RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 NISCHQ9Y2I1 1504 aa26.27■■□□□ 1.8
NELFE-213ENST00000494956 CCDC180Q9P1Z9 1646 aa23.43■■□□□ 1.34
NELFE-213ENST00000494956 ABCC9O60706 1549 aa23.28■■□□□ 1.32
NELFE-213ENST00000494956 RB1CC1Q8TDY2 1594 aa22.18■■□□□ 1.14
NELFE-213ENST00000494956 DCAF8L2P0C7V8 631 aa22.15■■□□□ 1.14
NELFE-213ENST00000494956 NACADO15069 1562 aa22.07■■□□□ 1.12
NELFE-213ENST00000494956 ZCCHC6Q5VYS8 1495 aaKnown RBP21.83■■□□□ 1.08
NELFE-213ENST00000494956 UNC13AQ9UPW8 1703 aa21.8■■□□□ 1.08
NELFE-213ENST00000494956 MYO15BQ96JP2 1530 aa21.8■■□□□ 1.08
NELFE-213ENST00000494956 PABPN1Q86U42 306 aaKnown RBP eCLIP21.74■■□□□ 1.07
NELFE-213ENST00000494956 DNAJC5BQ9UF47 199 aa21.65■■□□□ 1.06
NELFE-213ENST00000494956 DCAF1Q9Y4B6 1507 aa21.64■■□□□ 1.05
NELFE-213ENST00000494956 BICRAQ9NZM4 1560 aa21.6■■□□□ 1.05
NELFE-213ENST00000494956 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
NELFE-213ENST00000494956 SHROOM4Q9ULL8 1493 aa21.16■□□□□ 0.98
NELFE-213ENST00000494956 AEBP2Q6ZN18 517 aaPredicted RBP21.05■□□□□ 0.96
NELFE-213ENST00000494956 CC2D2AQ9P2K1 1620 aa21.03■□□□□ 0.96
NELFE-213ENST00000494956 EIF4G1Q04637 1599 aaKnown RBP21.02■□□□□ 0.95
NELFE-213ENST00000494956 CHIC1Q5VXU3 224 aa20.95■□□□□ 0.94
NELFE-213ENST00000494956 CECR2Q9BXF3 1484 aa20.89■□□□□ 0.94
NELFE-213ENST00000494956 SMARCA4P51532 1647 aa20.46■□□□□ 0.87
NELFE-213ENST00000494956 ATAD2BQ9ULI0 1458 aa20.4■□□□□ 0.86
NELFE-213ENST00000494956 NCAPD3P42695 1498 aa20.37■□□□□ 0.85
NELFE-213ENST00000494956 BAZ1AQ9NRL2 1556 aaPredicted RBP20.34■□□□□ 0.85
NELFE-213ENST00000494956 SMARCA2P51531 1590 aa20.31■□□□□ 0.84
NELFE-213ENST00000494956 MROH2BQ7Z745 1585 aa20.3■□□□□ 0.84
NELFE-213ENST00000494956 HMGXB3Q12766 1538 aa20.26■□□□□ 0.83
NELFE-213ENST00000494956 BAZ1BQ9UIG0 1483 aaKnown RBP20.21■□□□□ 0.83
NELFE-213ENST00000494956 PEG3Q9GZU2 1588 aa20.2■□□□□ 0.82
NELFE-213ENST00000494956 WIZO95785 1651 aa20.1■□□□□ 0.81
NELFE-213ENST00000494956 NESP48681 1621 aa20.1■□□□□ 0.81
NELFE-213ENST00000494956 ERCC6Q03468 1493 aa20.03■□□□□ 0.8
NELFE-213ENST00000494956 RSF1Q96T23 1441 aaPredicted RBP19.94■□□□□ 0.78
NELFE-213ENST00000494956 LAMC3Q9Y6N6 1575 aa19.88■□□□□ 0.77
NELFE-213ENST00000494956 CUX2O14529 1486 aa19.85■□□□□ 0.77
NELFE-213ENST00000494956 KIF21AQ7Z4S6 1674 aa19.84■□□□□ 0.77
NELFE-213ENST00000494956 THOC2Q8NI27 1593 aaKnown RBP19.79■□□□□ 0.76
NELFE-213ENST00000494956 CADPSQ9ULU8 1353 aa19.79■□□□□ 0.76
NELFE-213ENST00000494956 TOP2AP11388 1531 aaKnown RBP19.78■□□□□ 0.76
NELFE-213ENST00000494956 PDS5BQ9NTI5 1447 aa19.74■□□□□ 0.75
NELFE-213ENST00000494956 CFTRP13569 1480 aa19.62■□□□□ 0.73
NELFE-213ENST00000494956 MRC2Q9UBG0 1479 aa19.6■□□□□ 0.73
NELFE-213ENST00000494956 CCDC88BA6NC98 1476 aa19.59■□□□□ 0.73
NELFE-213ENST00000494956 FANCD2Q9BXW9 1451 aa19.59■□□□□ 0.73
NELFE-213ENST00000494956 DNAJC5Q9H3Z4 198 aa19.58■□□□□ 0.72
NELFE-213ENST00000494956 CEP164Q9UPV0 1460 aa19.57■□□□□ 0.72
NELFE-213ENST00000494956 WDR62O43379 1518 aa19.55■□□□□ 0.72
NELFE-213ENST00000494956 PRDM2Q13029 1718 aa19.48■□□□□ 0.71
NELFE-213ENST00000494956 URB2Q14146 1524 aaKnown RBP19.45■□□□□ 0.7
NELFE-213ENST00000494956 SUPT5HO00267 1087 aaKnown RBP19.32■□□□□ 0.68
NELFE-213ENST00000494956 TOPBP1Q92547 1522 aa19.26■□□□□ 0.67
NELFE-213ENST00000494956 DNMBPQ6XZF7 1577 aa19.19■□□□□ 0.66
NELFE-213ENST00000494956 ZNF608Q9ULD9 1512 aaPredicted RBP19.19■□□□□ 0.66
NELFE-213ENST00000494956 IFT140Q96RY7 1462 aa19.16■□□□□ 0.66
NELFE-213ENST00000494956 ABCC8Q09428 1581 aa19.13■□□□□ 0.65
NELFE-213ENST00000494956 TARBP1Q13395 1621 aaKnown RBP19.08■□□□□ 0.65
NELFE-213ENST00000494956 POLA1P09884 1462 aaPredicted RBP19.08■□□□□ 0.64
NELFE-213ENST00000494956 EIF4G3O43432 1585 aaKnown RBP19.06■□□□□ 0.64
NELFE-213ENST00000494956 RAD54L2Q9Y4B4 1467 aa19.06■□□□□ 0.64
NELFE-213ENST00000494956 CUX1P39880 1505 aa19.05■□□□□ 0.64
NELFE-213ENST00000494956 AQRO60306 1485 aaKnown RBP eCLIP19.03■□□□□ 0.648e-7■■■□□ 14.6
NELFE-213ENST00000494956 OSCARQ8IYS5 282 aa19.01■□□□□ 0.63
NELFE-213ENST00000494956 FGD5Q6ZNL6 1462 aa19.01■□□□□ 0.63
NELFE-213ENST00000494956 SOGA1O94964 1423 aa18.99■□□□□ 0.63
NELFE-213ENST00000494956 TDRD9Q8NDG6 1382 aaKnown RBP18.95■□□□□ 0.62
NELFE-213ENST00000494956 CHD1O14646 1710 aa18.92■□□□□ 0.62
NELFE-213ENST00000494956 TRIM41Q8WV44 630 aa18.91■□□□□ 0.62
NELFE-213ENST00000494956 WDR97A6NE52 1622 aa18.88■□□□□ 0.61
NELFE-213ENST00000494956 FBLN2P98095 1184 aa18.86■□□□□ 0.61
NELFE-213ENST00000494956 SNAPC4Q5SXM2 1469 aa18.84■□□□□ 0.61
NELFE-213ENST00000494956 SYNJ1O43426 1573 aa18.82■□□□□ 0.6
NELFE-213ENST00000494956 RIMBP3CA6NJZ7 1639 aa18.81■□□□□ 0.6
NELFE-213ENST00000494956 RIMBP3BA6NNM3 1639 aa18.81■□□□□ 0.6
NELFE-213ENST00000494956 RIMBP3Q9UFD9 1639 aa18.81■□□□□ 0.6
NELFE-213ENST00000494956 BIVM-ERCC5R4GMW8 1640 aa18.79■□□□□ 0.6
NELFE-213ENST00000494956 WRNQ14191 1432 aaPredicted RBP eCLIP18.79■□□□□ 0.6
NELFE-213ENST00000494956 PBRM1Q86U86 1689 aa18.79■□□□□ 0.6
NELFE-213ENST00000494956 TOP2BQ02880 1626 aa18.78■□□□□ 0.6
NELFE-213ENST00000494956 ABCA10Q8WWZ4 1543 aa18.77■□□□□ 0.6
NELFE-213ENST00000494956 GRIN2BQ13224 1484 aa18.77■□□□□ 0.59
NELFE-213ENST00000494956 GAPVD1Q14C86 1478 aa18.76■□□□□ 0.59
NELFE-213ENST00000494956 ABCA5Q8WWZ7 1642 aa18.75■□□□□ 0.59
NELFE-213ENST00000494956 ARHGEF11O15085 1522 aa18.74■□□□□ 0.59
NELFE-213ENST00000494956 MAGI1Q96QZ7 1491 aaPredicted RBP18.72■□□□□ 0.59
NELFE-213ENST00000494956 CHMP7Q8WUX9 453 aaPredicted RBP18.71■□□□□ 0.59
NELFE-213ENST00000494956 SYNJ2O15056 1496 aa18.67■□□□□ 0.58
NELFE-213ENST00000494956 CLASP1Q7Z460 1538 aa18.64■□□□□ 0.58
NELFE-213ENST00000494956 CYB5RLQ6IPT4 315 aa18.61■□□□□ 0.57
NELFE-213ENST00000494956 ARAP1Q96P48 1450 aa18.59■□□□□ 0.57
NELFE-213ENST00000494956 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
NELFE-213ENST00000494956 GRIN2AQ12879 1464 aa18.55■□□□□ 0.56
NELFE-213ENST00000494956 ERICH3Q5RHP9 1530 aa18.52■□□□□ 0.56
NELFE-213ENST00000494956 CEP170Q5SW79 1584 aa18.51■□□□□ 0.55
NELFE-213ENST00000494956 FHAD1B1AJZ9 1412 aa18.5■□□□□ 0.55
NELFE-213ENST00000494956 ERCC6L2Q5T890 1561 aa18.47■□□□□ 0.55
NELFE-213ENST00000494956 NUP160Q12769 1436 aa18.46■□□□□ 0.55
NELFE-213ENST00000494956 KIF27Q86VH2 1401 aa18.39■□□□□ 0.53
NELFE-213ENST00000494956 PHF23Q9BUL5 403 aaPredicted RBP18.38■□□□□ 0.53
NELFE-213ENST00000494956 IGF1RP08069 1367 aa18.38■□□□□ 0.53
NELFE-213ENST00000494956 SHROOM2Q13796 1616 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms