RNA–Protein interactions for RNA: ENST00000503884.5

PROM1-204, Transcript of prominin 1, humanhuman

TSL 3

Gene PROM1, Length 622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-204ENST00000503884 NISCHQ9Y2I1 1504 aa22.85■■□□□ 1.25
PROM1-204ENST00000503884 CCDC180Q9P1Z9 1646 aa20.56■□□□□ 0.88
PROM1-204ENST00000503884 ABCC9O60706 1549 aa20.51■□□□□ 0.87
PROM1-204ENST00000503884 AEBP2Q6ZN18 517 aaPredicted RBP19.96■□□□□ 0.79
PROM1-204ENST00000503884 RB1CC1Q8TDY2 1594 aa19.53■□□□□ 0.72
PROM1-204ENST00000503884 NACADO15069 1562 aa19.41■□□□□ 0.7
PROM1-204ENST00000503884 CHIC1Q5VXU3 224 aa19.32■□□□□ 0.68
PROM1-204ENST00000503884 DNAJC5BQ9UF47 199 aa19.32■□□□□ 0.68
PROM1-204ENST00000503884 MYO15BQ96JP2 1530 aa19.19■□□□□ 0.66
PROM1-204ENST00000503884 UNC13AQ9UPW8 1703 aa19.17■□□□□ 0.66
PROM1-204ENST00000503884 DCAF8L2P0C7V8 631 aa19.13■□□□□ 0.65
PROM1-204ENST00000503884 PABPN1Q86U42 306 aaKnown RBP eCLIP19.05■□□□□ 0.64
PROM1-204ENST00000503884 BICRAQ9NZM4 1560 aa19.02■□□□□ 0.64
PROM1-204ENST00000503884 ZCCHC6Q5VYS8 1495 aaKnown RBP18.94■□□□□ 0.62
PROM1-204ENST00000503884 DCAF1Q9Y4B6 1507 aa18.91■□□□□ 0.62
PROM1-204ENST00000503884 SHROOM4Q9ULL8 1493 aa18.76■□□□□ 0.59
PROM1-204ENST00000503884 SCRIBQ14160 1630 aa18.65■□□□□ 0.58
PROM1-204ENST00000503884 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
PROM1-204ENST00000503884 EIF4G1Q04637 1599 aaKnown RBP18.52■□□□□ 0.56
PROM1-204ENST00000503884 CECR2Q9BXF3 1484 aa18.49■□□□□ 0.55
PROM1-204ENST00000503884 NCAPD3P42695 1498 aa17.93■□□□□ 0.46
PROM1-204ENST00000503884 ATAD2BQ9ULI0 1458 aa17.85■□□□□ 0.45
PROM1-204ENST00000503884 SMARCA4P51532 1647 aa17.83■□□□□ 0.45
PROM1-204ENST00000503884 HMGXB3Q12766 1538 aa17.8■□□□□ 0.44
PROM1-204ENST00000503884 SMARCA2P51531 1590 aa17.79■□□□□ 0.44
PROM1-204ENST00000503884 DNAJC5Q9H3Z4 198 aa17.76■□□□□ 0.43
PROM1-204ENST00000503884 CUX2O14529 1486 aa17.73■□□□□ 0.43
PROM1-204ENST00000503884 BAZ1AQ9NRL2 1556 aaPredicted RBP17.72■□□□□ 0.43
PROM1-204ENST00000503884 PEG3Q9GZU2 1588 aa17.71■□□□□ 0.43
PROM1-204ENST00000503884 ERCC6Q03468 1493 aa17.67■□□□□ 0.42
PROM1-204ENST00000503884 BAZ1BQ9UIG0 1483 aaKnown RBP17.64■□□□□ 0.41
PROM1-204ENST00000503884 NESP48681 1621 aa17.62■□□□□ 0.41
PROM1-204ENST00000503884 MROH2BQ7Z745 1585 aa17.59■□□□□ 0.41
PROM1-204ENST00000503884 LAMC3Q9Y6N6 1575 aa17.53■□□□□ 0.4
PROM1-204ENST00000503884 THOC2Q8NI27 1593 aaKnown RBP17.51■□□□□ 0.39
PROM1-204ENST00000503884 KIF21AQ7Z4S6 1674 aa17.43■□□□□ 0.38
PROM1-204ENST00000503884 WIZO95785 1651 aa17.38■□□□□ 0.37
PROM1-204ENST00000503884 PDS5BQ9NTI5 1447 aa17.38■□□□□ 0.37
PROM1-204ENST00000503884 CADPSQ9ULU8 1353 aa17.35■□□□□ 0.37
PROM1-204ENST00000503884 MRC2Q9UBG0 1479 aa17.24■□□□□ 0.35
PROM1-204ENST00000503884 WDR62O43379 1518 aa17.24■□□□□ 0.35
PROM1-204ENST00000503884 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.34
PROM1-204ENST00000503884 CFTRP13569 1480 aa17.17■□□□□ 0.34
PROM1-204ENST00000503884 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
PROM1-204ENST00000503884 CEP164Q9UPV0 1460 aa17.15■□□□□ 0.34
PROM1-204ENST00000503884 FANCD2Q9BXW9 1451 aa17.14■□□□□ 0.33
PROM1-204ENST00000503884 PRDM2Q13029 1718 aa17.04■□□□□ 0.32
PROM1-204ENST00000503884 URB2Q14146 1524 aaKnown RBP17.03■□□□□ 0.32
PROM1-204ENST00000503884 PHF23Q9BUL5 403 aaPredicted RBP17■□□□□ 0.31
PROM1-204ENST00000503884 CCDC88BA6NC98 1476 aa16.96■□□□□ 0.31
PROM1-204ENST00000503884 SENP3Q9H4L4 574 aaPredicted RBP16.9■□□□□ 0.3
PROM1-204ENST00000503884 OSCARQ8IYS5 282 aa16.85■□□□□ 0.29
PROM1-204ENST00000503884 TRIM41Q8WV44 630 aa16.85■□□□□ 0.29
PROM1-204ENST00000503884 TOPBP1Q92547 1522 aa16.83■□□□□ 0.28
PROM1-204ENST00000503884 IFT140Q96RY7 1462 aa16.83■□□□□ 0.28
PROM1-204ENST00000503884 ZNF608Q9ULD9 1512 aaPredicted RBP16.81■□□□□ 0.28
PROM1-204ENST00000503884 ABCC8Q09428 1581 aa16.79■□□□□ 0.28
PROM1-204ENST00000503884 DNMBPQ6XZF7 1577 aa16.77■□□□□ 0.28
PROM1-204ENST00000503884 EIF4G3O43432 1585 aaKnown RBP16.73■□□□□ 0.27
PROM1-204ENST00000503884 TARBP1Q13395 1621 aaKnown RBP16.72■□□□□ 0.27
PROM1-204ENST00000503884 RIMBP3CA6NJZ7 1639 aa16.7■□□□□ 0.26
PROM1-204ENST00000503884 RIMBP3BA6NNM3 1639 aa16.7■□□□□ 0.26
PROM1-204ENST00000503884 RIMBP3Q9UFD9 1639 aa16.7■□□□□ 0.26
PROM1-204ENST00000503884 POLA1P09884 1462 aaPredicted RBP16.66■□□□□ 0.26
PROM1-204ENST00000503884 AQRO60306 1485 aaKnown RBP eCLIP16.64■□□□□ 0.25
PROM1-204ENST00000503884 ARHGEF11O15085 1522 aa16.63■□□□□ 0.25
PROM1-204ENST00000503884 CHD1O14646 1710 aa16.62■□□□□ 0.25
PROM1-204ENST00000503884 RAD54L2Q9Y4B4 1467 aa16.58■□□□□ 0.24
PROM1-204ENST00000503884 WDR97A6NE52 1622 aa16.55■□□□□ 0.24
PROM1-204ENST00000503884 SOGA1O94964 1423 aa16.54■□□□□ 0.24
PROM1-204ENST00000503884 FGD5Q6ZNL6 1462 aa16.54■□□□□ 0.24
PROM1-204ENST00000503884 CUX1P39880 1505 aa16.53■□□□□ 0.24
PROM1-204ENST00000503884 TDRD9Q8NDG6 1382 aaKnown RBP16.51■□□□□ 0.23
PROM1-204ENST00000503884 ARAP1Q96P48 1450 aa16.48■□□□□ 0.23
PROM1-204ENST00000503884 SNAPC4Q5SXM2 1469 aa16.47■□□□□ 0.23
PROM1-204ENST00000503884 CLASP1Q7Z460 1538 aa16.45■□□□□ 0.22
PROM1-204ENST00000503884 MAGI1Q96QZ7 1491 aaPredicted RBP16.44■□□□□ 0.22
PROM1-204ENST00000503884 FBLN2P98095 1184 aa16.44■□□□□ 0.22
PROM1-204ENST00000503884 CYB5RLQ6IPT4 315 aa16.44■□□□□ 0.22
PROM1-204ENST00000503884 GRIN2BQ13224 1484 aa16.42■□□□□ 0.22
PROM1-204ENST00000503884 PBRM1Q86U86 1689 aa16.39■□□□□ 0.21
PROM1-204ENST00000503884 SYNJ1O43426 1573 aa16.38■□□□□ 0.21
PROM1-204ENST00000503884 SYNJ2O15056 1496 aa16.38■□□□□ 0.21
PROM1-204ENST00000503884 ABCA10Q8WWZ4 1543 aa16.37■□□□□ 0.21
PROM1-204ENST00000503884 ABCA5Q8WWZ7 1642 aa16.37■□□□□ 0.21
PROM1-204ENST00000503884 CHMP7Q8WUX9 453 aaPredicted RBP16.35■□□□□ 0.21
PROM1-204ENST00000503884 GAPVD1Q14C86 1478 aa16.35■□□□□ 0.21
PROM1-204ENST00000503884 SUPT5HO00267 1087 aaKnown RBP16.29■□□□□ 0.2
PROM1-204ENST00000503884 BIVM-ERCC5R4GMW8 1640 aa16.29■□□□□ 0.2
PROM1-204ENST00000503884 TOP2BQ02880 1626 aa16.27■□□□□ 0.19
PROM1-204ENST00000503884 WRNQ14191 1432 aaPredicted RBP eCLIP16.24■□□□□ 0.19
PROM1-204ENST00000503884 GRIN2AQ12879 1464 aa16.22■□□□□ 0.19
PROM1-204ENST00000503884 ADAMTS12P58397 1594 aa16.22■□□□□ 0.19
PROM1-204ENST00000503884 TRHP20396 242 aaPredicted RBP16.22■□□□□ 0.19
PROM1-204ENST00000503884 NUP160Q12769 1436 aa16.19■□□□□ 0.18
PROM1-204ENST00000503884 CEP170Q5SW79 1584 aa16.18■□□□□ 0.18
PROM1-204ENST00000503884 ERCC6L2Q5T890 1561 aa16.17■□□□□ 0.18
PROM1-204ENST00000503884 ERICH3Q5RHP9 1530 aa16.16■□□□□ 0.18
PROM1-204ENST00000503884 SHROOM2Q13796 1616 aa16.16■□□□□ 0.18
PROM1-204ENST00000503884 FHAD1B1AJZ9 1412 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms