ1AQ9NRL2 1556 aaPredicted RBP17.4■□□□□ 0.38
CTNNA1-224ENST00000520522 CUX2O14529 1486 aa17.35■□□□□ 0.37
CTNNA1-224ENST00000520522 PEG3Q9GZU2 1588 aa17.35■□□□□ 0.37
CTNNA1-224ENST00000520522 ERCC6Q03468 1493 aa17.33■□□□□ 0.37
CTNNA1-224ENST00000520522 BAZ1BQ9UIG0 1483 aaKnown RBP17.31■□□□□ 0.36
CTNNA1-224ENST00000520522 DNAJC5Q9H3Z4 198 aa17.27■□□□□ 0.36
CTNNA1-224ENST00000520522 MROH2BQ7Z745 1585 aa17.23■□□□□ 0.35
CTNNA1-224ENST00000520522 NESP48681 1621 aa17.22■□□□□ 0.35
CTNNA1-224ENST00000520522 LAMC3Q9Y6N6 1575 aa17.16■□□□□ 0.34
CTNNA1-224ENST00000520522 THOC2Q8NI27 1593 aaKnown RBP17.1■□□□□ 0.33
CTNNA1-224ENST00000520522 PDS5BQ9NTI5 1447 aa17.05■□□□□ 0.32
CTNNA1-224ENST00000520522 KIF21AQ7Z4S6 1674 aa17.02■□□□□ 0.32
CTNNA1-224ENST00000520522 WIZO95785 1651 aa17.01■□□□□ 0.31
CTNNA1-224ENST00000520522 CADPSQ9ULU8 1353 aa17.01■□□□□ 0.31
CTNNA1-224ENST00000520522 MRC2Q9UBG0 1479 aa16.91■□□□□ 0.3
CTNNA1-224ENST00000520522 RSF1Q96T23 1441 aaPredicted RBP16.89■□□□□ 0.29
CTNNA1-224ENST00000520522 WDR62O43379 1518 aa16.88■□□□□ 0.29
CTNNA1-224ENST00000520522 TOP2AP11388 1531 aaKnown RBP16.86■□□□□ 0.29
CTNNA1-224ENST00000520522 PHF23Q9BUL5 403 aaPredicted RBP16.84■□□□□ 0.29
CTNNA1-224ENST00000520522 CEP164Q9UPV0 1460 aa16.84■□□□□ 0.29
CTNNA1-224ENST00000520522 CFTRP13569 1480 aa16.83■□□□□ 0.28
CTNNA1-224ENST00000520522 FANCD2Q9BXW9 1451 aa16.8■□□□□ 0.28
CTNNA1-224ENST00000520522 URB2Q14146 1524 aaKnown RBP16.66■□□□□ 0.26
CTNNA1-224ENST00000520522 PRDM2Q13029 1718 aa16.66■□□□□ 0.26
CTNNA1-224ENST00000520522 CCDC88BA6NC98 1476 aa16.61■□□□□ 0.25
CTNNA1-224ENST00000520522 SENP3Q9H4L4 574 aaPredicted RBP16.58■□□□□ 0.24
CTNNA1-224ENST00000520522 IFT140Q96RY7 1462 aa16.51■□□□□ 0.23
CTNNA1-224ENST00000520522 TOPBP1Q92547 1522 aa16.5■□□□□ 0.23
CTNNA1-224ENST00000520522 ABCC8Q09428 1581 aa16.49■□□□□ 0.23
CTNNA1-224ENST00000520522 OSCARQ8IYS5 282 aa16.49■□□□□ 0.23
CTNNA1-224ENST00000520522 TRIM41Q8WV44 630 aa16.45■□□□□ 0.22
CTNNA1-224ENST00000520522 DNMBPQ6XZF7 1577 aa16.45■□□□□ 0.22
CTNNA1-224ENST00000520522 ZNF608Q9ULD9 1512 aaPredicted RBP16.44■□□□□ 0.22
CTNNA1-224ENST00000520522 EIF4G3O43432 1585 aaKnown RBP16.38■□□□□ 0.21
CTNNA1-224ENST00000520522 TARBP1Q13395 1621 aaKnown RBP16.35■□□□□ 0.21
CTNNA1-224ENST00000520522 POLA1P09884 1462 aaPredicted RBP16.33■□□□□ 0.2
CTNNA1-224ENST00000520522 RIMBP3CA6NJZ7 1639 aa16.3■□□□□ 0.2
CTNNA1-224ENST00000520522 RIMBP3BA6NNM3 1639 aa16.3■□□□□ 0.2
CTNNA1-224ENST00000520522 RIMBP3Q9UFD9 1639 aa16.3■□□□□ 0.2
CTNNA1-224ENST00000520522 AQRO60306 1485 aaKnown RBP eCLIP16.28■□□□□ 0.28e-7■■■■■ 28.7
CTNNA1-224ENST00000520522 ARHGEF11O15085 1522 aa16.26■□□□□ 0.19
CTNNA1-224ENST00000520522 WDR97A6NE52 1622 aa16.25■□□□□ 0.19
CTNNA1-224ENST00000520522 CHD1O14646 1710 aa16.23■□□□□ 0.19
CTNNA1-224ENST00000520522 SOGA1O94964 1423 aa16.23■□□□□ 0.19
CTNNA1-224ENST00000520522 RAD54L2Q9Y4B4 1467 aa16.22■□□□□ 0.19
CTNNA1-224ENST00000520522 FGD5Q6ZNL6 1462 aa16.22■□□□□ 0.19
CTNNA1-224ENST00000520522 CUX1P39880 1505 aa16.2■□□□□ 0.18
CTNNA1-224ENST00000520522 TDRD9Q8NDG6 1382 aaKnown RBP16.18■□□□□ 0.18
CTNNA1-224ENST00000520522 SNAPC4Q5SXM2 1469 aa16.15■□□□□ 0.18
CTNNA1-224ENST00000520522 MAGI1Q96QZ7 1491 aaPredicted RBP16.14■□□□□ 0.17
CTNNA1-224ENST00000520522 FBLN2P98095 1184 aa16.13■□□□□ 0.17
CTNNA1-224ENST00000520522 GRIN2BQ13224 1484 aa16.12■□□□□ 0.17
CTNNA1-224ENST00000520522 ARAP1Q96P48 1450 aa16.1■□□□□ 0.17
CTNNA1-224ENST00000520522 CLASP1Q7Z460 1538 aa16.09■□□□□ 0.17
CTNNA1-224ENST00000520522 SYNJ1O43426 1573 aa16.08■□□□□ 0.16
CTNNA1-224ENST00000520522 CYB5RLQ6IPT4 315 aa16.07■□□□□ 0.16
CTNNA1-224ENST00000520522 SYNJ2O15056 1496 aa16.07■□□□□ 0.16
CTNNA1-224ENST00000520522 ABCA10Q8WWZ4 1543 aa16.06■□□□□ 0.16
CTNNA1-224ENST00000520522 SUPT5HO00267 1087 aaKnown RBP16.05■□□□□ 0.16
CTNNA1-224ENST00000520522 CHMP7Q8WUX9 453 aaPredicted RBP16.05■□□□□ 0.16
CTNNA1-224ENST00000520522 GAPVD1Q14C86 1478 aa16.04■□□□□ 0.16
CTNNA1-224ENST00000520522 PBRM1Q86U86 1689 aa16.04■□□□□ 0.16
CTNNA1-224ENST00000520522 ABCA5Q8WWZ7 1642 aa16.03■□□□□ 0.16
CTNNA1-224ENST00000520522 WRNQ14191 1432 aaPredicted RBP eCLIP15.98■□□□□ 0.15
CTNNA1-224ENST00000520522 TOP2BQ02880 1626 aa15.97■□□□□ 0.15
CTNNA1-224ENST00000520522 BIVM-ERCC5R4GMW8 1640 aa15.97■□□□□ 0.15
CTNNA1-224ENST00000520522 ADAMTS12P58397 1594 aa15.91■□□□□ 0.14
CTNNA1-224ENST00000520522 GRIN2AQ12879 1464 aa15.91■□□□□ 0.14
CTNNA1-224ENST00000520522 TRHP20396 242 aaPredicted RBP15.88■□□□□ 0.13
CTNNA1-224ENST00000520522 NUP160Q12769 1436 aa15.87■□□□□ 0.13
CTNNA1-224ENST00000520522 ERICH3Q5RHP9 1530 aa15.87■□□□□ 0.13
CTNNA1-224ENST00000520522 FHAD1B1AJZ9 1412 aa15.86■□□□□ 0.13
CTNNA1-224ENST00000520522 CEP170Q5SW79 1584 aa15.84■□□□□ 0.13
CTNNA1-224ENST00000520522 SHROOM2Q13796 1616 aa15.8■□□□□ 0.12
CTNNA1-224ENST00000520522 ERCC6L2Q5T890 1561 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms