RNA–Protein interactions for RNA: ENST00000506632.2

PDLIM5-209, Transcript of PDZ and LIM domain 5, humanhuman

TSL 3

Gene PDLIM5, Length 907 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-209ENST00000506632 NISCHQ9Y2I1 1504 aa22.57■■□□□ 1.2
PDLIM5-209ENST00000506632 CCDC180Q9P1Z9 1646 aa20.16■□□□□ 0.82
PDLIM5-209ENST00000506632 ABCC9O60706 1549 aa19.89■□□□□ 0.77
PDLIM5-209ENST00000506632 RB1CC1Q8TDY2 1594 aa19.06■□□□□ 0.64
PDLIM5-209ENST00000506632 NACADO15069 1562 aa19■□□□□ 0.63
PDLIM5-209ENST00000506632 MYO15BQ96JP2 1530 aa18.86■□□□□ 0.61
PDLIM5-209ENST00000506632 DCAF8L2P0C7V8 631 aa18.81■□□□□ 0.6
PDLIM5-209ENST00000506632 ZCCHC6Q5VYS8 1495 aaKnown RBP18.77■□□□□ 0.59
PDLIM5-209ENST00000506632 DCAF1Q9Y4B6 1507 aa18.69■□□□□ 0.58
PDLIM5-209ENST00000506632 UNC13AQ9UPW8 1703 aa18.64■□□□□ 0.57
PDLIM5-209ENST00000506632 BICRAQ9NZM4 1560 aa18.54■□□□□ 0.56
PDLIM5-209ENST00000506632 PABPN1Q86U42 306 aaKnown RBP eCLIP18.53■□□□□ 0.56
PDLIM5-209ENST00000506632 DNAJC5BQ9UF47 199 aa18.48■□□□□ 0.55
PDLIM5-209ENST00000506632 SCRIBQ14160 1630 aa18.34■□□□□ 0.53
PDLIM5-209ENST00000506632 SHROOM4Q9ULL8 1493 aa18.33■□□□□ 0.52
PDLIM5-209ENST00000506632 EIF4G1Q04637 1599 aaKnown RBP18.04■□□□□ 0.48
PDLIM5-209ENST00000506632 CC2D2AQ9P2K1 1620 aa18■□□□□ 0.47
PDLIM5-209ENST00000506632 CECR2Q9BXF3 1484 aa17.91■□□□□ 0.46
PDLIM5-209ENST00000506632 CHIC1Q5VXU3 224 aa17.9■□□□□ 0.46
PDLIM5-209ENST00000506632 SMARCA4P51532 1647 aa17.55■□□□□ 0.4
PDLIM5-209ENST00000506632 NCAPD3P42695 1498 aa17.55■□□□□ 0.4
PDLIM5-209ENST00000506632 ATAD2BQ9ULI0 1458 aa17.51■□□□□ 0.39
PDLIM5-209ENST00000506632 BAZ1AQ9NRL2 1556 aaPredicted RBP17.49■□□□□ 0.39
PDLIM5-209ENST00000506632 AEBP2Q6ZN18 517 aaPredicted RBP17.48■□□□□ 0.39
PDLIM5-209ENST00000506632 SMARCA2P51531 1590 aa17.48■□□□□ 0.39
PDLIM5-209ENST00000506632 HMGXB3Q12766 1538 aa17.45■□□□□ 0.38
PDLIM5-209ENST00000506632 PEG3Q9GZU2 1588 aa17.41■□□□□ 0.38
PDLIM5-209ENST00000506632 MROH2BQ7Z745 1585 aa17.38■□□□□ 0.37
PDLIM5-209ENST00000506632 BAZ1BQ9UIG0 1483 aaKnown RBP17.33■□□□□ 0.37
PDLIM5-209ENST00000506632 NESP48681 1621 aa17.17■□□□□ 0.34
PDLIM5-209ENST00000506632 WIZO95785 1651 aa17.16■□□□□ 0.34
PDLIM5-209ENST00000506632 ERCC6Q03468 1493 aa17.14■□□□□ 0.33
PDLIM5-209ENST00000506632 RSF1Q96T23 1441 aaPredicted RBP17.11■□□□□ 0.33
PDLIM5-209ENST00000506632 LAMC3Q9Y6N6 1575 aa17.11■□□□□ 0.33
PDLIM5-209ENST00000506632 CUX2O14529 1486 aa17.09■□□□□ 0.33
PDLIM5-209ENST00000506632 CADPSQ9ULU8 1353 aa17.01■□□□□ 0.31
PDLIM5-209ENST00000506632 TOP2AP11388 1531 aaKnown RBP16.99■□□□□ 0.31
PDLIM5-209ENST00000506632 THOC2Q8NI27 1593 aaKnown RBP16.98■□□□□ 0.31
PDLIM5-209ENST00000506632 PDS5BQ9NTI5 1447 aa16.97■□□□□ 0.31
PDLIM5-209ENST00000506632 KIF21AQ7Z4S6 1674 aa16.96■□□□□ 0.31
PDLIM5-209ENST00000506632 CFTRP13569 1480 aa16.87■□□□□ 0.29
PDLIM5-209ENST00000506632 MRC2Q9UBG0 1479 aa16.83■□□□□ 0.28
PDLIM5-209ENST00000506632 DNAJC5Q9H3Z4 198 aa16.81■□□□□ 0.28
PDLIM5-209ENST00000506632 WDR62O43379 1518 aa16.8■□□□□ 0.28
PDLIM5-209ENST00000506632 FANCD2Q9BXW9 1451 aa16.8■□□□□ 0.28
PDLIM5-209ENST00000506632 CEP164Q9UPV0 1460 aa16.8■□□□□ 0.28
PDLIM5-209ENST00000506632 CCDC88BA6NC98 1476 aa16.78■□□□□ 0.28
PDLIM5-209ENST00000506632 PRDM2Q13029 1718 aa16.71■□□□□ 0.27
PDLIM5-209ENST00000506632 URB2Q14146 1524 aaKnown RBP16.66■□□□□ 0.26
PDLIM5-209ENST00000506632 TOPBP1Q92547 1522 aa16.52■□□□□ 0.24
PDLIM5-209ENST00000506632 ABCC8Q09428 1581 aa16.49■□□□□ 0.23
PDLIM5-209ENST00000506632 DNMBPQ6XZF7 1577 aa16.48■□□□□ 0.23
PDLIM5-209ENST00000506632 IFT140Q96RY7 1462 aa16.46■□□□□ 0.23
PDLIM5-209ENST00000506632 ZNF608Q9ULD9 1512 aaPredicted RBP16.41■□□□□ 0.22
PDLIM5-209ENST00000506632 SUPT5HO00267 1087 aaKnown RBP16.41■□□□□ 0.22
PDLIM5-209ENST00000506632 TARBP1Q13395 1621 aaKnown RBP16.37■□□□□ 0.21
PDLIM5-209ENST00000506632 POLA1P09884 1462 aaPredicted RBP16.36■□□□□ 0.21
PDLIM5-209ENST00000506632 EIF4G3O43432 1585 aaKnown RBP16.34■□□□□ 0.21
PDLIM5-209ENST00000506632 CUX1P39880 1505 aa16.32■□□□□ 0.2
PDLIM5-209ENST00000506632 OSCARQ8IYS5 282 aa16.3■□□□□ 0.2
PDLIM5-209ENST00000506632 FGD5Q6ZNL6 1462 aa16.29■□□□□ 0.2
PDLIM5-209ENST00000506632 RAD54L2Q9Y4B4 1467 aa16.28■□□□□ 0.2
PDLIM5-209ENST00000506632 AQRO60306 1485 aaKnown RBP eCLIP16.27■□□□□ 0.19
PDLIM5-209ENST00000506632 SOGA1O94964 1423 aa16.27■□□□□ 0.19
PDLIM5-209ENST00000506632 WDR97A6NE52 1622 aa16.23■□□□□ 0.19
PDLIM5-209ENST00000506632 TDRD9Q8NDG6 1382 aaKnown RBP16.2■□□□□ 0.18
PDLIM5-209ENST00000506632 CHD1O14646 1710 aa16.16■□□□□ 0.18
PDLIM5-209ENST00000506632 ABCA10Q8WWZ4 1543 aa16.14■□□□□ 0.17
PDLIM5-209ENST00000506632 TOP2BQ02880 1626 aa16.12■□□□□ 0.17
PDLIM5-209ENST00000506632 BIVM-ERCC5R4GMW8 1640 aa16.12■□□□□ 0.17
PDLIM5-209ENST00000506632 GRIN2BQ13224 1484 aa16.12■□□□□ 0.17
PDLIM5-209ENST00000506632 SNAPC4Q5SXM2 1469 aa16.12■□□□□ 0.17
PDLIM5-209ENST00000506632 WRNQ14191 1432 aaPredicted RBP eCLIP16.11■□□□□ 0.17
PDLIM5-209ENST00000506632 MAGI1Q96QZ7 1491 aaPredicted RBP16.1■□□□□ 0.17
PDLIM5-209ENST00000506632 SYNJ1O43426 1573 aa16.1■□□□□ 0.17
PDLIM5-209ENST00000506632 RIMBP3CA6NJZ7 1639 aa16.09■□□□□ 0.17
PDLIM5-209ENST00000506632 RIMBP3BA6NNM3 1639 aa16.09■□□□□ 0.17
PDLIM5-209ENST00000506632 ABCA5Q8WWZ7 1642 aa16.09■□□□□ 0.17
PDLIM5-209ENST00000506632 RIMBP3Q9UFD9 1639 aa16.09■□□□□ 0.17
PDLIM5-209ENST00000506632 GAPVD1Q14C86 1478 aa16.09■□□□□ 0.17
PDLIM5-209ENST00000506632 TRIM41Q8WV44 630 aa16.08■□□□□ 0.16
PDLIM5-209ENST00000506632 ARHGEF11O15085 1522 aa16.08■□□□□ 0.16
PDLIM5-209ENST00000506632 PBRM1Q86U86 1689 aa16.07■□□□□ 0.16
PDLIM5-209ENST00000506632 FBLN2P98095 1184 aa16.05■□□□□ 0.16
PDLIM5-209ENST00000506632 SYNJ2O15056 1496 aa16.04■□□□□ 0.16
PDLIM5-209ENST00000506632 CLASP1Q7Z460 1538 aa16.02■□□□□ 0.15
PDLIM5-209ENST00000506632 CHMP7Q8WUX9 453 aaPredicted RBP16■□□□□ 0.15
PDLIM5-209ENST00000506632 ADAMTS12P58397 1594 aa15.95■□□□□ 0.14
PDLIM5-209ENST00000506632 ARAP1Q96P48 1450 aa15.94■□□□□ 0.14
PDLIM5-209ENST00000506632 ERICH3Q5RHP9 1530 aa15.94■□□□□ 0.14
PDLIM5-209ENST00000506632 GRIN2AQ12879 1464 aa15.91■□□□□ 0.14
PDLIM5-209ENST00000506632 FHAD1B1AJZ9 1412 aa15.9■□□□□ 0.14
PDLIM5-209ENST00000506632 NUP160Q12769 1436 aa15.88■□□□□ 0.13
PDLIM5-209ENST00000506632 CYB5RLQ6IPT4 315 aa15.88■□□□□ 0.13
PDLIM5-209ENST00000506632 CEP170Q5SW79 1584 aa15.86■□□□□ 0.13
PDLIM5-209ENST00000506632 PHF23Q9BUL5 403 aaPredicted RBP15.85■□□□□ 0.13
PDLIM5-209ENST00000506632 SHROOM2Q13796 1616 aa15.79■□□□□ 0.12
PDLIM5-209ENST00000506632 KIF27Q86VH2 1401 aa15.78■□□□□ 0.12
PDLIM5-209ENST00000506632 IGF1RP08069 1367 aa15.77■□□□□ 0.12
PDLIM5-209ENST00000506632 ERCC6L2Q5T890 1561 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms