RNA–Protein interactions for RNA: ENST00000506178.1

SLC1A3-208, Transcript of solute carrier family 1 member 3, humanhuman

TSL 2

Gene SLC1A3, Length 547 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC1A3-208ENST00000506178 NISCHQ9Y2I1 1504 aa25.69■■□□□ 1.7
SLC1A3-208ENST00000506178 ABCC9O60706 1549 aa23.37■■□□□ 1.33
SLC1A3-208ENST00000506178 CCDC180Q9P1Z9 1646 aa23.08■■□□□ 1.29
SLC1A3-208ENST00000506178 AEBP2Q6ZN18 517 aaPredicted RBP22.59■■□□□ 1.21
SLC1A3-208ENST00000506178 DNAJC5BQ9UF47 199 aa22.25■■□□□ 1.15
SLC1A3-208ENST00000506178 RB1CC1Q8TDY2 1594 aa22.08■■□□□ 1.12
SLC1A3-208ENST00000506178 NACADO15069 1562 aa21.89■■□□□ 1.09
SLC1A3-208ENST00000506178 PABPN1Q86U42 306 aaKnown RBP eCLIP21.76■■□□□ 1.07
SLC1A3-208ENST00000506178 DCAF8L2P0C7V8 631 aa21.72■■□□□ 1.07
SLC1A3-208ENST00000506178 UNC13AQ9UPW8 1703 aa21.64■■□□□ 1.06
SLC1A3-208ENST00000506178 BICRAQ9NZM4 1560 aa21.57■■□□□ 1.04
SLC1A3-208ENST00000506178 MYO15BQ96JP2 1530 aa21.54■■□□□ 1.04
SLC1A3-208ENST00000506178 CHIC1Q5VXU3 224 aa21.28■■□□□ 1
SLC1A3-208ENST00000506178 ZCCHC6Q5VYS8 1495 aaKnown RBP21.25■□□□□ 0.99
SLC1A3-208ENST00000506178 DCAF1Q9Y4B6 1507 aa21.19■□□□□ 0.98
SLC1A3-208ENST00000506178 SHROOM4Q9ULL8 1493 aa21.12■□□□□ 0.97
SLC1A3-208ENST00000506178 CC2D2AQ9P2K1 1620 aa21.09■□□□□ 0.97
SLC1A3-208ENST00000506178 SCRIBQ14160 1630 aa21.06■□□□□ 0.96
SLC1A3-208ENST00000506178 CECR2Q9BXF3 1484 aa21.06■□□□□ 0.96
SLC1A3-208ENST00000506178 EIF4G1Q04637 1599 aaKnown RBP20.99■□□□□ 0.95
SLC1A3-208ENST00000506178 DNAJC5Q9H3Z4 198 aa20.5■□□□□ 0.87
SLC1A3-208ENST00000506178 NCAPD3P42695 1498 aa20.27■□□□□ 0.84
SLC1A3-208ENST00000506178 CUX2O14529 1486 aa20.18■□□□□ 0.82
SLC1A3-208ENST00000506178 ATAD2BQ9ULI0 1458 aa20.18■□□□□ 0.82
SLC1A3-208ENST00000506178 ERCC6Q03468 1493 aa20.11■□□□□ 0.81
SLC1A3-208ENST00000506178 SMARCA4P51532 1647 aa20.07■□□□□ 0.8
SLC1A3-208ENST00000506178 NESP48681 1621 aa20.05■□□□□ 0.8
SLC1A3-208ENST00000506178 HMGXB3Q12766 1538 aa20.05■□□□□ 0.8
SLC1A3-208ENST00000506178 SMARCA2P51531 1590 aa20.03■□□□□ 0.8
SLC1A3-208ENST00000506178 BAZ1BQ9UIG0 1483 aaKnown RBP19.92■□□□□ 0.78
SLC1A3-208ENST00000506178 BAZ1AQ9NRL2 1556 aaPredicted RBP19.91■□□□□ 0.78
SLC1A3-208ENST00000506178 PEG3Q9GZU2 1588 aa19.89■□□□□ 0.77
SLC1A3-208ENST00000506178 THOC2Q8NI27 1593 aaKnown RBP19.86■□□□□ 0.77
SLC1A3-208ENST00000506178 MROH2BQ7Z745 1585 aa19.83■□□□□ 0.77
SLC1A3-208ENST00000506178 LAMC3Q9Y6N6 1575 aa19.78■□□□□ 0.76
SLC1A3-208ENST00000506178 KIF21AQ7Z4S6 1674 aa19.72■□□□□ 0.75
SLC1A3-208ENST00000506178 PDS5BQ9NTI5 1447 aa19.67■□□□□ 0.74
SLC1A3-208ENST00000506178 CADPSQ9ULU8 1353 aa19.62■□□□□ 0.73
SLC1A3-208ENST00000506178 WIZO95785 1651 aa19.56■□□□□ 0.72
SLC1A3-208ENST00000506178 MRC2Q9UBG0 1479 aa19.54■□□□□ 0.72
SLC1A3-208ENST00000506178 WDR62O43379 1518 aa19.51■□□□□ 0.71
SLC1A3-208ENST00000506178 TRIM41Q8WV44 630 aa19.45■□□□□ 0.7
SLC1A3-208ENST00000506178 CEP164Q9UPV0 1460 aa19.4■□□□□ 0.7
SLC1A3-208ENST00000506178 FANCD2Q9BXW9 1451 aa19.39■□□□□ 0.69
SLC1A3-208ENST00000506178 CFTRP13569 1480 aa19.36■□□□□ 0.69
SLC1A3-208ENST00000506178 RSF1Q96T23 1441 aaPredicted RBP19.34■□□□□ 0.69
SLC1A3-208ENST00000506178 URB2Q14146 1524 aaKnown RBP19.3■□□□□ 0.68
SLC1A3-208ENST00000506178 TOP2AP11388 1531 aaKnown RBP19.26■□□□□ 0.67
SLC1A3-208ENST00000506178 OSCARQ8IYS5 282 aa19.23■□□□□ 0.67
SLC1A3-208ENST00000506178 ZNF608Q9ULD9 1512 aaPredicted RBP19.1■□□□□ 0.65
SLC1A3-208ENST00000506178 CCDC88BA6NC98 1476 aa19.09■□□□□ 0.65
SLC1A3-208ENST00000506178 SENP3Q9H4L4 574 aaPredicted RBP19.09■□□□□ 0.65
SLC1A3-208ENST00000506178 PRDM2Q13029 1718 aa19.06■□□□□ 0.64
SLC1A3-208ENST00000506178 RIMBP3CA6NJZ7 1639 aa19.03■□□□□ 0.64
SLC1A3-208ENST00000506178 RIMBP3BA6NNM3 1639 aa19.03■□□□□ 0.64
SLC1A3-208ENST00000506178 RIMBP3Q9UFD9 1639 aa19.03■□□□□ 0.64
SLC1A3-208ENST00000506178 IFT140Q96RY7 1462 aa19.03■□□□□ 0.64
SLC1A3-208ENST00000506178 TOPBP1Q92547 1522 aa19.01■□□□□ 0.63
SLC1A3-208ENST00000506178 ARHGEF11O15085 1522 aa18.95■□□□□ 0.62
SLC1A3-208ENST00000506178 EIF4G3O43432 1585 aaKnown RBP18.92■□□□□ 0.62
SLC1A3-208ENST00000506178 PHF23Q9BUL5 403 aaPredicted RBP18.91■□□□□ 0.62
SLC1A3-208ENST00000506178 DNMBPQ6XZF7 1577 aa18.89■□□□□ 0.62
SLC1A3-208ENST00000506178 AQRO60306 1485 aaKnown RBP eCLIP18.89■□□□□ 0.61
SLC1A3-208ENST00000506178 TARBP1Q13395 1621 aaKnown RBP18.88■□□□□ 0.61
SLC1A3-208ENST00000506178 ABCC8Q09428 1581 aa18.87■□□□□ 0.61
SLC1A3-208ENST00000506178 CYB5RLQ6IPT4 315 aa18.82■□□□□ 0.6
SLC1A3-208ENST00000506178 CHD1O14646 1710 aa18.81■□□□□ 0.6
SLC1A3-208ENST00000506178 POLA1P09884 1462 aaPredicted RBP18.81■□□□□ 0.6
SLC1A3-208ENST00000506178 ARAP1Q96P48 1450 aa18.78■□□□□ 0.6
SLC1A3-208ENST00000506178 RAD54L2Q9Y4B4 1467 aa18.77■□□□□ 0.6
SLC1A3-208ENST00000506178 TDRD9Q8NDG6 1382 aaKnown RBP18.73■□□□□ 0.59
SLC1A3-208ENST00000506178 FBLN2P98095 1184 aa18.72■□□□□ 0.59
SLC1A3-208ENST00000506178 SOGA1O94964 1423 aa18.7■□□□□ 0.58
SLC1A3-208ENST00000506178 FGD5Q6ZNL6 1462 aa18.65■□□□□ 0.58
SLC1A3-208ENST00000506178 SNAPC4Q5SXM2 1469 aa18.65■□□□□ 0.58
SLC1A3-208ENST00000506178 CUX1P39880 1505 aa18.64■□□□□ 0.57
SLC1A3-208ENST00000506178 CLASP1Q7Z460 1538 aa18.64■□□□□ 0.57
SLC1A3-208ENST00000506178 TRHP20396 242 aaPredicted RBP18.62■□□□□ 0.57
SLC1A3-208ENST00000506178 WDR97A6NE52 1622 aa18.57■□□□□ 0.56
SLC1A3-208ENST00000506178 MAGI1Q96QZ7 1491 aaPredicted RBP18.56■□□□□ 0.56
SLC1A3-208ENST00000506178 CHMP7Q8WUX9 453 aaPredicted RBP18.55■□□□□ 0.56
SLC1A3-208ENST00000506178 GRIN2BQ13224 1484 aa18.54■□□□□ 0.56
SLC1A3-208ENST00000506178 SYNJ2O15056 1496 aa18.52■□□□□ 0.55
SLC1A3-208ENST00000506178 SYNJ1O43426 1573 aa18.51■□□□□ 0.55
SLC1A3-208ENST00000506178 GAPVD1Q14C86 1478 aa18.46■□□□□ 0.54
SLC1A3-208ENST00000506178 PBRM1Q86U86 1689 aa18.44■□□□□ 0.54
SLC1A3-208ENST00000506178 ABCA10Q8WWZ4 1543 aa18.42■□□□□ 0.54
SLC1A3-208ENST00000506178 ABCA5Q8WWZ7 1642 aa18.41■□□□□ 0.54
SLC1A3-208ENST00000506178 ERCC6L2Q5T890 1561 aa18.38■□□□□ 0.53
SLC1A3-208ENST00000506178 GRIN2AQ12879 1464 aa18.33■□□□□ 0.52
SLC1A3-208ENST00000506178 NUP160Q12769 1436 aa18.3■□□□□ 0.52
SLC1A3-208ENST00000506178 CEP170Q5SW79 1584 aa18.3■□□□□ 0.52
SLC1A3-208ENST00000506178 ADAMTS12P58397 1594 aa18.29■□□□□ 0.52
SLC1A3-208ENST00000506178 WRNQ14191 1432 aaPredicted RBP eCLIP18.27■□□□□ 0.52
SLC1A3-208ENST00000506178 SUPT5HO00267 1087 aaKnown RBP18.26■□□□□ 0.51
SLC1A3-208ENST00000506178 SHROOM2Q13796 1616 aa18.23■□□□□ 0.51
SLC1A3-208ENST00000506178 TOP2BQ02880 1626 aa18.23■□□□□ 0.51
SLC1A3-208ENST00000506178 BIVM-ERCC5R4GMW8 1640 aa18.23■□□□□ 0.51
SLC1A3-208ENST00000506178 FHAD1B1AJZ9 1412 aa18.21■□□□□ 0.51
SLC1A3-208ENST00000506178 ERICH3Q5RHP9 1530 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms