RNA–Protein interactions for RNA: ENST00000519072.5

VDAC3-204, Transcript of voltage dependent anion channel 3, humanhuman

TSL 1 (best)

Gene VDAC3, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VDAC3-204ENST00000519072 NISCHQ9Y2I1 1504 aa34.51■■■■□ 3.12
VDAC3-204ENST00000519072 CCDC180Q9P1Z9 1646 aa31.06■■■□□ 2.56
VDAC3-204ENST00000519072 ABCC9O60706 1549 aa31.06■■■□□ 2.56
VDAC3-204ENST00000519072 AEBP2Q6ZN18 517 aaPredicted RBP30.21■■■□□ 2.43
VDAC3-204ENST00000519072 RB1CC1Q8TDY2 1594 aa29.58■■■□□ 2.33
VDAC3-204ENST00000519072 NACADO15069 1562 aa29.36■■■□□ 2.29
VDAC3-204ENST00000519072 DNAJC5BQ9UF47 199 aa29.19■■■□□ 2.26
VDAC3-204ENST00000519072 DCAF8L2P0C7V8 631 aa29.07■■■□□ 2.24
VDAC3-204ENST00000519072 UNC13AQ9UPW8 1703 aa28.95■■■□□ 2.23
VDAC3-204ENST00000519072 MYO15BQ96JP2 1530 aa28.94■■■□□ 2.22
VDAC3-204ENST00000519072 PABPN1Q86U42 306 aaKnown RBP eCLIP28.86■■■□□ 2.21
VDAC3-204ENST00000519072 CHIC1Q5VXU3 224 aa28.84■■■□□ 2.21
VDAC3-204ENST00000519072 BICRAQ9NZM4 1560 aa28.72■■■□□ 2.19
VDAC3-204ENST00000519072 ZCCHC6Q5VYS8 1495 aaKnown RBP28.59■■■□□ 2.17
VDAC3-204ENST00000519072 DCAF1Q9Y4B6 1507 aa28.53■■■□□ 2.16
VDAC3-204ENST00000519072 SHROOM4Q9ULL8 1493 aa28.35■■■□□ 2.13
VDAC3-204ENST00000519072 SCRIBQ14160 1630 aa28.23■■■□□ 2.11
VDAC3-204ENST00000519072 CC2D2AQ9P2K1 1620 aa28.09■■■□□ 2.09
VDAC3-204ENST00000519072 EIF4G1Q04637 1599 aaKnown RBP28.01■■■□□ 2.07
VDAC3-204ENST00000519072 CECR2Q9BXF3 1484 aa28■■■□□ 2.07
VDAC3-204ENST00000519072 NCAPD3P42695 1498 aa27.09■■□□□ 1.93
VDAC3-204ENST00000519072 ATAD2BQ9ULI0 1458 aa26.99■■□□□ 1.91
VDAC3-204ENST00000519072 SMARCA4P51532 1647 aa26.96■■□□□ 1.91
VDAC3-204ENST00000519072 SMARCA2P51531 1590 aa26.92■■□□□ 1.9
VDAC3-204ENST00000519072 HMGXB3Q12766 1538 aa26.9■■□□□ 1.9
VDAC3-204ENST00000519072 DNAJC5Q9H3Z4 198 aa26.89■■□□□ 1.9
VDAC3-204ENST00000519072 CUX2O14529 1486 aa26.85■■□□□ 1.89
VDAC3-204ENST00000519072 ERCC6Q03468 1493 aa26.82■■□□□ 1.88
VDAC3-204ENST00000519072 BAZ1AQ9NRL2 1556 aaPredicted RBP26.8■■□□□ 1.88
VDAC3-204ENST00000519072 PEG3Q9GZU2 1588 aa26.72■■□□□ 1.87
VDAC3-204ENST00000519072 BAZ1BQ9UIG0 1483 aaKnown RBP26.71■■□□□ 1.87
VDAC3-204ENST00000519072 NESP48681 1621 aa26.66■■□□□ 1.86
VDAC3-204ENST00000519072 MROH2BQ7Z745 1585 aa26.58■■□□□ 1.85
VDAC3-204ENST00000519072 LAMC3Q9Y6N6 1575 aa26.51■■□□□ 1.83
VDAC3-204ENST00000519072 THOC2Q8NI27 1593 aaKnown RBP26.46■■□□□ 1.83
VDAC3-204ENST00000519072 KIF21AQ7Z4S6 1674 aa26.37■■□□□ 1.81
VDAC3-204ENST00000519072 PDS5BQ9NTI5 1447 aa26.33■■□□□ 1.81
VDAC3-204ENST00000519072 WIZO95785 1651 aa26.27■■□□□ 1.8
VDAC3-204ENST00000519072 CADPSQ9ULU8 1353 aa26.24■■□□□ 1.79
VDAC3-204ENST00000519072 MRC2Q9UBG0 1479 aa26.11■■□□□ 1.77
VDAC3-204ENST00000519072 WDR62O43379 1518 aa26.07■■□□□ 1.76
VDAC3-204ENST00000519072 CEP164Q9UPV0 1460 aa25.98■■□□□ 1.75
VDAC3-204ENST00000519072 RSF1Q96T23 1441 aaPredicted RBP25.98■■□□□ 1.75
VDAC3-204ENST00000519072 CFTRP13569 1480 aa25.94■■□□□ 1.74
VDAC3-204ENST00000519072 FANCD2Q9BXW9 1451 aa25.94■■□□□ 1.74
VDAC3-204ENST00000519072 TOP2AP11388 1531 aaKnown RBP25.93■■□□□ 1.74
VDAC3-204ENST00000519072 SENP3Q9H4L4 574 aaPredicted RBP25.79■■□□□ 1.72
VDAC3-204ENST00000519072 PRDM2Q13029 1718 aa25.75■■□□□ 1.71
VDAC3-204ENST00000519072 URB2Q14146 1524 aaKnown RBP25.74■■□□□ 1.71
VDAC3-204ENST00000519072 TRIM41Q8WV44 630 aa25.63■■□□□ 1.69
VDAC3-204ENST00000519072 CCDC88BA6NC98 1476 aa25.62■■□□□ 1.69
VDAC3-204ENST00000519072 OSCARQ8IYS5 282 aa25.56■■□□□ 1.68
VDAC3-204ENST00000519072 PHF23Q9BUL5 403 aaPredicted RBP25.49■■□□□ 1.67
VDAC3-204ENST00000519072 IFT140Q96RY7 1462 aa25.47■■□□□ 1.67
VDAC3-204ENST00000519072 TOPBP1Q92547 1522 aa25.46■■□□□ 1.67
VDAC3-204ENST00000519072 ZNF608Q9ULD9 1512 aaPredicted RBP25.42■■□□□ 1.66
VDAC3-204ENST00000519072 ABCC8Q09428 1581 aa25.41■■□□□ 1.66
VDAC3-204ENST00000519072 DNMBPQ6XZF7 1577 aa25.37■■□□□ 1.65
VDAC3-204ENST00000519072 EIF4G3O43432 1585 aaKnown RBP25.31■■□□□ 1.64
VDAC3-204ENST00000519072 RIMBP3CA6NJZ7 1639 aa25.28■■□□□ 1.64
VDAC3-204ENST00000519072 RIMBP3BA6NNM3 1639 aa25.28■■□□□ 1.64
VDAC3-204ENST00000519072 RIMBP3Q9UFD9 1639 aa25.28■■□□□ 1.64
VDAC3-204ENST00000519072 TARBP1Q13395 1621 aaKnown RBP25.26■■□□□ 1.63
VDAC3-204ENST00000519072 POLA1P09884 1462 aaPredicted RBP25.19■■□□□ 1.62
VDAC3-204ENST00000519072 ARHGEF11O15085 1522 aa25.18■■□□□ 1.62
VDAC3-204ENST00000519072 AQRO60306 1485 aaKnown RBP eCLIP25.17■■□□□ 1.627e-7■■■■□ 24.5
VDAC3-204ENST00000519072 CHD1O14646 1710 aa25.16■■□□□ 1.62
VDAC3-204ENST00000519072 RAD54L2Q9Y4B4 1467 aa25.08■■□□□ 1.6
VDAC3-204ENST00000519072 SOGA1O94964 1423 aa25.05■■□□□ 1.6
VDAC3-204ENST00000519072 WDR97A6NE52 1622 aa25.03■■□□□ 1.6
VDAC3-204ENST00000519072 FGD5Q6ZNL6 1462 aa25.01■■□□□ 1.59
VDAC3-204ENST00000519072 TDRD9Q8NDG6 1382 aaKnown RBP25■■□□□ 1.59
VDAC3-204ENST00000519072 FBLN2P98095 1184 aa24.99■■□□□ 1.59
VDAC3-204ENST00000519072 CUX1P39880 1505 aa24.97■■□□□ 1.59
VDAC3-204ENST00000519072 CYB5RLQ6IPT4 315 aa24.95■■□□□ 1.58
VDAC3-204ENST00000519072 SNAPC4Q5SXM2 1469 aa24.93■■□□□ 1.58
VDAC3-204ENST00000519072 ARAP1Q96P48 1450 aa24.92■■□□□ 1.58
VDAC3-204ENST00000519072 MAGI1Q96QZ7 1491 aaPredicted RBP24.89■■□□□ 1.57
VDAC3-204ENST00000519072 GRIN2BQ13224 1484 aa24.86■■□□□ 1.57
VDAC3-204ENST00000519072 CLASP1Q7Z460 1538 aa24.86■■□□□ 1.57
VDAC3-204ENST00000519072 SYNJ1O43426 1573 aa24.83■■□□□ 1.57
VDAC3-204ENST00000519072 CHMP7Q8WUX9 453 aaPredicted RBP24.81■■□□□ 1.56
VDAC3-204ENST00000519072 PBRM1Q86U86 1689 aa24.8■■□□□ 1.56
VDAC3-204ENST00000519072 SYNJ2O15056 1496 aa24.79■■□□□ 1.56
VDAC3-204ENST00000519072 GAPVD1Q14C86 1478 aa24.76■■□□□ 1.55
VDAC3-204ENST00000519072 ABCA10Q8WWZ4 1543 aa24.74■■□□□ 1.55
VDAC3-204ENST00000519072 ABCA5Q8WWZ7 1642 aa24.73■■□□□ 1.55
VDAC3-204ENST00000519072 SUPT5HO00267 1087 aaKnown RBP24.71■■□□□ 1.55
VDAC3-204ENST00000519072 TRHP20396 242 aaPredicted RBP24.69■■□□□ 1.54
VDAC3-204ENST00000519072 BIVM-ERCC5R4GMW8 1640 aa24.6■■□□□ 1.53
VDAC3-204ENST00000519072 WRNQ14191 1432 aaPredicted RBP eCLIP24.6■■□□□ 1.53
VDAC3-204ENST00000519072 TOP2BQ02880 1626 aa24.58■■□□□ 1.53
VDAC3-204ENST00000519072 GRIN2AQ12879 1464 aa24.55■■□□□ 1.52
VDAC3-204ENST00000519072 ADAMTS12P58397 1594 aa24.54■■□□□ 1.52
VDAC3-204ENST00000519072 NUP160Q12769 1436 aa24.47■■□□□ 1.51
VDAC3-204ENST00000519072 CEP170Q5SW79 1584 aa24.46■■□□□ 1.51
VDAC3-204ENST00000519072 FHAD1B1AJZ9 1412 aa24.44■■□□□ 1.5
VDAC3-204ENST00000519072 ERCC6L2Q5T890 1561 aa24.44■■□□□ 1.5
VDAC3-204ENST00000519072 ERICH3Q5RHP9 1530 aa24.44■■□□□ 1.5
VDAC3-204ENST00000519072 SHROOM2Q13796 1616 aa24.4■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms